AMCG00016600 (fbxl20,LOC107727724,LOC107666314,LOC107665129,LOC107549884,LOC107563017)


Basic Information

Item Value
gene id AMCG00016600
gene name fbxl20,LOC107727724,LOC107666314,LOC107665129,LOC107549884,LOC107563017
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25676569 ~ 25703327 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016600
CGACGCGAGCGGCAGTGTTTACACTCTCCTCCGCGTCAGCGCCGCGTTTCCCCGCGTCCTCTGCGTGTTTCGGCATCCAGGATGGGGAAGGAGGTGAACGGAGTGTCGCGCAGCCGGTTCGAGATGTTCTCGAACAACGACGAGGCTGTCATCAACAAGAAACTGCCCAAAGAGCTGCTTTTGCGAATCTTCTCATTCCTGGACGTTGTGACGCTGTGCCGCTGTGCTCAGGTCTCACGAGCCTGGAATGTTCTCGCTCTGGACGGCAGCAATTGGCAGAGGATCGATCTCTTCGACTTCCAGAGAGACATCGAGGGACGCGTAGTGGAGAACATCTCAAAACGCTGTGGTGGCTTCTTGAGGAAACTGAGCCTGCGGGGCTGCCTGGGGGTGGGGGACAGTGCACTGAGGACCTTCGCCCAAAACTGCAGGAACATCGAACTGCTCAGTCTGAACGGCTGCACCAAAATCACCGATGCTACCTGTACCAGCCTCAGCAAGTTCTGCCCCAAATTGAAGCACTTGGACCTGGCCTCCTGTACGTCCATTACCAACCTGTCGCTGAAAGCACTCAGtGAAGGGTGCCCCCTGCTGGAACAGCTTAATATCTCCTGGTGTGATCAGGTGACCAAGGATGGCATCCAGGCGCTGGTACGCTGCTGCCCAGTATTAAAGGGGCTCTTCTTGAAGGGCTGTACCCAGCTGGAGGATGAGGCGCTCAAGTACATTGGAGCGCACTGTCCAGAGCTGGTGACACTAAACCTGCAGACCTGCTCGCAGATCACAGATGAAGGGCTGATCACCATCTGCCGGGGGTGTCACCGTCTGCAGTCGCTGTGTGTATCTGGCTGCGCCAACATCACAGACGCCATCCTTAACGCCCTAGGACAGAATTGCCCGAGACTCAGAATACTGGAGGTGGCTCGCTGCTCCCAGCTCACGGACGTCGGCTTCACCACGCTGGCTCGGAACTGCCATGAGCTGGAGAAGATGGATCTAGAGGAATGTGTGCAGATTACAGACAGCACGCTCATCCAGCTGTCCATTCACTGCCCGCGGCTGCAGGTCCTGAGCCTGTCGCACTGTGAGCTGATCACGGACGACGGTATCCGTCACCTGGGCAGCGGCCCCTGTGCCCACGACCGCCTTGAAGTCATCGAGCTGGATAACTGCCCCTTGATCACAGACGCCTCGCTGGAACACCTAAAGACCTGCCACAGCCTGGACCGCATTGAGCTGTACGACTGCCAACAGATCACCAGGGCTGGCATCAAGAGGCTCCGGACGCATCTCCCCAATATCAAAGTCCACGCCTACTTCGCCCCTGTCACCCCACCCCCGTCGGTGGGAGGGAGCAGGCAGAGATTCTGCCGCTGCTGCATCCTGCTATGATGTcactgctgcccccccacctccactcCCCACCTCCCGGACACTGTACAGATACCTAGAGACACTGTAGCTGTGTGAGTATCCCACACATGCGTGCGCCCTCCGCCCACAGGTGTGTGCGTGTCCTATGTTCCTAGCACCTTGCTcccccatccccaccccccacagtGGTGCCAGGTTTCTCTGGGAGCTGGGGGCCCCCCGACAGTCAGGATGACACCAAAATACATCACAGGGCAACGCCTGCGACATTCCTCCCCATCCTCACACGCTGCGCACACAGGATCATGTCAACATTCCCAGGTCATAGCATTAACGGACTCCCTCGTCTTCCCTTTATGATTTTGCAACAGACTAATTCTTCCCAATATTGAATGTTTGGATTTTGCAGGCTCAAGGCTTCTCTGACACGGCCTCATGTCAGGGAGATGCTTCATTGCATATTGATTTGTTCCCCTACTTCTGATGCACTATTAGCGAGTTTGTTGGCTCTGCGCAGTGGCTGTAATCCACCTGAAATGTAATCGAAGCCAATCCGTTCACCAGACGCACAGAATCAAAGGTTGTCTGTCATCCTCCTATACACGAAAGCGTTAACCCTTTTAACTTGTTGTCTGAGCAGGGTTCCCAGTATTGTGCTTTGAAGTACTATCCAGACAATCCAGTCTTGTCGGGTACATCAAACCAGCGTAAACTGCGTtcattcagcaaaaaaaaacaagttttctGTGGGGGTTTACTAGAAGTTAGAAAGTCTGCTTTgagtgcagtttgttttttcagatacAGGTATTCCATGAGATCGTGTTCTCTCACAATTTGTAAAGGACTGACAGaggatgcacaggaacttcctTATAAGATATTATGGAGAAATACAACCGCCACCGTGTGCTCAATAACTGGTGTCCTTCCAAAACAGGCCTCTGGGATCCTCAAACTCGACAGGACCATCAAAGTGCGCAGAATGACTTTTTAACAGACTGGTTCATTTGAAAGGCACACCCATCTTGGATTGTGTGGTTCTCCTCATAGCTGGTGAAGCAAGTATATTCGGTTCTAGTCTATTttaatcagtcaattaaaataaatctctgaaTTGACCCCACTCTGACAACTAGGCATAAAGGGGCAGATTTATAACCTCCCCTACTACACTGAGGAAAGATGTTGTGAGGACTCTCTGTTGTGGATGATGAGTAACAGACCCCctacctctccctcttcccAGTACTTCCTGATTCGCTGCCCTTGATCCTGTGTAGCTCTGGTGcccctcaacacacacagacacaacgtCCCCCTCTCCATTCCACATAGTACTTAagaaattcatatattttttataaaggaaCAATGAGatttaaggaagaaaaaaaactgagaaaatgcCAAATGTTGCATGTTTCAATTatagttttttaatataattgtgtacatatgtaagtactgtatatatcttATCTGTGGGAGCTTCTGCCACTCAGTCATGGACTACACTCCACTGAATCTCACTGTTCAGCCCAGATGTAAAACCTCTGCTCCAGGCATGgaataaaaaagacaacatgGAGGCCGTGAGCACAGCGACAAGCTACAGATGCTCGGATCAAGGAAAGGCTTGTTTTCCCCCCACTGATGCTCATTCATTTTTCAAGCTGGTTACACTTTT

Function

symbol description
fbxl20 Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be part of SCF ubiquitin ligase complex. Orthologous to human FBXL20 (F-box and leucine rich repeat protein 20).

NR:

description
PREDICTED: F-box/LRR-repeat protein 20

GO: NA

KEGG:

id description
K10268 FBXL2_20; F-box and leucine-rich repeat protein 2/20

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016600 True 3064 mRNA 0.51 15 25676569 25703327

Neighbor

gene id symbol gene type direction distance location
AMCG00016597 NA coding downstream 34236 25611563 ~ 25642333 (-)
AMCG00016594 cacnb1,LOC106600985,LOC103392742 coding downstream 192859 25449909 ~ 25483710 (-)
AMCG00016596 NA coding downstream 226817 25439336 ~ 25449752 (-)
AMCG00016595 LOC106600984,LOC106607252,LOC107754318,LOC105013306,LOC107670909,LOC107745936,LOC107567387 coding downstream 237794 25433834 ~ 25438775 (-)
AMCG00016590 NA coding downstream 252910 25421283 ~ 25423659 (-)
AMCG00016599 med1 coding upstream 2754 25706081 ~ 25726547 (-)
AMCG00016601 neurod2,LOC102791336,LOC102193051,LOC101464503 coding upstream 121419 25824746 ~ 25825846 (-)
AMCG00016614 NA coding upstream 401589 26104916 ~ 26117450 (-)
AMCG00016615 NA coding upstream 448284 26151611 ~ 26155450 (-)
AMCG00016624 LOC107733370 coding upstream 509059 26212386 ~ 26215060 (-)
G14517 NA non-coding downstream 1369 25672304 ~ 25675200 (-)
G14507 NA non-coding downstream 67510 25604780 ~ 25609059 (-)
G14496 NA non-coding downstream 130844 25543046 ~ 25545725 (-)
G14487 rpl19,LOC101068736,LOC103368168 non-coding downstream 156473 25516989 ~ 25520096 (-)
G14472 NA non-coding downstream 271468 25404895 ~ 25405101 (-)
G14578 NA non-coding upstream 214703 25918030 ~ 25921548 (-)
G14585 NA non-coding upstream 268459 25971786 ~ 26022263 (-)
G14587 NA non-coding upstream 270207 25973534 ~ 25979563 (-)
G14650 NA non-coding upstream 394401 26097728 ~ 26098972 (-)
G14723 NA non-coding upstream 571850 26275177 ~ 26303459 (-)
AMCG00016591 NA other downstream 256198 25413316 ~ 25420371 (-)
AMCG00016579 NA other downstream 399091 25264772 ~ 25277478 (-)
G14392 NA other downstream 592870 25080568 ~ 25083699 (-)
AMCG00016562 rnf6 other downstream 661226 25007974 ~ 25015343 (-)
G14305 NA other downstream 794471 24881148 ~ 24882098 (-)
G14534 NA other upstream 49668 25752995 ~ 25754472 (-)
G14637 NA other upstream 378176 26081503 ~ 26083167 (-)
AMCG00016617 NA other upstream 444183 26147510 ~ 26149543 (-)
AMCG00016616 sp6,LOC102212756,LOC101463567,LOC100707362,LOC107396441,LOC106564946,LOC103384358 other upstream 453194 26156521 ~ 26159922 (-)
G14676 NA other upstream 478417 26181744 ~ 26184778 (-)

Expression


Co-expression Network