AMCG00016557


Basic Information

Item Value
gene id AMCG00016557
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25034938 ~ 25049552 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016557
CCCGGCACCGGCCACCGCACCGTCCGCCCCGAGCTGCCACTCAACCCACAGCCCCCGCCCACCGCGGCTCTCCACTGGACGCCCGGACCACCACGGCGCCTGAAATCCCCTCTCCTCCGTCTTGATTGGCCCAGAGCGGTGCCCGTCAGCCAGCACCTCCCGCCCCGGTGGCGGATTGAGTGGCGTGCGGTCCGGCTGCGCTGGACAGTGAATGGTGGACGGAGACCGAGCCCCGCAGCCCATCGCTCCCCGACGGCGGACTCTTCCGAGtgtgaTGGTGTGAGCCCCGTCCCTGTTAACATGCCGCTGGTGAAGAGGAACATTGAGCCGCGCCCGCTGTGCCGGGGGACGCTGCCCGAGGGCATCAGCAGCGAGTTGGAGTGCGTCACCAATAACACCCTCTCCTCCATCATCCGCCAGCTCAGCAGCCTCAGTAAGCATGCAGAGGACATTTTTGGGGAGCTGTTCAATGAGGCCAACCACTTCTACCTGCGCGCCAACTCCCTGCAGGACCGCATTGACCGACTGGCTGTGAAGGTCACGCAGCTGGACTCCACAGTGGAGGAGGTGTCCCTGCAGGACATCAACATGAGGAAGGCCTTCAAGAGCTCTACGGTGCAGGACCAGCAGGTGGTGTCCAAGAACAGCATCCCCAACCCCGTGGTGGAGATGTACAGTCAGAGCGACAAGCCACCCCCCCTCAGCATACTCAGCCCTTACAGAGATGACAAGAAGGACGGGCTGAAGTTCTACACCGACCCCTCCTACTTCTTCGACCTGTGGAAAGAGAAGATGCTGCAGGACACGGAGGACAAGAGGAAAGAGAAGAGGAGGCAGAAGAACGCCGGCCACGGGGCCTCGTCCGAGGGCTCGCTCTCCCCGGACAGCAGGTCCCACGGCTCGGACCTGACGGAGTACTCGTACCCGGCCACACCCAACCACTCAGCCCTgcaccaccaccagcaccaccacGGCCTCGCCCACACGCTCCCGCCCACCCTGCCGCACCACTACCTCGCCGCCGAAGCCCAGTCTCACCTGCTGGGCACGGCGTCGGGGCTGGAGCACGACTACCGCACCCTGGGGCACAGGCAGGGCACGCTGAGCCGGCCACAGCAGCCTCCgccgcccccgccccccacaGACACTGCCCTCACCCACAACGGAGGCCTGCCGCCACCCCCTGTGGAGTACAGcATGTCCACCGCTCACATGATGGAGTACTACGGCTCCGGGGGgccgcccccccctcccccggctCCACTCATCCCCTCGGCCCAGACTGCCTTCGCCACTCCCCTGGGGGGCCCCATCCCACCCACACCCCATGGAGGGCCAATGGCTGGGGTTGCCGGATACGCTCCTCCCCTTCAGCAGTCATCTGGAGCCTTGGTGGCTCCTCCTCCGCCTGGCCCACCACCTCCGCCTCCTCCCAGCTTCGCCCACTCCCCCAAACACGGCACGCTGCCCTCCGCCACCCCCGAGGGCAAGAGGCACGAGGGCACCCAGCCTGTCAACGATGCTCGCAGCGACCTGCTGGCAGCCATTCGCATGGGTATCCAGCTGAAGAAGGtgcaggagcagcaggagcagcaggcgAAGCGCGAGCCTGTGGGCAACGATGTGGCCACCATCCTGTCCCGCCGCATCGCTGTGGAGTACAGCGACTCCGACGACTCCGAGCTGGAGGACAACGAGTGGTCCGACTGACCCGGGGCGGCTGACCATCCCACGCTGACCCACGCTGACCGGACAACGGAGACACACTGGCTGACATCCACTTTAACTAGAGCCACCCCAACAGACTGACTGGAGCCAAGACTGGTTGACTAAAAGcccaactgactgactgactgactgactgatagcCCCCaacctgacacactgaccgGCCGATTGACTGACTTGCATCCCCACATACTGACCAACTGACCAACCAACGGACCCTCACTTGGATGTGTGAGGGTTGGGGGTCGGACTGTGGTCGGGGGGGATACTGCTGTACATACCCCTGTCACATACACCCCCCTACACAGGAGAGCACTCACCGATCTGAATACTCATCATTCataaagtgtgtatatatattttagtatgcTGTGCATCACATAACAATCGTTATCAAAGATACTTACTGGAGTTGCCTGGCTCCGCTGTTCCTGCTCGACGCCGTGCCAAGGGACTCCTGCGTCGTCGAGAGCTGGTGTCGGCACCGACCGAGAGCAGAGACCCAAACCAACTGAAAGCAATAAGAAGGCTGTGCGTCTGGGTGGCAGGGATATTCacaccctgccccccccaccattAACTCTGTGCAACCGAAGCAAAAGGAGATGACTAATGATgatattaattttttaatatgtcCCTTTTTTAAAAGGCACTATAGGTTTACTATTTgttccttattatttttttaattagactcTAGAATAGAGAGAATTTATAGGCATGAGCCTGACTCTAAGAACATTAGAGAGGCAATAGTCTTTCCACATCCCAGAAGCCAAGAGGTGCTACTCTACCACTCAGGCTCCCTgtgtcaaatctaagcagattgtcaATTCAATTAAGATTCAATGAAGTAAtggagagctcagttggaacaaaaaccagcagggtagggtcCTCGAAACGTCTAGTGCTTGACTTGACTAGTCCACACTCTAGAGGTGGGATGTTGAAAGCTGCGCCACGGGTTTGAGTCACTGTGAATGATGGACAGTACACACTGGATGTGACGGAGTACACTGTGGTCCCTTGCCTTCCATATGAATTAGTTGCCGTTGACTTGTGTAATGGCAGCACCCCCTGCACTGGGTCCTGTAGTGGGAGCACAGAAGACGTGGCGACAGAAAGCAAACTGCAGACCATTTCAGAATCCGCAGTGTGGAGGCTTGGATTTCCCTTCCCTTTGCTGGTGAAATGCACCACAGATCTTCGCTGGCTCCCAGACTGACCGAGTCACACTGCCACACTGTGAAACAactgttgtcttgtttttcttctgtaaccagtaacttaaaaaaaaacaaaaaacttttgaTCTGAtctctgaaaatgttaaattaaaataaaaacacaaaaccccaGTCCAGCGCTCATGACCCATAGCTGTTGAAACTGTATTCTCTTTTACGCTTTTATAGACTGACATTAAATGaggttttacatttctttcGCCTTCCTTGgcaattatttgatttgattggattttattttttctttctctgagaCGGTATGTATAGctgaatatattaaatgagtTGAAGGGAGGGGCCACCCACCTGTTCTTATTGAGAATGTGAGCGCGGCCATCCTAGGGGACCAACCTGGGGCCACTGAGGACTCAACGTTCCTCTGCAGGATAGCGGGGGACTGGGCAGCTTCTTTTTTGTTCTCCTCCTTGcttaaaagcatatttttggGTGGGCTGCATCATTAGTGCACTGCTTATGCACTGCTTCTCCACTGCAGAGGAGAGAGGCTTTAGTGCCAGTTGTTTGGGTCCAGTGTTGGCCCCCTGAGTGCAATACTGACCTGGGGGGCAGAGGTGTGTTTCCTGCCCGTCCCCTGTGCCTGTGAGCAGGCGGCCATGTCTGTGAGCTCCAGTCTGCAGTGCTCCTGCTCTGGCTCCGAGTCTGTACAGCAGCTAACCAGAATAAACCCCAGTTTAACCCCC

Function

GO: NA

KEGG:

id description
K06083 WASF3; WAS protein family, member 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016557 True 3682 mRNA 0.57 9 25034938 25049552

Neighbor

gene id symbol gene type direction distance location
AMCG00016559 cdk8 coding upstream 3885 25020845 ~ 25031053 (+)
AMCG00016561 NA coding upstream 14717 25016040 ~ 25020221 (+)
AMCG00016553 NA coding upstream 114902 24912011 ~ 24920036 (+)
AMCG00016554 nup58 coding upstream 124924 24895102 ~ 24910014 (+)
AMCG00016549 NA coding upstream 168514 24825609 ~ 24866424 (+)
AMCG00016560 NA coding downstream 38059 25087611 ~ 25088937 (+)
AMCG00016568 NA coding downstream 54135 25103687 ~ 25106170 (+)
AMCG00016567 gsx1,LOC106603173,LOC106563638,LOC107560336,LOC107719766 coding downstream 132679 25182231 ~ 25183232 (+)
AMCG00016576 NA coding downstream 150590 25200142 ~ 25200540 (+)
AMCG00016571 pan3 coding downstream 192462 25242014 ~ 25262456 (+)
G14177 NA non-coding upstream 615331 24419358 ~ 24419607 (+)
G14127 eif1ax,EIF1AX,eif1axb,LOC105905255,LOC106563585,LOC106590461,LOC108411992 non-coding upstream 659111 24370326 ~ 24375827 (+)
G14136 NA non-coding upstream 696090 24336970 ~ 24338848 (+)
G14132 NA non-coding upstream 713619 24317800 ~ 24321319 (+)
G13979 lipt2 non-coding upstream 1169138 23862215 ~ 23865800 (+)
G14354 NA non-coding downstream 72531 25122083 ~ 25122392 (+)
G14363 NA non-coding downstream 95030 25144582 ~ 25144782 (+)
G14383 NA non-coding downstream 220286 25269838 ~ 25270195 (+)
G14444 NA non-coding downstream 308335 25357887 ~ 25359035 (+)
G14445 NA non-coding downstream 310919 25360471 ~ 25360808 (+)
G14326 NA other upstream 24251 25007962 ~ 25010687 (+)
AMCG00016537 NA other upstream 473131 24479706 ~ 24561807 (+)
G14057 NA other upstream 924756 24080017 ~ 24110182 (+)
AMCG00016506 NA other upstream 1089914 23938051 ~ 23945024 (+)
AMCG00016502 NA other upstream 1151992 23866267 ~ 23882946 (+)
AMCG00016558 rpl21,LOC107591224 other downstream 31122 25080674 ~ 25085097 (+)
G14361 NA other downstream 83646 25133198 ~ 25133879 (+)
AMCG00016566 NA other downstream 100796 25150348 ~ 25157461 (+)
AMCG00016584 NA other downstream 320744 25370296 ~ 25404840 (+)
AMCG00016598 NA other downstream 675701 25725253 ~ 25758926 (+)

Expression


Co-expression Network