AMCG00016599 (med1)


Basic Information

Item Value
gene id AMCG00016599
gene name med1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25706081 ~ 25726547 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016599
CACCGGGAGACGGGACTCGTGCTGGAGGAGCGCCGGTTGCCGTAGGGGCTGACAGAGGAGCGCCTCCTGCTGGTGTAAGGGCTGTTGTCCCGCTCGTAGCTGGAGGAGCGGTGGCGCATGCCGTAGGGACTGTCTGAGCGCTGGCGGCTGCGGCGTGAGGGCTCCCGGTAGGGGCTGGGGCTCTGCTGCGGGGGTCGCCGCCGGTGATGATAGTTGTCCTCCCCATCTTGTCCGTACGCACCCCCGGAGGGGCTGTCATTATCCCCTCGCTTTGGGCTGGGAGACTGGGGGGCAGCGGCCTGCTTCCTCCTGGGGCTGCCTCGGGACGAGGGCTTGCCCTTGGGACTGGCCTTGTAGCTCTTGCCGGACTTGCGATGGCCCTTCTCGCCCCTGTCTTTCTGCGAGGAGCTGCGGGACTCCCCCCGCTCCCCGCGCCTCTGCTGCTTGTCCTTGCGGGATTTCCCCGACCGGCTGCCCCCGTCCTTGCTccgagaggaggaggaggaggaagccGTGCTGGTGCTGGTCCCCAACTGGGCCTGGACAGCAGTGGAGGCTTCGACTCGCTTGCCCACCGCTTCCCCCTCTGGGAATGCCAGTCTCCTGGACCCGGTGGGGAAGGAGGCTGGGGCCGCGGTGACAGCCTTTTCCTTTCCACTCTTGCCTGCTGCCCCCTTTTCCCTATCCTTGCTGCTCTTCTTTTTGgagccccctgccccccctcctcctccacctcctcctcctcctcctccaccccccgAGTCCTTCACTCTGTGAGGGTCCTTGGACTTCTTGTGGGGATGCCTGTGTTTGTGGCCCCGGCTGTCCCCGCTTCCACCCCCTTTACCGTAATCCGAACTGGCTTCCAAGCGCTCCCCGCCGCGGCGATCCGCCGCAGACCTGCCCGCTGGCGGGTCCGAGAAGGTGTCGGAGTCGGAGCTGATGTCGTCATATTCCACTAGAGGCTTGATGGCGCTGACGGCAGGAGGCGCCGCCGAGCCCTGGGTAACAAATGCAGGGCCCGGGCCGATGGCCGAAGATGAAGACTCACGTCCGTGTTTTGAGGATTTGTGCCGCTTGcgtttggtggaggaggaggaagacgaggAGGAGCTGGATTTGAGCAGCAGCTTCCCGTCCTTCCCCGTCATGCTCCCCGCCGAGGAGCTCAAGTGTGGCGGGAGCAGGTGCTGCAATGGCCCGCTGTTAGTGCTCCCCGGCTGCGGCTGCAGCGAAACGTTGGCGCTTGAATCCGGCTTCCTCTTCGTCCCATGATGTCTTTCTGAACCAGGCATTCCTCACGTTAGCAGCGGTCCTTCTCCCAAACGCGGGCCTCTGCAGCCGagacaatacattaaatggcGAATAAAACCCCAAAAGCTCCAGAAAAAAACAGCTAAAAAATAGAgatgttaataaaacaaacaaagattcAGCGCACGTTGTGTCCTTATGCTGTATCCGCGCTCACTCCGGCCAGGTCAGCGGCTTCTCTGCCTTTTGtaggaaaaaacatgtttacagaGAAATAAAACGAAAAAAGGTACTTCTAATAAGCGGTTGAACGTGTAGCTTTATATCTGATGTAAGACGTGTTTAAATATGAAGTCGTTATAGCGTGCTCTCCCTCCCGTTTTCAGGTTACTTGTGCTGTGttatttcttttgtaaaaacaaaaaagcaagaaaaaatcAGCAGCTCTCTGCTATGCCCTCGCCCTGTACGACCCGGGGAAGGAGCTCTAGTCCCTGCAGTTTACGCTCTTGGTTCGGAAACAAGCACAGTCCATGATGAATGGGCGATATTGTTTCaccaaattgaaaatgaaaacttgaaCCGGTTGGTACTGTTTACATGTTCGGTTTTATATATGCAGTCTTTTAATCTCTTTATATTTGATATTGGTCAGCAATGGCAGAATATTCGTGTGCAGTAGATGTTCTAGTTTATTTTGAGTGGCCTTTTGAGTCTACCAGGCCTGTATTTAGGGCGATGTTTGCGGATTTAGAACACCCACTGCCCCGGTTGCTAAGACGAGAGGACAGCCGCCATTGTGGCTCCTTCTAGCAGCTTTAgcttctgttctctctccccctccagccGAAACCGGAAGTCCCGCTGCCTGTCAATCCTGGCCGGCGCTTAGCCCCGCCTCCGTGCCGTGGCGCGCTGCAGCGGCGGAGCAAGACCGCCAGGCGTCGTCCGCCCTGGAAACACTCGGCGCCTCCGCCAGCAGGAAAAGTTTGACACAGACTAGTGAAAGTAACTATTTTAATCAACGAAACGAGAGAATGCACCAGATTGCAACCGTTTCCTCTTGTCTTGACACATCCATGTAACACAGGTGTGCGCTGCATGAGCCGGTGAATGGCAACTTGTTATGAAGCAAGACAACGTGTATATCGATCTATCCTGCGAAGTTCACCATGTTCCTCCACAACGAACCCATTTTATTACCCTTGCACATTCAAGCTTGCTCACTATAAAGCCAACATACTGTATTTTTGATATGCGATCGGGGCCATTTTGTGTGCAAACACAATATCAAAAGCGACTATGACTGCGCTAAATACGCCCGGTGCACGCCGTTTTGGTCATTATTTGTgtctcattttgtattttcccgAGCACGAGTTCTCACTAGTATGCCAGTGGAGACTCTTTCAAGTAAAATGGCGACTGGAGGAACGGTTTTAAATGGCTAATCTCTGCCAATTATAGGTCACGTGTAGTGGTTTGTTTATGGTGTGCAATGGTCGCCtctttaacacaaaataataaagcactAGTTTTCTACTGCGCTATAACTCTACAGTAACTTTAATTACCCCAACGTCTGGTGATGCACTTCATAGCAGCATTACCCTTCCGCAGAAAGCTGCTTGCTGTAGTGTAGGTACGCCATGCAAAGCTCCTCTTCGTGGAAAGCAGCAACTTTCTCCCGGCGGCTACCAtgcaataaataatgtttgggtttcaatcaatcaaaatagCAGCTCATTTAGGCCTTCCGCTCACTTAACTCTGGTTCCCAAATGGTTGCATATATTTGATGATCTCCCCTAaatctataatatatacatacagatttCTATTTGACGTTTTCGCATATTTTAGAGGTGCGTTTGCTCGTTGCTTAGTTTTTCCAGCTATGTTTTGTAAAACTGGCCCAGACAAGCTGAGTTATTGTTTCCCTTCACAATTTGTACGGAGAGGCTCGTTTCTCAAGACAAACATTAAAACGTGTCACcggattttattattttgcgcCACTTCAAACAgtcaaaataactgaaacaagaacaaatacatCGTATGAAACGCACATGTCTGTCTCCAATACTGCTCAAATGTCTGCGGCGTCTCAGACATTCTCCTTTCAAAGGTTGATGATATGTTTTCCAATCTGGCTTGTGTCGTGAGTTTGTCGCCGCCTGATGACGTCACGCCGTCTTCCCCACTCTTGAGCGGCCTGCCGTCTCGGAAGCGCTAGCGAAAGCGACGGAAGGTTTTGTGTCGAAGATGGCGGCGGTGTCGGGGGTTTCTATGCCTGGCTGCAGCCCGGCGAGAGAGCTCGGACCCGGAGCACAGTCTGCCGGGGCACCGACCCCTGGAGACCGGTCCAAAATGGAGGAGAGCACAGAGTCGGAGAAGCAGAGCCGAGTGAGCGCCCTGCTGGACAGGCTTCATGCCAAGCACTGTGCTGCCCGGCCATGGCAGGAGACAAGCAAGGTGGTGCGGCAGGCTATGGAGAAGCGTGGGGTGCCGAATGCTGGGGGTCACCAGCTGTTGCTCACCTGTCTGGAGACCCTGCAGAGAGCCCTGAAGGtgtcttcTCTGCCAGCCATGACTGACCGCCTGGAGTCAATTGCAAGGCAGAATGGGCTTGGGTCTCACCTGAGCCCCTCTGCGACCGAGTGCTATATTACCTCTGACATGTTCTATGTGGAGGTCCAGTTGGACACGGGGGGACAGCTGGTGGATGTCAAGGTGGCCCATCATGGAGAGAACCCAGCAagctgtCCAGAGCTGGTACAGCACCTCAGagacaggaatTTTGAGGAGTTTTCCAAACACCTGAAAGGCTTGGTTAACCTGTATAAACTGCCTGGAGACAAtaaGCTAAAGACAAAGATGTACCTGGCCCTGCAGTCTTTGGAGCTTGACCTCACCAAGATGATGCACATGTTAGCCACCAACGCTAACACTGTGGAGACCATCCTGCACGGCAGTGTGGGATTACTGACTTCCAGGAGTGGAGGTCACCTGGTCACTCTGCAGTGCTATGTGTCTCCCTATGATGTGTTCGAGGAAGGGACCGGTGCACTGCTCAACCTCACCGACTCCAATGTACCTCGGTCCCTGGGAGTCAGTGTGTCCGTGACAATCGAAGGGACTTCCTCCGTGTACAAACTGCCCATCGCCCCTCTCATCACTGGCTCACACCCTGTGGACAACAAAGGGATGGGCAACGCCACTGGGATCCCTGTGTTTGAGATGGCCCCCGCTATGGTGCCCCTCTATGAGCTCATCACCCAAAGCCAACTTCAGGAGGAAGGAGGCGGGACCCTTCCCCCCCACACTCACAACATGCGCTTCTATGCATCCTTGCCAGGCCAGCAGCATTGTTATTTCCTGAATCGGGACGCCCCAGTGCAGGAAGGGCGCTGTCTGCAGGGAGCGCTGGTGGCGAAGATCCCATTTCGCCACCCGGCCCAGGTCCCTGCCCTGCTGGACATTATACGACATCAGGCCGCCTACAACACGCTCATCGGCAGCTGTGTCAAGCGCACCCTGATCAAGGAGGATACCCCCGGGTTGTTGCAGTTTGAAGTGTGTCCGCTGACAGACTCCAGTTTCAGTGTTTCCTTTCAGCACCCTGTCAATGAGTCCCTTGTCTGTGTGGTAATGGAGGTGCTGGAAACACGGCAAGTCTCCTGTAAGCTGTACAAGGGCCTGTCTGACGCCCTGATCTGCACTGATGACTTCATCACCAAGGTGGTGCAAAGgtgTATGTCAATTCCAGTGACCATGCGAGCCATCCGGAGGAAGGCAGAGACCATCCAGGCTGACACCCCAGCACTGTCCCTAATAGCGGAGACTGTGGAGGACATGGTGAAGAAAAATCTACCCCCTGCAGGTAGTCCAGGATACGGCATGGGCACGGGAGGAGGAGGCAACCTGATGGGCATCCCTGGGGGCGGAGGGGGCAGCACACCCACTGGAGGGGGCAGCAGTGGCATGGGCATGGCGGGAGGAGGGGGCGGCAGCTCTTTCTCTGGCCCCATCAGCACCCTCCCCACCCCTCAACCTCCCTCTGTGGGCCCTCAACCCCACCACACCCCGCCACCGGCCTCCTCACCAGCCAGCAACACCAAGAACCACCCCATGCTGATGAATCTGCTGAAGGATAACCCCTCTCAGGACTTCTCCACCCTCTACAGCTCCAGCCCCCTGGAAAGGCAGAACTCCTCTGGGTCGCCACGCACTGACAGCATGGGCGGTGGCTCCTGCCCCGGCAGCGGTGGCAAACCAAAGAAGAAGCGTCCGCGTGGATCTGAGAAGGGAGAAGGTGTACGCGGAGGCATGGGGCTGAAGCAGCAGGGCTCCCTGCAgcaacaccaccaccatcagCATCACCAGACCGAGGATGACTTTCACAGGGAGCTCTTCTCCATGGACGTTGATGCCTCCCAGAACCCCATTTTCGATGTGAACCTGCCTGGAGACGGGCTGGACACCCCCCACAGCATCACGCCGGCTCCCAGTCAGTGTGGGACACCTCCCACTGGGGCTGGGGTGCCGTATCACTCCCAGGCTCACTCCCAGTCCCActcccagcagcagcaacagcagcaacaacagcaacagcagcagcagcagcagcagcagcctcctGGCCTGCCCCGAATGGTGCGTCTCTCCAGCTCTGATAGCATCGGAGCCGACATCAACGAGATCCTGTCGGACATCCCCGAACAGACAACCAAAATGCAGGGAGGAGGCAGCGGTCATGGGCAGCACCATCACAGTCTGGGGGGGGATGACGGGGGGCCTCTAGGTACTCCTATCCGTGACTCTTCTAGCTCTGGCCAGGGCAGTGCAGTGTTCGAGGCCGACCTCTTCAACGCTGGCAGTAATGAGAACCCCTTCACTGACCCGGCTGATCTGATTGCAGAAGCCGCCACAGCAGCCACCCCCAACAGCGACTCCTCCTCCACCAATTTCTTCCCGGACGCAGTGGACTTCAACCCCGAGTTGCTTGCCAGCCAGGGTTTTCCCCCAACCTACTTTGATGACAGCTCGCCCAGTGCAGACGGAGACCTGGACCTGGTAAAAGGGTTTGGGGGGGGGAGCCAGCAGCACACCCCAGCAGGCACCCCACAGAACCCCACCTCCCATGGTCGGTGTACCCCTGATCCCTCCATGAAGGATCCTTTTGAGATGAGCATGGTTTTTGGGGGCAGCGGGGGAGGAGGTAAGCCTCTTTTAGGAGGACCCTTACCTGCTCCTGACTTAGGAGACCCCCACTCGTCCCACTCCGGTGGAGGCCAGAGTCCCCTGTTGATAGGGTTGGGAGACATGGGTGGCACTGACTTCCGAAGCGATTCCAAATCTAAGCAGCAACAGATGATGCGCGGAGGGGGCAAAGAGGGGAACGGAGGAGGGGGGGGCTCAGCTCTGGGAGGTGGAGTTGGGGGGTCCTTGGAAGGGAAGCAAGGCAAGCGCAGTCGCACCCCCTCCAGCGATGGCAAGTCAAAGGAGAAGCCCCCAAAGCGCAAGAAATTGGACCCTGACGGGAAATCCCCCTCCCACAGCTCTGGGGGCCGACCCTACACCCCCCCAAGTGGCAGTGTGGGCTCTGGAGGCTCTATGGGGGGAGGTGGAGGATCCAAATCCCCAGGCAGTTCCGGCCGGTCCCAGACACCCCCAGGAGGCGCAACCCCACCCATCCCCAAAATCACCATCCAGATCCCGAAGGGCACTCTGACGGGGGGAAAGACCTCCTCACATGGGGGCTACACATCCAGCAGCTCAGCTGGGGGGGGCGGCGGGGGAACAGGAGGTGGCGGGGGGAGCAAGAGCCATCActcccactcctcctcctcctcctcgtcggGGAAGATGAAAGGCAGCAAGTTAGAGGGTTCGATGGGGCAAGGCGGTGGGCCCAAGCCAGGGGTCAGTGGTGGCGGCAGTAGTGGAGGGAGCTCCCAGTCTAAGGGCTCCTCCCAGGGACTGGGTGGGGGAAAGCCAGGCTCCTCCCCCATCACAAAGCACGGGTTGGCAGGGGCAGGAGGGGGCGGCAGCATTGGAGGTGGAGGCAAGATGAAGCCGCAAGGGGGCAAACCGCCAGCCTCTCTCATCAACCCCAACATCAAGCCTAACATCTCTCCTTCACACTCCCGTGGTGGCAGTGCCTCCGACAAGCTGTCTTCTCCCATgaagctgcagcagcagcaggtccCCGGCACGCCCCCGTCCTCTAAGGCCAAATCTCCCATGGGATCAGGGGGCGGGGGCTCAGGAGGCGGCTCTAAGTCATCCTCTGGCAGTGCGATGGGGTCTCAGAAGCAGCAGATGGGTGGTACTTCCTCCTCAGGATCGTCGTCTTCCTCATCgagttcctcctcctcctctagctcctcctcttcctcttccagtTCCTCCTCCTTCTCGGCGGGTTCACAGTCGCAGTATGGGGGCGGGGGTGGAGGGTGCAACAATCCCAACGCCAAAGGCAAATCACCCAGCCGCAACAAGAAGCCCTCCCTCACTGCCGTCATTGACAAGCTGAAGCACGGCGTGGGCAccggtggggtggggggtgaggagGGTGTGGACGGAGGCTGTGGGGGTGGCGTTGGGGTGCCTCCCAATATTGGGCCTCCAACGTCCAAGCATGGCCTCTCATCTCAGGGCGGCGAGTACCTGAGCAAGAGGGAAAAGAGCGACAAGGAGGGCAAATCCAAAGTGTCTGTGTCCAGTGGGGGGTCAGGAGACAAGAAAAACATGGACTCCAAAAGCGGGGGTGTGAGCAGCACTGGAGTGGCCAAGATCATCATCAGTAAACCGGACGGGGGCTCACCCAGCATCAAAGCCAAGGTGACCCTGCAGAAGCCCGGTGAGGGCTCAGTGGAGGCCATGAGGTCCCAACTCTCTGGCCCGAAGGCCTATGGCTCACCTCTCTTCAGTGCCTCCACCCCCAAACATGACCGCTGTTCCCCCAGCCACAGCCGCTCACCCGGTTACACCCCGCTCAACCCCGACAGCGAGAGCGAGTCTGGCAGCAGCTCGGTTGCAGAGAACCCAGCTTACCTGCATAATGAAGATGACGACCTCATGGACTCCGCTCTCACCGGCAATCTCCAGCCCTTCAAATAG

Function

symbol description
med1 Predicted to enable nuclear receptor binding activity and transcription coregulator activity. Predicted to be involved in cellular response to thyroid hormone stimulus and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of mediator complex. Orthologous to human MED1 (mediator complex subunit 1).

NR:

description
PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X1

GO: NA

KEGG:

id description
K15144 MED1; mediator of RNA polymerase II transcription subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016599 True 8385 mRNA 0.57 19 25706081 25726547

Neighbor

gene id symbol gene type direction distance location
AMCG00016600 fbxl20,LOC107727724,LOC107666314,LOC107665129,LOC107549884,LOC107563017 coding downstream 2754 25676569 ~ 25703327 (-)
AMCG00016597 NA coding downstream 63748 25611563 ~ 25642333 (-)
AMCG00016594 cacnb1,LOC106600985,LOC103392742 coding downstream 222371 25449909 ~ 25483710 (-)
AMCG00016596 NA coding downstream 256329 25439336 ~ 25449752 (-)
AMCG00016595 LOC106600984,LOC106607252,LOC107754318,LOC105013306,LOC107670909,LOC107745936,LOC107567387 coding downstream 267306 25433834 ~ 25438775 (-)
AMCG00016601 neurod2,LOC102791336,LOC102193051,LOC101464503 coding upstream 98199 25824746 ~ 25825846 (-)
AMCG00016614 NA coding upstream 378369 26104916 ~ 26117450 (-)
AMCG00016615 NA coding upstream 425064 26151611 ~ 26155450 (-)
AMCG00016624 LOC107733370 coding upstream 485839 26212386 ~ 26215060 (-)
AMCG00016629 LOC108438403 coding upstream 578368 26304915 ~ 26309363 (-)
G14517 NA non-coding downstream 30881 25672304 ~ 25675200 (-)
G14507 NA non-coding downstream 97022 25604780 ~ 25609059 (-)
G14496 NA non-coding downstream 160356 25543046 ~ 25545725 (-)
G14487 rpl19,LOC101068736,LOC103368168 non-coding downstream 185985 25516989 ~ 25520096 (-)
G14472 NA non-coding downstream 300980 25404895 ~ 25405101 (-)
G14578 NA non-coding upstream 191483 25918030 ~ 25921548 (-)
G14585 NA non-coding upstream 245239 25971786 ~ 26022263 (-)
G14587 NA non-coding upstream 246987 25973534 ~ 25979563 (-)
G14650 NA non-coding upstream 371181 26097728 ~ 26098972 (-)
G14723 NA non-coding upstream 548630 26275177 ~ 26303459 (-)
AMCG00016591 NA other downstream 285710 25413316 ~ 25420371 (-)
AMCG00016579 NA other downstream 428603 25264772 ~ 25277478 (-)
G14392 NA other downstream 622382 25080568 ~ 25083699 (-)
AMCG00016562 rnf6 other downstream 690738 25007974 ~ 25015343 (-)
G14305 NA other downstream 823983 24881148 ~ 24882098 (-)
G14534 NA other upstream 26448 25752995 ~ 25754472 (-)
G14637 NA other upstream 354956 26081503 ~ 26083167 (-)
AMCG00016617 NA other upstream 420963 26147510 ~ 26149543 (-)
AMCG00016616 sp6,LOC102212756,LOC101463567,LOC100707362,LOC107396441,LOC106564946,LOC103384358 other upstream 429974 26156521 ~ 26159922 (-)
G14676 NA other upstream 455197 26181744 ~ 26184778 (-)

Expression


Co-expression Network