AMCG00016569


Basic Information

Item Value
gene id AMCG00016569
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25124783 ~ 25133808 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016569
CTCTTTCCAGGACTATGAGGCAGTCGGCCCCAGCAAGAGGTCTGCTCGGCCCGTTGACAAAagcagtgtgagagagagcgatgGAGGGCCGTGGCCGGGGGGGGCAGTGAGGTGCACTCTCTGGCCgcggacgaggaggaggaggaagaggaggaggaagaagaaggagagagaggagggagagggcagCGCTGTGCTGGGGCATGATGGGCACTGCCAACGCGGAAGTGGGGTCGGTGGAGCAGGACCCGGCCCTGAACCCTCTGTGCCTGGACTGCGGGCAGCAGCACTGGAGCCGAGAGAACCACCTGTACAACTACCGTCACGAGGTGGACGACGACCTTGTGTGCCACATCTGTCTGCAGCCGCTGGTGCAGCCCCTGGACACGCCCTGCGGACACACCTTCTGCTTCAAGTGCCTGCGCAACTTCCTGCAGGAGAAGGACTTCTGTCCCCTGGACCGCAAGAAGCTGCACTTCAGACTGTGCAGGAAGTCCAGCATCCTGGTGCACAAGCTGCTAGACAAGCTGCCCGTGTCCTGCCCGCTGGCCGCGCCCTCCTGCCCCGATGCCATGCCCCGCTGCGACCTGGAGGCCCACCTCAAACGCAGGTGTCCAGGGGCTCTGAGCCACCAGGCTGGGCTGGAGCGGCGACGCTCTGGCAAGCAGCAGGCAGGTGAGGGGGGTTGCGAGGCAGGGGGTATGCTGACCGACCCCCCTGAAGGCAAGCAGCTACCGGAGCTGGAGAGTGGGGGAGAGTCGCCACCCGGGTGCAGCTCCCATGGCACTACCGACCCCATGTGGACCGACGAACATGGACTGGACAACCCCGCCTTCGAGGAGAGCACTGAGGAGGACAGTGTACACGGTCTGGACTGCTATCCGACGCGCACCAAGCGGCCCCTCAGCCACCCCTGCCTCCACCTGCAGCGCACCAGCAGCACGGGCTCCGCGGGCTGGGACTGCCCCCACGACAGCCCGCCCCTGTCCGCAGAGGAGGGCTGCCCCAAGCCGCCCAGCCTGCCAGAGGGGGAGATTACCTCCATACACATCCAGCGCTGCAACCCGTACATGGAGCTTGGGGTCAGCATTGTCGGCGGTAACGAGACGCCACTCATCAACGTGGTGATCCAGGAAGTGTACCGTGACGGCATCATCGCCCGCGATGGCCGCCTGCTGGCCGGGGACCAGATACTGCAGGTGAACAACATGGACATCAGCAACGTGCCTCACAACTTTGCCCGCACAACCCTGTGCCAGCCCTGCTCCACGCTGCAGCTCACAGTGCTTCGTGAACGCCGCTTCCCTGGCCGCGCCAGTGCTGCAGGGGGTGTTGGTGGAGGGGCTGGGACAGGGGCGTCGGCGGCGGGGGGCACAGAGGGCAGCGGGTCCCCGCGGGACGACAGCCTGCACGTCACACTGCATAAGCGTGATTCGGCCGAGCAGCTGGGCATCAAGCTGGTGCGGCGTACAGACGAGCCGGGTGTGTTCGTGCTGGACCTGCTGGAGGGCGGGCTGGCAGCGCAGGACGGGAGACTGTGCAGCAACGACCGCCTGCTGGGCATCAATGGCCACGACCTGCGGCACGGCACGCCAGAGCTCGCCGCCCAGATCATACAGGCCAGTGGGGAGCGAGTGCACCTGGTGATCTGCAGACCCAGCAAACAGCTGCCCCCCCTGCCCAGCGCCAGCACGGTCCGAGAGACGGGGTGCCACGCCAGCACCCACCCGcacccccaccacccacccCCCGCACCAGTGGCCACACAGCACCAAAGCCCAGCGACCACACAGCACCACAGCCGGCCTGGCACTCACCGGGACCTGTCTCAGTGCGTGACCTGCCAGGAGAAACAGATCAGCGTGAAGAAGGAGCCCCACGAGTCCCTGGGCATGACAGTGGCGGGTGGCCGGGGCAGCAAGAGCGGGGAGCTGCCCATCTTCGTCACGAGCGTCCAGCCTCACGGATGCCTGTCCAGGGACGGACGGATCAAGCGTGGAGATGTGCTGCTCAGCATCAATGGCCTGGACCTGACCAGCCTGAGCCACAGTGAGGCAGTGGCCACTCTGAAGGCCAGCGCGGCCGGCTGCTCCGTGCTGCTTCGGGCGCTGGAGGTGCAGACCATCGAGGAGCAGGCCCAGGCTGCGGAGGAGACACCCCCCGCCCCTCCGCCACACAGCGACTACGACGCCAGCTGGTCTCCCTCCTGGGTCATGTGGCTCGGCCTGCCCAGCATCGTGGGCGGCTACGAGGAGAGCCACGCCAACCAGCCTTTCTTCATCAAGACCATCGTCCTGGGCACGCCCGCCTACTACGATGGCCGCCTCAAGTGTGGGGACATGATCGTGGCAGTGAACGGGCTCTCCACGTCGGGCATGAGCCACTCAGCACTGGTGCCCATGCTGAAGGAGCAGAGAAACAAGGTGGCGCTGACCGTGGTGTCTTGGCCTGGGAGTCTGGTGTAGTCGTGGCCCCAGGGAGAGGGGGGGCATGTGGGACCGTCGCTGCGCTGCTGCCTGGAGGGGCTGGTGTAGCAGGCTACACTGAAACACGGCCAGGCAGGCTGGCACCACTGTTcagctcttgttttttttcttttctgtttttttgtgactttgtggaaaaagagaaacatttagtttttttgttttcagattttgttttggttttgtttgtttttcgttCTCCACCAAATATTTCTTATGAGGTTTTCTGGACACTCCGGGAGGGGGCATGACAGCGTCCTGTACCGGATCTCAGTACCACGCCATCCCTGGCCTTCCTGAGCCCAGCCTAATGGCCCGCCTGAACCTGGCACTGCAGTGCGGGATCGAGCAGCAGAGGCTGGCAGAGGAGCTGTTCTGTGTTGATTGTCGGCCATTGTTGATTAACTCCTGACACCGGGATTCTCTGACTTGCTGTCTCTGAATGTTATTTTCttgctgttgttcttgttgttgtggTCGTTTTGCTTTCGTTCGCTCTGTTTGGCTTTGCGTTTTCGGGGAGCGCGGAGATGGCCAGGCACCGGTGTCCTGGTTACACCAGGAGCTCTGCCTCCTACACTCCCCCGCAGCTGGGTGGAGTATTCTCTCCAAAGGCTACTAAAGCAAAATGTTCAGTCCTGAGTGCAGAGCTGGTTCTTCCTCGATCGCTTGCTGCGGCTGGGCAAGACCATCCCTGCGCCAGGCCGGCCCTGAGACAAATGTACTGCGTCTCACTGCACTCACTTTGGCGTAACGCTTCCTGGTAAAGAAAAGCTTCATCTGCATCCAGGAGTAGAACTGGATCTATACACATGGGCCAGGAGCAGAGGGCTTCTGTTCCCACCCTGCCAGTCTTCCCCAGAGCAGCTGTGCTGCCGCAGGCCGGTGCTCCGGGCGCTGCTCTCTGGCAGGGGTGTATTCCAGCACTGTCCATGTTGAACGTTGCAGCTGCGTTACTGCTCATACTTGCccagtgacctctgaccccatgCACCCCTGGTGCAGAACAGCGCCTCAAGTTTATTCTTCCGTGCTTTCGGGGGAGACAGCATGAATGGcagagcaggaggaagaccaGTCCGCtagtctgtccctctgtctgtctgtctgtctgcccagTCTCGCTCACAGGGGACGGACCTTGATTCTGGaaagagctgctgctgctgttctgccAACAACTGCCCTTTTTTTgtacaagaagaagaaaaaagagagagatgatagagatgaaagcaaaatgtgtttgttgagTTCAGTCTTGGGTTGTCCTCAGTGCCTACTCAGTGCCATGTTTCATACTGCCCCAGTGTGTCCTAGCTAGTAGTGTCTGTGTCTTCAGGGTAGGCTCGGGGGTCCTGTGATGGAGTGGAGGGGTGGTggaggcagaggaagaggaggcacAATGGTCTGGGAAGCTGCCTCCTAAACTCACCTAATGTAATCTGGGCTTCATTCGGCCCCAGCAGCTCAGTGGCCGGCTGCCCACGCTCCCAGAAGCATTATGTTCCTCGTGCTGTATAACAACAAGCCGCCTCCTAGCTACCCAGCCCCTCCCACATTCCCTGGAGAGCCTACTGTCATTCTCTAAACTCCTAGTTTCATAGGTgttggggtgttttttttaagacgGTGGTGTTAAAGATCAGCATACTGCAGGGATCCATTTTCAGCCAAACCCTGTCTGGATCCTCTCTCGGGCTGTGCCAAGACTGAAGGGGGACTTTATCTTTTGATAGTttcaagtgatttaaaaaatgctgttttgaattCTTCTTTGTCCATCCTGTTTTCTGATCGTCATCCGTAATTAATCATTCTTCCTGTTAGCGGCGTATCAAATCTGGGTGAGGACGGGGTGATGTTTTTCCAGTGTCAATTATGTTCTTGTATTTTTCTGCACTCATGCTGTGTGTCCACCGCATGGCgacctctctctccacacatgagtgagtgtgtacaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K10692 LNX1_2; ligand of Numb protein X 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016569 True 4480 mRNA 0.60 10 25124783 25133808

Neighbor

gene id symbol gene type direction distance location
AMCG00016570 NA coding downstream 17218 25106332 ~ 25107565 (-)
AMCG00016563 usp12,usp12a,LOC107705210,LOC107591222,LOC107584971 coding downstream 44290 25073170 ~ 25080493 (-)
AMCG00016565 NA coding downstream 67213 25056560 ~ 25057570 (-)
AMCG00016564 LOC107584968 coding downstream 123328 24973047 ~ 25001455 (-)
AMCG00016556 NA coding downstream 171150 24930817 ~ 24953633 (-)
AMCG00016573 NA coding upstream 81259 25215067 ~ 25218658 (-)
AMCG00016572 NA coding upstream 86496 25220304 ~ 25221568 (-)
AMCG00016574 NA coding upstream 90257 25224065 ~ 25234275 (-)
AMCG00016575 NA coding upstream 101184 25234992 ~ 25237511 (-)
AMCG00016583 NA coding upstream 145847 25279655 ~ 25282226 (-)
G14400 NA non-coding downstream 2408 25122090 ~ 25122375 (-)
G14311 NA non-coding downstream 218237 24905121 ~ 24906546 (-)
G14245 NA non-coding downstream 344517 24716726 ~ 24780266 (-)
G14222 NA non-coding downstream 440248 24683065 ~ 24684535 (-)
G14218 NA non-coding downstream 506438 24615787 ~ 24618345 (-)
G14472 NA non-coding upstream 271087 25404895 ~ 25405101 (-)
G14487 rpl19,LOC101068736,LOC103368168 non-coding upstream 383181 25516989 ~ 25520096 (-)
G14496 NA non-coding upstream 409238 25543046 ~ 25545725 (-)
G14507 NA non-coding upstream 470972 25604780 ~ 25609059 (-)
G14517 NA non-coding upstream 538496 25672304 ~ 25675200 (-)
G14392 NA other downstream 41084 25080568 ~ 25083699 (-)
AMCG00016562 rnf6 other downstream 109440 25007974 ~ 25015343 (-)
G14305 NA other downstream 242685 24881148 ~ 24882098 (-)
AMCG00016538 smpx,LOC107721880,LOC107590224,LOC107663668,LOC107705278 other downstream 557827 24553692 ~ 24566956 (-)
AMCG00016531 NA other downstream 801325 24309256 ~ 24323458 (-)
AMCG00016579 NA other upstream 130964 25264772 ~ 25277478 (-)
AMCG00016591 NA other upstream 279508 25413316 ~ 25420371 (-)
G14534 NA other upstream 619187 25752995 ~ 25754472 (-)
G14637 NA other upstream 947695 26081503 ~ 26083167 (-)
AMCG00016617 NA other upstream 1013702 26147510 ~ 26149543 (-)

Expression


Co-expression Network