AMCG00016563 (usp12,usp12a,LOC107705210,LOC107591222,LOC107584971)


Basic Information

Item Value
gene id AMCG00016563
gene name usp12,usp12a,LOC107705210,LOC107591222,LOC107584971
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25073170 ~ 25080493 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016563
CTTGTGGTCAAttggaaacactttaaaaacagcGTCATAAAAAGCAACATTGAGCCCTGCGTGATTACCATTGCAcaaacttttaacatttaaggATACCTTTAATTATACCCTggatatataattattattcctaTTAGGCctgtaatgaaaattaaaagttaTAAAGTATTTAGTTGTGTTATGTGGCCACACTGCTCAGTGTGAGGGGATGCGGCGGCGGCTCTAGGACCCGCCAGCGCCGGACGGGCGCCCCTGCCTGCAGTCGGGCTCCGCTCGCTCGGCCTCCCTGCGCACTGTGATTGGGCAGAAGATGGCGCTGGGCGGATGGAAATCCTAATGACAGTTTCCAAAATCGCCTCCATTTGTACCATGgGCGCCAATGCCTCTGCTTTGGAAAAAGAGATTGGCCCAGAGCAGTTTCCTGTCAACGAGCACTACTTCGGCCTAGTCAACTTTGGCAATACGTGCTACTGCAACTCAGTCCTGCAGGCGTTGTATTTCTGCCGGCCGTTCCGGGAGAAGGTGCTGGCGTATAAGAGCCAGCCACGGCGCAAGGAGAGCCTGCTGACCTGCCTGGCCGACCTGTTCCACAGCATCGCCACACAGAAGAAAAAGGTGGGCGTCATCCCCCCGAAGAAGTTCATCACCCGGCTGCGCAAGGAGAATGAGCTGTTCGACAACTACATGCAGCAGGATGCCCACGAGTTCCTCAACTACCTGCTGAACACCATCGCCGACCTGCTGCAGGACGAGCGGAAGCAGGAGAAGCAGAACGGCAGGCTGCCCAACGGCACCCTGGACTCCCAGAACAACAACAGCCCACCACAGCCCACCTGGGTGCACGAGATCTTCCAGGGCACGCTGACCAATGAGACACGCTGCCTCACCTGCGAGACTATCAGCAGTAAAGACGAAGACTTCTTAGACCTGTCGGTGGATGTGGAGCAAAACACCTCCATCACTCACTGCCTCAGGGGCTTCAGTAACACAGAGACGCTGTGCAGTGAGTATAAATACTACTGTGAGGAAATGAAGGTGAAGAAGCTGCCCATGATCCTGGCACTACACCTGAAGCGCTTTAAGTACATGGACCAGCTGCACCGCTACACCAAGCTGTCGTACCGTGTTGTGTTCCCGCTGGAGCTGCGGCTCTTCAACACCTCCGGCGATGCCACCAACCCCGAGCGGCTGTACGACCTGGTGGCCGTGGTGGTGCACTGCGGGAGCGGCCCTAACCGAGGTCATTACATTGCCATAGTGAAGAGCCATGACTTCTGGCTGCTGTTTGATGATGACATCGTGGAGAAGATCGACGCTCAGGCCATCGAGGAGTTCTACGGGCTGACCTCCGAGATCTCCAAGAACTCCGAGTCGGGGTACATCCTGTTCTACCAGTCCCGAGACTGAGCGGGGCGCCACCCAGACCATTCTGGCTGCGCGGCTGCATGGGTGCCCTGTGCAGAGCCTGGTGCTGCCGGGCTGGGTGCCGGTGCCCTGGTGGGGTCGCAGCGCAGGGCGCCACACGGGAGACAAACACTCTGCCACACCGGACAGTGGGTTAAATTGctcaggtatcaggtgtcacAGTCACTGACTGACAAAGCTCCTGACTGTGCATTGGAtaaacacacacttatatatacaatcatacacacacacacacacacacgtatacatatagtctctcacacgcacacacaggggTTCCTTTCCTTTCAGACATGATTCTGAAATTCCAGACACCACCTCTTCTCAGTTTTTTCTTAGTTTGTTGAAAGTCTTTCAGAGAAGCTGGTTTGGGTTTTTTTTGGTGCAGGGtttggggtgggtgggggcGTGAGAGAGCTGATagaaggcagagagagggatgggatttttttttttaaattttattattacgactgattttgttgttgggttttgtttgttatggGCGTTTTGCCCTTTGTGAGTCGGGCGCTGTTGTAAAGATCGCTCCGTTGGTATGATTCCTGGAGCCCGGGTGTCCAGAGCCGCACCCAGGAGAAGTGCGGCCTCCTGTAAGGGTCTGCCGTGTGGCTGATTGGCTGCCTGATTAATGTCACTTATAGCTGCTCTTGCTTTGACAATTTTGGACACGGCGGTCTCCAACTGGCTCcactttttattgtgtatttgattgCGTTTTAGTTTTAATCCTgacatctccctctccctctctctgtccgtccGGCTCTCTACGGCACAGAGAGCTCAGGGAGCGGTGTCTAAATGCGTGTGACCGATGAATGAATGTATGGGGCACTGTGACTAGCCAGGGTGGGGGACGCATGGAGAGAGAGCGTGTCTGTGCTGTCCTGAAGACGAGTGGACTTGCACGCGTGCTGCtagtggggggcggggggcgggtAGGGCGACTCCGAT

Function

symbol description
usp12a Predicted to enable cysteine-type endopeptidase activity and thiol-dependent deubiquitinase. Predicted to be involved in protein deubiquitination. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be active in cytosol and nucleus. Orthologous to human USP12 (ubiquitin specific peptidase 12).
usp12 Enables cysteine-type endopeptidase activity and thiol-dependent deubiquitinase. Involved in protein deubiquitination. Predicted to be located in nucleoplasm. Predicted to be active in cytosol and nucleus.

NR:

description
ubiquitin carboxyl-terminal hydrolase 12

GO:

id name namespace
GO:0016579 protein deubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function

KEGG:

id description
K11842 USP12_46; ubiquitin carboxyl-terminal hydrolase 12/46

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016563 True 2406 mRNA 0.54 9 25073170 25080493

Neighbor

gene id symbol gene type direction distance location
AMCG00016565 NA coding downstream 15600 25056560 ~ 25057570 (-)
AMCG00016564 LOC107584968 coding downstream 71715 24973047 ~ 25001455 (-)
AMCG00016556 NA coding downstream 119537 24930817 ~ 24953633 (-)
AMCG00016555 mtmr6,LOC104951663 coding downstream 178751 24883903 ~ 24894419 (-)
AMCG00016552 NA coding downstream 194943 24875864 ~ 24878227 (-)
AMCG00016570 NA coding upstream 25839 25106332 ~ 25107565 (-)
AMCG00016569 NA coding upstream 44290 25124783 ~ 25133808 (-)
AMCG00016573 NA coding upstream 134574 25215067 ~ 25218658 (-)
AMCG00016572 NA coding upstream 139811 25220304 ~ 25221568 (-)
AMCG00016574 NA coding upstream 143572 25224065 ~ 25234275 (-)
G14311 NA non-coding downstream 166624 24905121 ~ 24906546 (-)
G14245 NA non-coding downstream 292904 24716726 ~ 24780266 (-)
G14222 NA non-coding downstream 388635 24683065 ~ 24684535 (-)
G14218 NA non-coding downstream 454825 24615787 ~ 24618345 (-)
G14214 NA non-coding downstream 466849 24606108 ~ 24606321 (-)
G14400 NA non-coding upstream 41597 25122090 ~ 25122375 (-)
G14472 NA non-coding upstream 324402 25404895 ~ 25405101 (-)
G14487 rpl19,LOC101068736,LOC103368168 non-coding upstream 436496 25516989 ~ 25520096 (-)
G14496 NA non-coding upstream 462553 25543046 ~ 25545725 (-)
G14507 NA non-coding upstream 524287 25604780 ~ 25609059 (-)
AMCG00016562 rnf6 other downstream 57827 25007974 ~ 25015343 (-)
G14305 NA other downstream 191072 24881148 ~ 24882098 (-)
AMCG00016538 smpx,LOC107721880,LOC107590224,LOC107663668,LOC107705278 other downstream 506214 24553692 ~ 24566956 (-)
AMCG00016531 NA other downstream 749712 24309256 ~ 24323458 (-)
AMCG00016505 NA other downstream 1187912 23864581 ~ 23885258 (-)
G14392 NA other upstream 75 25080568 ~ 25083699 (-)
AMCG00016579 NA other upstream 184279 25264772 ~ 25277478 (-)
AMCG00016591 NA other upstream 332823 25413316 ~ 25420371 (-)
G14534 NA other upstream 672502 25752995 ~ 25754472 (-)
G14637 NA other upstream 1001010 26081503 ~ 26083167 (-)

Expression


Co-expression Network