AMCG00016578


Basic Information

Item Value
gene id AMCG00016578
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25285129 ~ 25311138 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016578
TTTGAGACGTGCTCCATCCGAGGGGGCTGTCTGTTGGCGTCGGGCTGGCTCTCGCTCAGTGAGCACGGCTGGGCCAGGGGCAGGCGCACGTCTCCTCTGATGCCTGAGAATGGAATATTAACTAGGTACGACCGCATTGCTTTGCTGACGAGGGTGCTGTATCTGGAGCAGCACCTGGTTGCTGTGCGAGTCTCCAATGGTCTCCAGGCCAAGGGCCTCTGGCCACTATCCTGGGCGTATCCGGGCGCCGTGTCCACGGTGGGCGGGAGGCTGGCCATGTCGGAGCGCCGCTGTGGGAAGGGGCAGAAGCTGTACTGCAGCAGCCTGAGCCTTCACCAGGCCCGGGCCCAGGACACTGGCTCCTTCAGCTGCAGATACGACAGCAAGAAGAAGCGGCGGGCCACCGTGTACGTCTACTTCAAAGATGCGTCTACGCCCTTCGTGGAGCTGCATAGCGATATCCCTGAGGTCGTGTACATCATGCAGGGCAGTCCGCTGGTGGTGCCCTGCAGGGTGTCGGCCCCAGACATCCCCGTCACGCTCATCAAGCAGTTTCCAACAGAAAAGCTGATAACAGATGGAACAAATATCAAATGGAACAGCAAGCAAGGCTTTGTGATCCCCTCCCCCTTGTATCGCTATATTGGGCTGCTGTCCTGCGAGACCACGGTGAACGGGCGGCTCTACAGCACTAAATACATAACACACAGGCAAGtcaaTACGATCCTGGATGTGTACCTGAATGCCACCAGTCTTGTGAAGACACTGAAGGGTGACACTCTAGCGCTGAACTGCACCGCGATCATGGAGGCAAACGCCAGGGTGGTCTTCCACTGGAGCTACCCAGGCAAGGTCAACAACACTGCTACTATCAAGAAGCGTATGTTGCAGGGCAGCTCCAACTCCAACCTCTTCTATAGCATTCTGACGATCCGGGGGCTGCGCAGCTCAGACCATGGCCTGTACAGCTGTCGGGTGCAGAGCGGGCCCACCTCCCGCCAAACCAACACCACGGTCCTCGTCTATGAGAAGCCGTTCATCAACCTGAAGTACAGGCACGCGCCCATCGTGGATGTGACCGCCGGGCAGAAGTTCTACAGACTGTCCACCAAGCTCAGAGCCTTCCCGTCGCCGGAGGTCATCTGGCTGAAAGACGGGAAGGTTGCCGCAGAGCAGTGCTCCCGCTACAAAGTGGAGGGCAACTTCCTTGTGATCAGAGACGTGTCGGAGGAGGATGCTGGTGTGTACACTATCCTGGTGGGGATCCAGCAGTACAGCCTGTTCAGAAATCTCACCATCTCACTGGTCGTCAATGTGGAGCCCCATGTGGTGGAGAAGGCCGTGTCCCTGCAGGACCCAGACACCTACCCCCAGGGCAGCCGGCAGGCTCTGCTCTGCACCACCTACGGCTTCCCACCCCCGCGGTTACAGTGGCTCTGGCACCCCTGTCCGAGGACCAGCGGGAAAGGCCTGTGCAAACTCTCACCTCTCACCAGGAGACGCCGTGTGCGGGTGACCGCGAACAGCACGGACTCGGAGAACCCCATCCTGAGCATCACCCAGAGAACGGAGCTGCTGGAGGGGAAGAACAAGGTGCGTTACTCACGCGAAATCCCAAGCGGGTTTAGCGTTGAACTGGAGGAGGTGCCCATGGAGGGGGCAGGGCTGCGGCTGGTGTGCAAAGCCAACAGGTACCTGTACACCGACCTGGCCTGGCACCTGCCCACTCAGCGTGCCACCCAGCTCAGTGGGGTGTGGGCAGAGGGCATGGAGCTGAGCACGGGGCAGTACTCCAACAGCCTGCTGCTGCGTATCTACAACGTCTCCCAGGAGCACGCCGGCATCTACGCCTGCAGTGCCAGGAACGTCCGCACGGGGGAGATCGTCCGGCTGGAGAGCAGTGTGCAGGTCATCGGTGAGTATCTGTGCTGCAGTCCGGTACCCCCACTCACTGCCCACACTGTCAGGATCTCAGGGACCCCACTGAGC

Function

GO:

id name namespace
GO:0002040 sprouting angiogenesis biological_process
GO:0001570 vasculogenesis biological_process
GO:0008016 regulation of heart contraction biological_process
GO:0004672 protein kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016578 True 1989 mRNA 0.60 13 25285129 25311138

Neighbor

gene id symbol gene type direction distance location
AMCG00016581 NA coding downstream 702 25282234 ~ 25284427 (-)
AMCG00016583 NA coding downstream 2903 25279655 ~ 25282226 (-)
AMCG00016575 NA coding downstream 47618 25234992 ~ 25237511 (-)
AMCG00016574 NA coding downstream 50854 25224065 ~ 25234275 (-)
AMCG00016572 NA coding downstream 63561 25220304 ~ 25221568 (-)
AMCG00016580 NA coding upstream 7760 25318898 ~ 25325470 (-)
AMCG00016577 NA coding upstream 15730 25326868 ~ 25347437 (-)
AMCG00016582 NA coding upstream 36307 25347445 ~ 25349142 (-)
AMCG00016593 tagln3b,tagln3,LOC107701685,LOC107705223 coding upstream 42203 25353341 ~ 25357447 (-)
AMCG00016589 NA coding upstream 46749 25357887 ~ 25360682 (-)
G14400 NA non-coding downstream 162754 25122090 ~ 25122375 (-)
G14311 NA non-coding downstream 378583 24905121 ~ 24906546 (-)
G14245 NA non-coding downstream 504863 24716726 ~ 24780266 (-)
G14222 NA non-coding downstream 600594 24683065 ~ 24684535 (-)
G14218 NA non-coding downstream 666784 24615787 ~ 24618345 (-)
G14472 NA non-coding upstream 93757 25404895 ~ 25405101 (-)
G14487 rpl19,LOC101068736,LOC103368168 non-coding upstream 205851 25516989 ~ 25520096 (-)
G14496 NA non-coding upstream 231908 25543046 ~ 25545725 (-)
G14507 NA non-coding upstream 293642 25604780 ~ 25609059 (-)
G14517 NA non-coding upstream 361166 25672304 ~ 25675200 (-)
AMCG00016579 NA other downstream 7651 25264772 ~ 25277478 (-)
G14392 NA other downstream 201430 25080568 ~ 25083699 (-)
AMCG00016562 rnf6 other downstream 269786 25007974 ~ 25015343 (-)
G14305 NA other downstream 403031 24881148 ~ 24882098 (-)
AMCG00016538 smpx,LOC107721880,LOC107590224,LOC107663668,LOC107705278 other downstream 718173 24553692 ~ 24566956 (-)
AMCG00016591 NA other upstream 102178 25413316 ~ 25420371 (-)
G14534 NA other upstream 441857 25752995 ~ 25754472 (-)
G14637 NA other upstream 770365 26081503 ~ 26083167 (-)
AMCG00016617 NA other upstream 836372 26147510 ~ 26149543 (-)
AMCG00016616 sp6,LOC102212756,LOC101463567,LOC100707362,LOC107396441,LOC106564946,LOC103384358 other upstream 845383 26156521 ~ 26159922 (-)

Expression


Co-expression Network