AMCG00016584


Basic Information

Item Value
gene id AMCG00016584
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25370296 ~ 25404840 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016584
GACAGAGGACAAAGTTCTTGCCTCGGCTGTCGTCAGTTTGACACAGTAGgctgctgtattattatttttgggcCCCCATTGCCATATTTGGATCATCCCAGGTTTCGGTAGTGCAATCCACTGAAGAAATGACCCCTTGCAGCACATGTGGGGCCCAAGGAAAAGGGGGTGTCCTGCAGGAGGGGTCAGAGCCAGGGTCCCCAGACGAGGACATAATTTCCAGTTTTTCCAGCAACAGAAACTGCCTTCATTCCCACAGGGTGGTGGGCAGCACTGAGCAGGTTTCCAACAGCCAGCCCAATGGCACACCTATCATGAAAGAGGAAAACATCAAAACCACAAGGCTGAATGACTGGAACACACAGAAACGTTTGGGCGCCAGCGTTCACAGTGATGTGCTGGAGACGGAGAATGACAGGCTGAGCCCGTCCAAGATCATGCGCTTCTTCTCCACACCACGCAAACGATCCAGCTCCAGTTCTGAGAGACCTCAGCCTCCCGCCGTCATGGGCAGCTCCCCCTCCTGGAACGCACTTTCCTCCCTGAAGAAAATGGGCTCCTTCAAGAAGCTCAGATCCACGGTCTTTCAAGGCATCCAGGGCAGGGAGGGCTCAGAAATGGCACTCAAGGAAATGGCTGTGAATGAAGAGGGCAAACATGTCCCCAATGGGGTTGGTGTTACAGTGGAGAGTGTAGAGGACTGCAGGGGCATGGGACAGGGCCTGACCACAGAGGGTTCAGACGCAGAGGATGGAGACGACTCTTTCCTAAGGAATACGCATCGTTCTCGCAGCATCCGCAGGGCCTATGGGGCTGGCCGCATCCCCCTATTGGACACAAGGAGGGGGGACACCCAGCAAAAGAACCTGCAGACCCTTTCTCCCATCGCTCAGGAACCTTGCGGCAGTGAGCCACCTGAGAAGCCAGAGGAGAGTGTCAAGGTGGTTTACAGACGGAGCAAAAGCACTGACAACTTCAACCTCCTCAAGAAAAGCTCTTTCAAACGGAAATCCACATCTAACCTGCCTGAGCTCAAAGCTGCAAATGACAATCAAAAATCTCAAAGGACATTCAGTACCTCTTCTGTGGACCTATTGGATAAGCACCCTGGTAACACAGAGAGGATGTCCAGACGCTGGAGAAGCCCAGTCAGAGCTAAAGACTTCGACCGTGTGCTGAAGCTGGTGAGCAACGTGGCAGATCCAGCAGCTCGGCAGAAGGACAGTTCTTCAAAGAGCTCGGCCTCCGAGAAGAGCAGAAACACCCGGCCTCAAAGCCGTCTGCATGATGACTACTCTCGCCGTGCCTCCTGCTCCTCTGAGCGCGAGCGCCGCCGCTGCCTTTCTCCCAGCCGCAGTTTGGTGACCGTGGCCTCTGGACCAGCTGCCCCCGGGCATCCAGCCTCAGAACCTGCCCCTGCCCACGGACTGCCTGCTTTTCCCAGCAGCCACCCCTCTTGTCACAGCCCAGACTCCCTGTGCCCCCCCAGCCCTCTGACCAGCCCGTCCAGCCCTCTGAGCCCCAGCAGCACTAACAATGAGGTCTTCTATCCTGACGACAGCTGTGAATCAAAGAGCTCCCCTCTGTTTTTCTGCAATGCCCAGCAGCCCATCTCTGAACAGGGACCCAGTCCTGCTCAACCACAAGGCCCCAGCATGGAGAATGCAAAGATCGATACTACCCTACACTGTACCAACCGACACAGCACATTGTCTCTGAGCTCCATGGACAGCGATGGGCGGGCAGAGGGACCGGCTCACAAACCAGGGAAGAGCCCTGTGTGCTTCCAGGACTCAGTCCACACAGTTTACTATGACGATGCAGCTGAGGACAGTGGGATTAGTAGCCAGTCTCAGCTGAGCCTGAACACGGCTTCTGGAGGAGAAGACCGGAAAGAGGAGGGTGCTGCTGAGGAGAAGTGGAGGAGCTCTCAGTCTGCAGAGGACGAGAAGGTTGACGTTCAATCAGTGATCGAGAGAGCGCGGTACTGGGGGAGGGACAGGCCCCGCCCTCGGCCCGTGTCCGATTACAGCCAGCTGATTGAGCGCTCGTGCTCCATCCCTGAAGATGATGTTCCTTTGCCGAGCGAATCAGAGCCGGAGAGCCGGCCCACCATGGCCCAGATCGCCTGGAGCAGGAAGCGTAGGCCCATCTCGGTCATTGGGGGGGTTGAGCTGTTCCCCCCCACCAGTGATGGGACCATGGACTTCCACCATGAACAACCCCAGCGCCCCCCCATCCCATCACACCAAGTGCCCCCATACCGCGGTGTGTCGGCCCGCTTCCGGCCCTGCGTCCTGTCCCAGAGCACCCCCATTGGCCTGGACCGGCTGGGCCGACGGAGACAGATGCGACTGTCCAGCAATGGAGCTGTCAATACTGGAGCCCTTGTGGACGACAATGGCAGCGAAGAGGACTACAGCTTCGACGAGATGGCCGAGGGGAGTCCTCGATACCTGCAGCCTGGGGGAGAGCAGCTCGCTGTTAACGAACTCATCGCGGATGGCACTGTTGTCTATGCAGAGGCACTGTGGGATCATGTTTCCATGGGCGAGCAGGAGCTGGCTTTCAAAGCAGGAGATGTCATTCATGTCCTTGATGCAAATAACAAAGAGTGGTGGTGGGGCAGGATTGAGGACAAACAAGCGTGGTTCCCTTCAAGCTTTGTCAGGCTGCGGGTGAACCAGGAGGACTGCGTGGCCGAGAGCGCAGAGAGCACACTGGATGACACGGACCCCTCCTGCAAAGAGCCGCGGCACAAGAGCTCGGAACACAAAGACCAGATGAGGACCAACGTCATCAAGGAGATCATGAACACAGAGCGGGTCTACATCAAGCACCTGAAGGACATCTGTGAGGGCTATATCAGGCAGTGTCGGAAGCACACAGGCATGTTTAATGATATTCAGCTGAGGACAATATTTGGCAATATTGAAGATATCTACAGATTCCAAAGGAAGTTCTTAAAGGACTTGGAGAAGCAGTACAACAAGGAGGAGCCTCATCGGAGTGAAATCGGCTCCTGCTTCCTTCTGCACCAAGAAGGCTTCTCAATCTATTCGGAGTACTGTAACAATCACCCCAGTGCCTGCACGGAGCTCTCCCACCTGATGAAGCACAGCAAATACCGGCACTTCTTCGAGGCTTGCCGTCTGTTGCAGCAGATGATTGACATTGCCATCGACGGCTTCCTGCTCACCCCGGTGCAGAAGATATGCAAGTACCCCCTCCAGCTGGCAGAGCTGCTGAAGTACACCACGGTGGAGCACAGTGACTATCAGAATATAACCGCTGCGTATGAAGCAATGAAGAACGTCGCTTGCCTTATCaatgagaggaagaggaggctgGAGAGCATTGACAAGATTGCGCACTGGCAGGTCTGCATTTTGACCTGGGAGGGGGAGGATGTTTTGTGTCGGAGCTCCGAGCTCATCCATTCCGGAGAGCTGACGAAAATCACCCGGCAAGGCAAGACTCGGCAGAGGGCCTTCTTCTTGTTCGACCACCAGCTCATATTCTGTAAGAAGGATCTTCTGCGGAGAGACATGCTGTACTACAAAGGCCGCATAGACATGGACCACACAGAGCTGATTGACACGGAAGACGGCAAGGACAGGGACTTTAACATCACCGTGAAAAATGCGTTCAAGCTCCGAGACAAACCCTCTGATGAAGTTTATATGTTCTCTGCGAAGAAGCTGGAAGACAAGCAGAGATGGCTGCTAGCCTTTGCAAACGAGAGGAAAAGGGTGCAGGAAGACGAGGAGATGGgAATGGAAATCagtgaaaaccagaagaaacaAGCAATGctaaatgcaaaaaaatcaaGACAAGGAAAGTTGAAGAGTTTGAGCTACAGTGGATGCCCTGTGCCCCCACCACACCAGGCCCTGCACCCAATGCATCAGCGCCACGTGACGGTGCCCACCAGTGTCCCCCAGCAGCAGGTCTTCTCCCTGGCCGAGCCCAAGAGGAAGCCGTCCCCGTTCTGGCACAGCTTCTCCCGTCTGGCCCCGTTCAAGAAGTGAGGGAATGTGTGGAGTAAGAGCCATTTCATCTGGCGGCAAGGAGTGGAGGACACTTGTAGATATTTCAGTTCTGCTTTTTTTGAGCATATTCCTACCTTATACTTCACAGGAATACTGACAAATGTGTACTctatatggaaatatatatgtattgagCAAAGTTTAGAAATACTTGCATTTTCTATAAGGCTGGATccttttgtaatatttgatgtCCAATTTCTGAGTGTCCATGAGTTTTAATGGTGTGTGCAATATTTCTGAAGTATATCTTGCTTTTAGGGACATTATATTAGAGAAGAGAAATTTTAGTGCTGGTATTAAAGTGAAAGAAGatatatctttcttttttacctaaaactgcaatttctttttctgtgaatctctcacacacactaattTTGACGACCACATAGAAggtgggaagattaaatcatatatttatatgtgtgtgtgtgtatgtatataatgcGTGTGATAAACGGACATATGAAGAAATGATTCTCATGGAGAGAGCCTTTAACTGTCCTTTCAGTGGACTGGCCTGAGTTTGAGCACAATGATTTCCCTGAGCGGGTGGACGTGCTTGCTGAACTTATGGGATGATTCAAAACGTCTCTGTGgacttcaataaaaataaaagcttttgcTTTAATAGTTGAATACATATAATCTTTTAAAAGACACGACATCCAATAGCTGTGTATTGTTGCAGCACTGACAGGcacctgttgttttgttttttttatcatttgttgTGTCTGAAAGctgtgacatttttaattattattatttttttaagttacattttctGGAATGAAGTGGAGACAAGTGGCTTAAACTTTGTTGATGTATTACCTCCACAACTACTGAAAGATTAACAGTGCCATTCCAAAGATCTgctaaaatgttacttttattttgcttaaacATTTACCATTTTGCCTCTTGAAGCTTGAATTATGTGAAGGATTACAAGTTACAAGCTGATGCCTGCTTTATACATCTGTACGGTCCATGCTTTTCTATTAATTTCCACTATACTTCAAATGCTGTCATTCTGCAGTATGAACATATACcacaaagtataaatataggccctgtataaaaaacaccaaactcatattaaaatgatgtgaCCCACAAAATGTGAGAAGTATgcttcttttcatttggtctgctcttatgaaaatcaaatatattttcaaatgtaaaatttgCACGTTTACACTATGATACAATATgtattacactttaaaaatgtatttctccaaGTACAAATTATAAGCAATATTGTGTATTTCATAGAAACAaa
>TU17920
GGACAAGTGCGCCTGGTTTCGGGTTGAAGGATGATGCAGATACTACTTTAAACAGTGACTTACATACACACCACTGGGTGTGCGGACTTCAACAATACCGGCTGGCTTGTATTGCCGTGCCAggttgtatatgtgtgtgttatttccAGTggacagtgtgttgtgtgcagaAGTGCGGTGGAGTCAGTGGGGAGATAAGTTCACTCACTTTACCCTCCAGCTCCGGCGCAGATCCGACTGTGAAAATGCGATATTGTCCGTCTCTTTCCATAACAAGGACACACGTATCTGTTTGGATATATGAATGAGAGGGCGTGGAAGCCTTTCTAAATTTGCCTCTGTTGCTTAGCCGTGGATTTTAAAGAAGCTACCTACtgaaaagaacaagaaagaacATTAATCTCCCCAAACAAGCACTCCACAATGATGGCAAAGAGAACCTGCTTGAGATCTATCAGCACTCCAAACCTTGTAGTGCAATCCACTGAAGAAATGACCCCTTGCAGCACATGTGGGGCCCAAGGAAAAGGGGGTGTCCTGCAGGAGGGGTCAGAGCCAGGGTCCCCAGACGAGGACATAATTTCCAGTTTTTCCAGCAACAGAAACTGCCTTCATTCCCACAGGGTGGTGGGCAGCACTGAGCAGGTTTCCAACAGCCAGCCCAATGGCACACCTATCATGAAAGAGGAAAACATCAAAACCACAAGGCTGAATGACTGGAACACACAGAAACGTTTGGGCGCCAGCGTTCACAGTGATGTGCTGGAGACGGAGAATGACAGGCTGAGCCCGTCCAAGATCATGCGCTTCTTCTCCACACCACGCAAACGATCCAGCTCCAGTTCTGAGAGACCTCAGCCTCCCGCCGTCATGGGCAGCTCCCCCTCCTGGAACGCACTTTCCTCCCTGAAGAAAATGGGCTCCTTCAAGAAGCTCAGATCCACGGTCTTTCAAGGCATCCAGGGCAGGGAGGGCTCAGAAATGGCACTCAAGGAAATGGCTGTGAATGAAGAGGGCAAACATGTCCCCAATGGGGTTGGTGTTACAGTGGAGAGTGTAGAGGACTGCAGGGGCATGGGACAGGGCCTGACCACAGAGGGTTCAGACGCAGAGGATGGAGACGACTCTTTCCTAAGGAATACGCATCGTTCTCGCAGCATCCGCAGGGCCTATGGGGCTGGCCGCATCCCCCTATTGGACACAAGGAGGGGGGACACCCAGCAAAAGAACCTGCAGACCCTTTCTCCCATCGCTCAGGAACCTTGCGGCAGTGAGCCACCTGAGAAGCCAGAGGAGAGTGTCAAGGTGGTTTACAGACGGAGCAAAAGCACTGACAACTTCAACCTCCTCAAGAAAAGCTCTTTCAAACGGAAATCCACATCTAACCTGCCTGAGCTCAAAGCTGCAAATGACAATCAAAAATCTCAAAGGACATTCAGTACCTCTTCTGTGGACCTATTGGATAAGCACCCTGGTAACACAGAGAGGATGTCCAGACGCTGGAGAAGCCCAGTCAGAGCTAAAGACTTCGACCGTGTGCTGAAGCTGGTGAGCAACGTGGCAGATCCAGCAGCTCGGCAGAAGGACAGTTCTTCAAAGAGCTCGGCCTCCGAGAAGAGCAGAAACACCCGGCCTCAAAGCCGTCT

Function

GO: NA

KEGG:

id description
K05769 ARHGEF4_29, ASEF1_2; Rho guanine nucleotide exchange factor 4/29

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016584 True 5346 mRNA 0.50 13 25385070 25404840
TU17920 False 1646 TUCP 0.52 3 25370296 25391840

Neighbor

gene id symbol gene type direction distance location
AMCG00016571 pan3 coding upstream 107840 25242014 ~ 25262456 (+)
AMCG00016576 NA coding upstream 169756 25200142 ~ 25200540 (+)
AMCG00016567 gsx1,LOC106603173,LOC106563638,LOC107560336,LOC107719766 coding upstream 187064 25182231 ~ 25183232 (+)
AMCG00016568 NA coding upstream 264126 25103687 ~ 25106170 (+)
AMCG00016560 NA coding upstream 281359 25087611 ~ 25088937 (+)
AMCG00016585 NA coding downstream 2387 25407227 ~ 25408906 (+)
AMCG00016588 rpl19,LOC107084780 coding downstream 110639 25515479 ~ 25520165 (+)
AMCG00016587 NA coding downstream 129209 25534049 ~ 25542045 (+)
AMCG00016586 NA coding downstream 148640 25553480 ~ 25559207 (+)
AMCG00016603 NA coding downstream 474506 25879346 ~ 25887229 (+)
G14448 NA non-coding upstream 3920 25363896 ~ 25366376 (+)
G14445 NA non-coding upstream 9488 25360471 ~ 25360808 (+)
G14444 NA non-coding upstream 11261 25357887 ~ 25359035 (+)
G14383 NA non-coding upstream 100101 25269838 ~ 25270195 (+)
G14363 NA non-coding upstream 225514 25144582 ~ 25144782 (+)
G14455 NA non-coding downstream 17603 25422443 ~ 25423026 (+)
G14502 NA non-coding downstream 199799 25604639 ~ 25611689 (+)
G14510 NA non-coding downstream 267419 25672259 ~ 25678349 (+)
G14556 NA non-coding downstream 529111 25933951 ~ 25935581 (+)
G14623 NA non-coding downstream 760790 26165630 ~ 26165982 (+)
AMCG00016566 NA other upstream 212835 25150348 ~ 25157461 (+)
G14361 NA other upstream 236417 25133198 ~ 25133879 (+)
AMCG00016558 rpl21,LOC107591224 other upstream 285199 25080674 ~ 25085097 (+)
G14326 NA other upstream 359609 25007962 ~ 25010687 (+)
AMCG00016537 NA other upstream 808489 24479706 ~ 24561807 (+)
AMCG00016598 NA other downstream 320413 25725253 ~ 25758926 (+)
AMCG00016607 NA other downstream 535688 25940528 ~ 25950176 (+)
AMCG00016625 mllt10,LOC106942732 other downstream 880962 26285802 ~ 26302514 (+)
AMCG00016633 NA other downstream 1022499 26427339 ~ 26433656 (+)
AMCG00016640 NA other downstream 1085098 26489938 ~ 26499242 (+)

Expression


Co-expression Network