AMCG00016594 (cacnb1,LOC106600985,LOC103392742)


Basic Information

Item Value
gene id AMCG00016594
gene name cacnb1,LOC106600985,LOC103392742
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25449909 ~ 25483710 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016594
ATGTGGTGGGTGTATGAGGCTCAACTGAGACTGGCTTCTGTCAATGTGGGAATGTACCTGTATGGGCTAGATGACTCAGAGCCGgGCTCTGCAGACTCATACACCAGCAGGCCCTCGGACTCAGATGTGTCTCTGGAAGAGGACCGTGAGGCTCTGCGCAAGGAGGCTGACAGACAGGCCCTTGCCACCCTCGAAAAAGCCAAGACCAAACCTGTGGCCTTTGCTGTTAGGACAAATGTGGGCTATAACTCCGGCCCCAATGATGATGTGCCCGTCCAAGGAATGGCCATCTCCTTTGAGGCCAAGGACTTCCTCCATATCAAAGAGAAGTACAACAATGACTGGTGGATCGGGCGGCTGGTGAAGGAGGGTTGTGAGGTGGGCTTCATCCCCAGCCCAGTCAAGCTGGAGAACACACGTCTACAGCAGGAGCAGAGGATGAGGCAGAGCCGACTGAGCTctagTAAGTCTGGAGGAAACTCCAGCTCCAGCCTGGGGGATGTTGCCACAGGAACACGCAGACCCACTCCACCTGCCACAGCTCATGTGGAGTTGTCCACAGTGGGTTTTGATGTTGACCCCCTCGACCTGGATGCAGAAGAAGCTCCCGAGCCCCCCGTTGACTCCCGCTCCCCAAAAGCCAGTGTCAGCAGCGTCACCTCTCCCCAGGCTAATGCCAAGCGCATCCCCTTTTTTAAGAAGATGGAGCACGTTCCTCCATATGACGTGGTGCCTTCAATGAGACCCATCATCCTGGTGGGGCCGTCTCTCAAGGGCTATGAGGTGACTGATATGATGCAAAAGGCACTCTTTGATTTCCTCAAACACAGGTTCGATGGCAGAATATCAATCACACGGGTGACGGCTGATATCTCTCTGGCTAAGCGCTCGGTGCTCAACAACCCCAGCAAGCACACCATCATTGAACGCTCCAGCACTCGATCCAGCCTGGCGGAGGTGCAAAGTGAGATTGAGCGGATCTTTGAGCTGGCGCGCACCCTACAGTTGGTTGCCCTGGACGCAGACACCATCAACCACCCCTCTCAGCTGGCAAAGACCTCCCTGGCACCCATCATCGTCTACATCAAGATCGCCTCACCCAAGGTGCTGCAGAGGCTCATCAAGTCCCGAGGGAAATCCCAGGCCAAACACCTCAATGTACAAATGGTGGCAGCGGACAAACTAGCTCAGTGTCCCCCTGAGCTCTTTGATATCATCCTGGATGAGAACCAGCTGGAGGACGCCTGTGAGCACTTGGCTGACTATCTGGAGGCATACTGGAAGGCCACGCACCCTCCCAGCAgcaacccccccaaccccctgcTCAACCGCACCATGGCCACCGCGGCCCTGGCTTCCTCCCCTGCCCCTGTCTCCAACCTGCAGGGCCCGTACTTGGTGCATGGAGAACAGAAGCGGGATGGGCCTCTGTCTGACAGGACTGGGCTTCATGACTACCAGAGTGACCCAGGGGGCAAACAGCACCAACCGCAGATGTACCTGCGCTCGTCGCGGGCCCAGTCGCGGGGTGGGGGGAGCCGGGGGCTGTCACGGCAGGACACCTTCGACTCGGAGACGCAGGGCAGCCGTGATTCGGCCTACACTGAAGCGGGAGACTCCTGCATGGACATCGAAACAGACCCCTACGAGGAGCCCGAGCCATATCGCGGGGGAGCACGGTTGCATCTCAGCCAGCACCAGCACCGCCAGGCCTCCTGGGAAGATGAGGGCGCTGAGCCTGACCAGGAGAACCTCAATCGGGCCACCATGCACGAGAACCGAGCCAAGGCCCGGGAGAGGTACTGCCAGGGCCAGGAAGCCAGTGAACCCGGAGTGGGCCGCAACAAGAACCAGGAAGACTGGGGGCGGGACGTCTACATCCGCTAG

Function

symbol description
cacnb1 Enables voltage-gated calcium channel activity. Acts upstream of or within muscle contraction and voltage-gated calcium channel complex assembly. Part of voltage-gated calcium channel complex. Is expressed in several structures, including basal plate midbrain region; hatching gland; musculature system; nervous system; and polster. Orthologous to human CACNB1 (calcium voltage-gated channel auxiliary subunit beta 1).

NR:

description
PREDICTED: voltage-dependent L-type calcium channel subunit beta-1-like isoform X8

GO: NA

KEGG:

id description
K04863 CACNB2; voltage-dependent calcium channel beta-2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016594 True 1887 mRNA 0.59 14 25449909 25483710

Neighbor

gene id symbol gene type direction distance location
AMCG00016596 NA coding downstream 157 25439336 ~ 25449752 (-)
AMCG00016595 LOC106600984,LOC106607252,LOC107754318,LOC105013306,LOC107670909,LOC107745936,LOC107567387 coding downstream 11134 25433834 ~ 25438775 (-)
AMCG00016590 NA coding downstream 26250 25421283 ~ 25423659 (-)
AMCG00016592 abhd10,LOC106590440 coding downstream 82330 25363398 ~ 25367579 (-)
AMCG00016589 NA coding downstream 89227 25357887 ~ 25360682 (-)
AMCG00016597 NA coding upstream 127853 25611563 ~ 25642333 (-)
AMCG00016600 fbxl20,LOC107727724,LOC107666314,LOC107665129,LOC107549884,LOC107563017 coding upstream 192859 25676569 ~ 25703327 (-)
AMCG00016599 med1 coding upstream 222371 25706081 ~ 25726547 (-)
AMCG00016601 neurod2,LOC102791336,LOC102193051,LOC101464503 coding upstream 341036 25824746 ~ 25825846 (-)
AMCG00016614 NA coding upstream 621206 26104916 ~ 26117450 (-)
G14472 NA non-coding downstream 44808 25404895 ~ 25405101 (-)
G14400 NA non-coding downstream 327534 25122090 ~ 25122375 (-)
G14311 NA non-coding downstream 543363 24905121 ~ 24906546 (-)
G14245 NA non-coding downstream 669643 24716726 ~ 24780266 (-)
G14222 NA non-coding downstream 765374 24683065 ~ 24684535 (-)
G14487 rpl19,LOC101068736,LOC103368168 non-coding upstream 33279 25516989 ~ 25520096 (-)
G14496 NA non-coding upstream 59336 25543046 ~ 25545725 (-)
G14507 NA non-coding upstream 121070 25604780 ~ 25609059 (-)
G14517 NA non-coding upstream 188594 25672304 ~ 25675200 (-)
G14578 NA non-coding upstream 434320 25918030 ~ 25921548 (-)
AMCG00016591 NA other downstream 29538 25413316 ~ 25420371 (-)
AMCG00016579 NA other downstream 172431 25264772 ~ 25277478 (-)
G14392 NA other downstream 366210 25080568 ~ 25083699 (-)
AMCG00016562 rnf6 other downstream 434566 25007974 ~ 25015343 (-)
G14305 NA other downstream 567811 24881148 ~ 24882098 (-)
G14534 NA other upstream 269285 25752995 ~ 25754472 (-)
G14637 NA other upstream 597793 26081503 ~ 26083167 (-)
AMCG00016617 NA other upstream 663800 26147510 ~ 26149543 (-)
AMCG00016616 sp6,LOC102212756,LOC101463567,LOC100707362,LOC107396441,LOC106564946,LOC103384358 other upstream 672811 26156521 ~ 26159922 (-)
G14676 NA other upstream 698034 26181744 ~ 26184778 (-)

Expression


Co-expression Network