AMCG00016595 (LOC106600984,LOC106607252,LOC107754318,LOC105013306,LOC107670909,LOC107745936,LOC107567387)


Basic Information

Item Value
gene id AMCG00016595
gene name LOC106600984,LOC106607252,LOC107754318,LOC105013306,LOC107670909,LOC107745936,LOC107567387
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25433834 ~ 25438775 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016595
ATGGGTCTTCTCTTTGCCAAATTAATGACAGTGTTCGGAGATCGAGAGCACAAGGTTATCATTGTGGGCCTTGATAACGCAGGCAAGACTACTATTCTCTATCAATTTCTGACCAAGGAGGCTGTGCACACCTCCCCCACCATCGGCAGCAATGTGGAGGAGATTGCAGTGAGGAACACGCGCTTCCTGGTGTGGGACATCGGGGGCCAGGAGAGCCTGCGGACCAGCTGGAACTCCTACTACTGCAACACTGAGATTGTGATCCTGGTGGTggacagcacagacagagagcGCCTCACGCTGACCCGGGAGGAGCTGCACAAGATGCTGGCACATGAGGACCTTCAGAATGCGGCTGTGCTCATTCTGGCCAACAAGCAGGACATGAAGAACTCCATGACTGCTGCGGAGATCTCCCGCTGCCTCACGCTGAGCTCCATCACCGGCCACTCCTGGCACATCCAGGCCTGCTGCGCGCTCACTGGAGAGGGCCTGCCAGCCAGTCTGGACTGGATGAGATCCCACGTTCTCGCCAGCTAAACCCTCAACCAGCTCCAACTACAGCCAACAGAAACCTCAATACTTGAACCAGACCTGGGACATCGAACTCGACTGAGCGGAGTGAGAACCGAACTACTTTCAACTTATTGACTGAAGCAATTTGCTCTCGGCCTGAGTTGCACCTGGCTTGTGATGTCCTGGAGTCGTGGTACTTCTCACCTGCAGCCTCACAGTCCTGTTGGCAGGGCTGCGCTCTTGTGTTTTGGGGGTCAGGTGGGGTTTTCGGGAGACGCTGGTGCTCAATACTAATCCTGTAGTCCACAGACCACTGCGTATGCAATAAGCACGGTACATGCAGGCATCTGCCTGTCTGGACAGTGTGAGCTGAGACTGTGTTTTAATACAGTGATTGACCTGGTTGTCCACAGAACACTAACTGCTCAGGATCGTGATATTGTTCAGCTGCTCTTATTGtgtgaacacaaacacacagacctgATGATCAGTGTGCAAATCATGTGAAGCAGCTCTTGTAAATGGACtgtgttgattttattgttattttgtgttttgttttcaataatagGCTTTTACttgaaatgtacaaaataactAAAGCCCTTGACTGATCAAAATTAGCTATAGTGTCTCTTTTCATCATATTTGTGAAAGCATGCTATATACATTtctagtattgtatttttatatggactcatgtatttttatacaaaaa

Function

NR:

description
PREDICTED: ADP-ribosylation factor-like protein 5B

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07950 ARL5B; ADP-ribosylation factor-like protein 5B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016595 True 1234 mRNA 0.49 6 25433834 25438775

Neighbor

gene id symbol gene type direction distance location
AMCG00016590 NA coding downstream 10175 25421283 ~ 25423659 (-)
AMCG00016592 abhd10,LOC106590440 coding downstream 66255 25363398 ~ 25367579 (-)
AMCG00016589 NA coding downstream 73152 25357887 ~ 25360682 (-)
AMCG00016593 tagln3b,tagln3,LOC107701685,LOC107705223 coding downstream 76387 25353341 ~ 25357447 (-)
AMCG00016582 NA coding downstream 84692 25347445 ~ 25349142 (-)
AMCG00016596 NA coding upstream 561 25439336 ~ 25449752 (-)
AMCG00016594 cacnb1,LOC106600985,LOC103392742 coding upstream 11134 25449909 ~ 25483710 (-)
AMCG00016597 NA coding upstream 172788 25611563 ~ 25642333 (-)
AMCG00016600 fbxl20,LOC107727724,LOC107666314,LOC107665129,LOC107549884,LOC107563017 coding upstream 237794 25676569 ~ 25703327 (-)
AMCG00016599 med1 coding upstream 267306 25706081 ~ 25726547 (-)
G14472 NA non-coding downstream 28733 25404895 ~ 25405101 (-)
G14400 NA non-coding downstream 311459 25122090 ~ 25122375 (-)
G14311 NA non-coding downstream 527288 24905121 ~ 24906546 (-)
G14245 NA non-coding downstream 653568 24716726 ~ 24780266 (-)
G14222 NA non-coding downstream 749299 24683065 ~ 24684535 (-)
G14487 rpl19,LOC101068736,LOC103368168 non-coding upstream 78214 25516989 ~ 25520096 (-)
G14496 NA non-coding upstream 104271 25543046 ~ 25545725 (-)
G14507 NA non-coding upstream 166005 25604780 ~ 25609059 (-)
G14517 NA non-coding upstream 233529 25672304 ~ 25675200 (-)
G14578 NA non-coding upstream 479255 25918030 ~ 25921548 (-)
AMCG00016591 NA other downstream 13463 25413316 ~ 25420371 (-)
AMCG00016579 NA other downstream 156356 25264772 ~ 25277478 (-)
G14392 NA other downstream 350135 25080568 ~ 25083699 (-)
AMCG00016562 rnf6 other downstream 418491 25007974 ~ 25015343 (-)
G14305 NA other downstream 551736 24881148 ~ 24882098 (-)
G14534 NA other upstream 314220 25752995 ~ 25754472 (-)
G14637 NA other upstream 642728 26081503 ~ 26083167 (-)
AMCG00016617 NA other upstream 708735 26147510 ~ 26149543 (-)
AMCG00016616 sp6,LOC102212756,LOC101463567,LOC100707362,LOC107396441,LOC106564946,LOC103384358 other upstream 717746 26156521 ~ 26159922 (-)
G14676 NA other upstream 742969 26181744 ~ 26184778 (-)

Expression


Co-expression Network