AMCG00016561


Basic Information

Item Value
gene id AMCG00016561
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25016040 ~ 25020221 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016561
CCCGACTCCTCTCTGCTGAACAGCGGGCACGGGCGGCGCTTTTACGACACTGCCGTGCGTGGATTGGCGACGCTTTGCGACACTGCCGTGCGTGGATGTCTGGCTTTCTAGTGAGTAGATACCGGCAGCCAGAGCGAGAGAGCAGCGAGGGGCGCAGCTGCAGTGGCAATAAGCGCAATAGGGGGAAGAGGACATTGACATACCACCGGGGAGACGTGCTGCTGAAGACAACCGTGCATCTCTCCGACCGGGACGGACAGACACAGCGCCGCTACATGCAGCACATCCACCCGGCGTGGGAGCAGCGCCAGGGAAGACCGCTAACCGTTTGAAGCCCGGACTTAGCAGGAGTTGCTTCCCAAGCGGCGCTTTCGcctggttttgtttggtttggttttgaagACGCACTCATTACAGTGacgatacaaaacaaaaccaggagaCACGGAAAAATGGACTATGATTTCAAAGTGAAGCTGAccggagagagggagcgagtgGAGGACCTGTTTGAATATGAGGGCTGCAAAGTTGGACGAGGCACTTACGGGCATGTGTTCAAAGCCAAGAGGAAAGACGGCCCCTCCCACCGCCATGAAAGGGTTTCCTCTATTCCCGTGCCCATGGCTCTCTCATcagagaagcagcagcagcaggagtgGCCAAGCCAGACCCAGAAGAGCCACAGTCCAGCGGCCTTATGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006468 protein phosphorylation biological_process
GO:0051301 cell division biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0008353 RNA polymerase II CTD heptapeptide repeat kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016561 True 704 mRNA 0.57 2 25016040 25020221

Neighbor

gene id symbol gene type direction distance location
AMCG00016553 NA coding upstream 96004 24912011 ~ 24920036 (+)
AMCG00016554 nup58 coding upstream 106026 24895102 ~ 24910014 (+)
AMCG00016549 NA coding upstream 149616 24825609 ~ 24866424 (+)
AMCG00016548 plcxd2,LOC103047596,LOC105905211,LOC107663676,LOC108414136,LOC107671354,LOC108256473,LOC107586725 coding upstream 192528 24811850 ~ 24823512 (+)
AMCG00016544 NA coding upstream 254931 24743346 ~ 24761109 (+)
AMCG00016559 cdk8 coding downstream 624 25020845 ~ 25031053 (+)
AMCG00016557 NA coding downstream 14717 25034938 ~ 25049552 (+)
AMCG00016560 NA coding downstream 67390 25087611 ~ 25088937 (+)
AMCG00016568 NA coding downstream 83466 25103687 ~ 25106170 (+)
AMCG00016567 gsx1,LOC106603173,LOC106563638,LOC107560336,LOC107719766 coding downstream 162010 25182231 ~ 25183232 (+)
G14177 NA non-coding upstream 596433 24419358 ~ 24419607 (+)
G14127 eif1ax,EIF1AX,eif1axb,LOC105905255,LOC106563585,LOC106590461,LOC108411992 non-coding upstream 640213 24370326 ~ 24375827 (+)
G14136 NA non-coding upstream 677192 24336970 ~ 24338848 (+)
G14132 NA non-coding upstream 694721 24317800 ~ 24321319 (+)
G13979 lipt2 non-coding upstream 1150240 23862215 ~ 23865800 (+)
G14354 NA non-coding downstream 101862 25122083 ~ 25122392 (+)
G14363 NA non-coding downstream 124361 25144582 ~ 25144782 (+)
G14383 NA non-coding downstream 249617 25269838 ~ 25270195 (+)
G14444 NA non-coding downstream 337666 25357887 ~ 25359035 (+)
G14445 NA non-coding downstream 340250 25360471 ~ 25360808 (+)
G14326 NA other upstream 5353 25007962 ~ 25010687 (+)
AMCG00016537 NA other upstream 454233 24479706 ~ 24561807 (+)
G14057 NA other upstream 905858 24080017 ~ 24110182 (+)
AMCG00016506 NA other upstream 1071016 23938051 ~ 23945024 (+)
AMCG00016502 NA other upstream 1133094 23866267 ~ 23882946 (+)
AMCG00016558 rpl21,LOC107591224 other downstream 60453 25080674 ~ 25085097 (+)
G14361 NA other downstream 112977 25133198 ~ 25133879 (+)
AMCG00016566 NA other downstream 130127 25150348 ~ 25157461 (+)
AMCG00016584 NA other downstream 350075 25370296 ~ 25404840 (+)
AMCG00016598 NA other downstream 705032 25725253 ~ 25758926 (+)

Expression


Co-expression Network