AMCG00016593 (tagln3b,tagln3,LOC107701685,LOC107705223)


Basic Information

Item Value
gene id AMCG00016593
gene name tagln3b,tagln3,LOC107701685,LOC107705223
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25353341 ~ 25357447 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016593
CACGCCCCGCCCCCCGCGCAGCCCTTATTACCGCACAGCCGCTGTCCAGCCTTTCAGCACCTCCAGGAGCAAGAGGCGGCGGACGGGAGGGATTGGATTTGCAAACATCGTTGTGTCAAGCCGCACATCCACAGCTGCATAATGGCTAACAGAGGACCCAGCTATGGCCTGAGCCGAGAGGTACAGGAGAAGATTGATCAGAAGTATGACACCGAACTGGAGAGCCGACTGGTAGATTGGATTATAGCCCAGTGTGGTGGCAATGTAGAGCGTCCCCAGCCAGGAAAAACCAACTTCCAGAACTGGCTGATGGACGGCACGATGCTCTGCAGGCTGATAAATAGTCTTTACCCCCGAGGTAAGGAACCCATCAAGAAGATTCCAGAGACACAGATGGCCTTCAAGCAGATGGAGAAGATTTCCCAGTTCCTGAAGGCGGCCGAGGCCTATGGAGTTATTACAACAGACATTTTCCAGACTGTGGATTTATGGGAAGgtaaAGACATGGCAGCAGTGCAGAGGACTCTTATGGCACTGGGCAGCGTGGCCGTGACGAAGGACGATGGATATTATCGGGGAGATCGCAACTGGTTCCATAGGAAGGCGCAGGGCAATCGGCGGGAGTTCTCCGAGGAGCAGCTACGCCAGGGGCAGAGCCTGATTGGCCTGCAGATGGGCAGCAACCGTGGGGCATCTCAGTCGGGCATGACGGGGTATGGCATGCCCCGGCAGATCATGTGACCAGAGACCTGGCGCAGGCAGACGCATGGCGTTATCTCAGTCTCTGGGACGGGGGGCTGCAGCAACTGCGCATAAAGAAGCTTGACCTGACAGCCTTGGAAATCAGTTCCTCAAACGACCATCAAGCCTGGCAGGAAGTGCTTCACACAGACAACCCCCAAGACTGCATTGTAAccaaatgttgaaatgttaaatacagTGCTATGAGTGAGAAGGGAGTGTGCTGTAGAAAACAATGTGTCACAAAATgactgtataaatatttatatttatttattaatgtattttggtcatttttatctttatttaactttatagTGAGTTTATTCAATATTACCACTGTCACATTGTCATGtacttttctgtgtttaaatgcTATTGTCTGTTGGAATAAAATGTCAAGGCTAATCCATTAACCCGGGTTCAGGATGTCTGTTCCTCCGTTGTACAATTATGTTCATTtcgaaattaaacat

Function

symbol description
tagln3b Predicted to be active in cytoskeleton. Is expressed in several structures, including nervous system; pigment cell; pronephric duct; tail bud; and trigeminal placode. Orthologous to several human genes including TAGLN3 (transgelin 3).
tagln3 Predicted to be involved in central nervous system development. Predicted to act upstream of or within negative regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be active in cytoskeleton.

NR:

description
transgelin-3

GO:

id name namespace
GO:0007517 muscle organ development biological_process

KEGG:

id description
K20526 TAGLN; transgelin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016593 True 1217 mRNA 0.49 5 25353341 25357447

Neighbor

gene id symbol gene type direction distance location
AMCG00016582 NA coding downstream 4199 25347445 ~ 25349142 (-)
AMCG00016577 NA coding downstream 5904 25326868 ~ 25347437 (-)
AMCG00016580 NA coding downstream 27871 25318898 ~ 25325470 (-)
AMCG00016578 NA coding downstream 42203 25285129 ~ 25311138 (-)
AMCG00016581 NA coding downstream 68914 25282234 ~ 25284427 (-)
AMCG00016589 NA coding upstream 440 25357887 ~ 25360682 (-)
AMCG00016592 abhd10,LOC106590440 coding upstream 5951 25363398 ~ 25367579 (-)
AMCG00016590 NA coding upstream 63836 25421283 ~ 25423659 (-)
AMCG00016595 LOC106600984,LOC106607252,LOC107754318,LOC105013306,LOC107670909,LOC107745936,LOC107567387 coding upstream 76387 25433834 ~ 25438775 (-)
AMCG00016596 NA coding upstream 81889 25439336 ~ 25449752 (-)
G14400 NA non-coding downstream 230966 25122090 ~ 25122375 (-)
G14311 NA non-coding downstream 446795 24905121 ~ 24906546 (-)
G14245 NA non-coding downstream 573075 24716726 ~ 24780266 (-)
G14222 NA non-coding downstream 668806 24683065 ~ 24684535 (-)
G14218 NA non-coding downstream 734996 24615787 ~ 24618345 (-)
G14472 NA non-coding upstream 47448 25404895 ~ 25405101 (-)
G14487 rpl19,LOC101068736,LOC103368168 non-coding upstream 159542 25516989 ~ 25520096 (-)
G14496 NA non-coding upstream 185599 25543046 ~ 25545725 (-)
G14507 NA non-coding upstream 247333 25604780 ~ 25609059 (-)
G14517 NA non-coding upstream 314857 25672304 ~ 25675200 (-)
AMCG00016579 NA other downstream 75863 25264772 ~ 25277478 (-)
G14392 NA other downstream 269642 25080568 ~ 25083699 (-)
AMCG00016562 rnf6 other downstream 337998 25007974 ~ 25015343 (-)
G14305 NA other downstream 471243 24881148 ~ 24882098 (-)
AMCG00016538 smpx,LOC107721880,LOC107590224,LOC107663668,LOC107705278 other downstream 786385 24553692 ~ 24566956 (-)
AMCG00016591 NA other upstream 55869 25413316 ~ 25420371 (-)
G14534 NA other upstream 395548 25752995 ~ 25754472 (-)
G14637 NA other upstream 724056 26081503 ~ 26083167 (-)
AMCG00016617 NA other upstream 790063 26147510 ~ 26149543 (-)
AMCG00016616 sp6,LOC102212756,LOC101463567,LOC100707362,LOC107396441,LOC106564946,LOC103384358 other upstream 799074 26156521 ~ 26159922 (-)

Expression


Co-expression Network