AMCG00016552


Basic Information

Item Value
gene id AMCG00016552
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 24875864 ~ 24878227 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016552
ATGGAGACAAGCaggagcagcagagagagagagagagagagagagagagcaagggagagagagtgctCCAGTGGGGAGTGCAGAAaggggagagcagcagcagcagcagcaaacacAGCAGACATGGACCTGCATTGTGAGTGCAGCGAGCCGCCGCCGGCCGAGCAGCCGCCAGGGAGGATCAACAGGGCTGCCTTCAAGCTGTTCGGCAAGAGGCGGTCGGGCAGTGCGGTGCCCAGCATCTTCGGAGTGAAGAACAAAGGGGAGGGCAAAAGCTCGGGGAAGACGGGACTCGTTAGGAGCAAGACTCATGACGGATTAGCCGAGACGGTGGTGGAGGGCGTCAGGAAGGAGGAATCCTCCAGCAGCGACCAGCTGAGCTGCACGGTCCCAGTCAGGAGCGAGCCAGGCCCCGGTGTGGCAGCAGGCAGCTCAGTCACCAAGTCCCTGAGCTTCTTCTCCCTGTTGAAGAAGAACGGGCGATCGGAGGGCAGCGCTGAGCACAGGACTGGCAGTAAACAAAGGAAGGGGCTGAAGGGGCTGTTCAGCAGCATGCGCTGGCACAGGAGAGACAAGAGCGGCAGGGAGGACAGAGAGGAAGCggtgctggaggctcagccCCCCGCTCCTCCAGCCCCCCAGCGGCCCGACGCCACTGAGCCACAGACACAGGTGCTGCCCATTGCGGCCTGCAACAAGCCCCAGCCCCCGGCCCTGGCCCCGGAGGCTGTACAGGATGCCCCTGCAGAGACGTCCCCACAGGAGACAGCTGGGCAGCCAGCGGTGGCTAGGGAGGGTGGCAGGCCGCTAACTGCGATACAGAACGGGGAGAGCTCACCCAGGCAACCCGAGTCCCGGCCAGGCCCCAGCCCACAGCTGGAGCAGGGGTTTTCCACAGCGGGCGCCCCAGCCCCGTCCCGGGAGGAGGCAGCCACAGGGCAACTGAGACCTGTGACCCCGCTGCTGCAGCACAAATGCAAGCACAGCCGCCCCGAGGCTGCCCCCTTCTCCACAGCCCCCAGCATGACCGTCACCCCCCCACCTGAGGCCTCAGCTGCCGACCCCCCATCCGAACCCTCCATGGACCGCATTTGCTCCCTGTTTGCCGATGTCACCTCACTCAAGAGCTTTGACTCGCTAACAGGCTGTGGGGACATCATCGCCGACCCCGAGGAGGAGGCCGGTAGCGCGGGCAGCAGTGGCACTGGCAGCAGTGGGGGGGgggCAGCAGTGACGGCAGTGACAGCAGTGACAGGGGCAGGGGCAGTacggggaggaggaggtggggggttgATATTGGAGAAGGCCCTCCCTGCCCCTGTGAGAGCCAGGCTGGCCCCCAGGAAGGCCCAGGGTGGGGGTGTGGTGGCGTACCAAGGTGGGGGGGAGGAGATGGCCAGCCCTGATGAGGTGGATGAGGCTGACCTGCAGGGGTTCTGGGAGATGCTGCCGCAGACGGAGACAGAGGGGCCGCCCCACCAGCAGCCCAGGAAGGAGGCCCCTGCAACCCTTCAGCAGCCCAGGGCGGAGGCCCCTACAACCCGCCAGCAGCCCAGGGTCGAGGTCCCCGCAATCCCCCAGCCCCCCAAGCCCTCATACTCTCCTCCCCAAGCCTCCcagcccccccagccccaccaCAGAGCTCGAATGGAGAGGTGTGGCGCCCCTGCGGTCAAGGCACTGGGACTCAGCAAGATCCCAGTGAGTGGAGGCAGCAGCAGAGCTGGCAAGAGCCACAAGGAGCCTGAGGAGAGCCGCGACAAGGAGGCACAGGACGGCGTGCCCAACAGTGACGAGGGCTACTGGGACTCCACCACGCCCGGGCCCGAGGAGGAGAGCAGCAGGGGCAGCTTCCTGGCCAAGGAGTCCCTGCCGCGGGACAGCTGCAGCGGTGATGCGCTGTATGACCTCTACGTGGACCCGGACGAGAGCCTGGCAGGGAGGGGGTCGGACGAGGACATGTCGTCGCTGTCTGCCTGCGAGCCCAAGCTGACGCCACCCCTACAGGCCACTTTCCGCTCCCTCAAGGGCAGTGCCAGTCTGCCCCGTGACTCCAAAATCCCCGTGAGCGTCAAGCAGGTGCCCTCGCACTCGGCCAGCCACGGAGCACTAGTCCCCTGCCACGCCCCCGCCGGGCACACCCCCCCCGCCAAGGCCGAGCTGCCGCGCACCAAGATCCCCGTGCCCCGAGCGCTTGGCAAACGGACTGGCAACAAGACTGTGGGCGGGAAACTCTCCCACCACGAGCACATCCGGAAATAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016552 True 2262 mRNA 0.66 2 24875864 24878227

Neighbor

gene id symbol gene type direction distance location
AMCG00016551 NA coding downstream 65952 24802736 ~ 24809912 (-)
AMCG00016550 NA coding downstream 75670 24790148 ~ 24800194 (-)
AMCG00016545 NA coding downstream 89454 24762569 ~ 24786410 (-)
AMCG00016546 LOC108276628,LOC107663623 coding downstream 136742 24721189 ~ 24739122 (-)
AMCG00016539 NA coding downstream 325739 24548377 ~ 24550125 (-)
AMCG00016555 mtmr6,LOC104951663 coding upstream 5676 24883903 ~ 24894419 (-)
AMCG00016556 NA coding upstream 52590 24930817 ~ 24953633 (-)
AMCG00016564 LOC107584968 coding upstream 94820 24973047 ~ 25001455 (-)
AMCG00016565 NA coding upstream 178333 25056560 ~ 25057570 (-)
AMCG00016563 usp12,usp12a,LOC107705210,LOC107591222,LOC107584971 coding upstream 194943 25073170 ~ 25080493 (-)
G14245 NA non-coding downstream 95598 24716726 ~ 24780266 (-)
G14222 NA non-coding downstream 191329 24683065 ~ 24684535 (-)
G14218 NA non-coding downstream 257519 24615787 ~ 24618345 (-)
G14214 NA non-coding downstream 269543 24606108 ~ 24606321 (-)
G14213 NA non-coding downstream 273857 24601698 ~ 24602007 (-)
G14311 NA non-coding upstream 26894 24905121 ~ 24906546 (-)
G14400 NA non-coding upstream 243863 25122090 ~ 25122375 (-)
G14472 NA non-coding upstream 526668 25404895 ~ 25405101 (-)
G14487 rpl19,LOC101068736,LOC103368168 non-coding upstream 638762 25516989 ~ 25520096 (-)
G14496 NA non-coding upstream 664819 25543046 ~ 25545725 (-)
AMCG00016538 smpx,LOC107721880,LOC107590224,LOC107663668,LOC107705278 other downstream 308908 24553692 ~ 24566956 (-)
AMCG00016531 NA other downstream 552406 24309256 ~ 24323458 (-)
AMCG00016505 NA other downstream 990606 23864581 ~ 23885258 (-)
AMCG00016504 NA other downstream 1013125 23841062 ~ 23862739 (-)
G13969 NA other downstream 1175609 23699149 ~ 23700255 (-)
G14305 NA other upstream 2921 24881148 ~ 24882098 (-)
AMCG00016562 rnf6 other upstream 129747 25007974 ~ 25015343 (-)
G14392 NA other upstream 202341 25080568 ~ 25083699 (-)
AMCG00016579 NA other upstream 386545 25264772 ~ 25277478 (-)
AMCG00016591 NA other upstream 535089 25413316 ~ 25420371 (-)

Expression


Co-expression Network