AMCG00016602 (pgap3,LOC107694083,LOC103358570)


Basic Information

Item Value
gene id AMCG00016602
gene name pgap3,LOC107694083,LOC103358570
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25961546 ~ 25973771 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016602
GCGGGCGCAGCGCGGTGCCTCACGGAGGAAGTGGCGCTGCTGGCGGAGACGCGGTGACGTGTGCGCGGCGTGCTGCTCCGGCGGAGCGGGAGGAGATGTCCGGTGAGACGCGCGGCTCGGTGCGGATGGCTTGATCGCCGTCCGTCTCGACGTGTGCCTTCCCCGCCGTGTTCGCCGGGCCGAGGATGAGTCCGTCCCCGCCGAGGGGCTCGCTGCGGCCCCGTCCCGCTGCCTACGTGCTCGTCTTGGGGAGCTTCCTGCTGCTGGCGACTCGGGTCACCGGGTCCAAGGGTGACAAGGAGCCGTTCTACCTGGACTGTGTGAAGCAGTGCGTCCGGGCCAACTGCACCGGAGCCCGGCTGCGCGGCTTCCAGTCCGCCCAGCCGCCCTACATGGCTCTGACAGGCTGGACGTGTCGGGATGATTGCCGTTATCAGTGCATGTGGACCACAGTGGGATTATACCTGGCCGAGGGCTACCGGGTGCCACAGTTCCATGGCAAGtggccATTTGCTCGTTTCCTGTGTTTTGAAGAGCCAGCCTCTGCATTGGCGTCTCTCCTGAACGGCCTGGCCTGTCTGCTGATGCTGCTCCGCTACCGCAGCACCGTCCCACGCCAGTCGCCCATGTACCACACCACCACAGCCTTCTCTCTGGTGTCGCTGAACGCCTGGTTCTGGTCCACAGTGTTCCACACACGGGACACCTACTTGACTGAGAAGATGGATTACTTTTGTGCATCTGCAGTTATCCTGTACTCCATCTACCTGTGCTGTGTGAGAACCTTGGGTCTGCGGCGCCCCGGCCTGTCTAGCGTGGTGGGGGTGATCCTTATCCTGGCTTTCACCTCCCATGTCTCCTATCTTACCTTTGTCCGTTTCGACTATGGGTACAACATGGCTGCCAATGCCACCATTGgcATGATTAACCTGCTATGGTGGCTGTGTTGGTGTTGGGTGAACCGGCGCACACTCCCATACTGGTGGAAATGTGGCGCAGTGGTGGTGCTGCTACACGGGCTGGCATTGCTGGAGCTGTTGGATTTCCCCCCCCTGCTCTGGGTGCTGGACGCCCACGCCATCTGGCATCTCAGCACCGTGCCTGTACACTTCCTCTTCTACAGtttCCTGATTGATGACAGTCTGCACCTTCTCAACACAGAGAAGGCTGGGGTTAAGCTGGAGTAGGAGAGACTACGCCACTTTGCCCACCGCTTCCTGGGGAGCCCTCCAATCAGGGGTCGCAGTAGCTCTCAGAAGTTGGTGGGGATCAGTCTCCCCAGGAACTGCACTTTTTCCTGCTTGAATTGAGTTTTGTTGCCGAATTCTaccttttactttttgtattgttatgttttgtggGTG

Function

symbol description
pgap3 Predicted to enable hydrolase activity, acting on ester bonds. Predicted to be involved in GPI anchor biosynthetic process. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be intrinsic component of endoplasmic reticulum membrane. Orthologous to human PGAP3 (post-GPI attachment to proteins phospholipase 3).

NR:

description
PREDICTED: post-GPI attachment to proteins factor 3

GO:

id name namespace
GO:0006506 GPI anchor biosynthetic process biological_process
GO:0031227 intrinsic component of endoplasmic reticulum membrane cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016788 hydrolase activity, acting on ester bonds molecular_function

KEGG:

id description
K23553 PGAP3, PER1; post-GPI attachment to proteins factor 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016602 True 1364 mRNA 0.60 8 25961546 25973771

Neighbor

gene id symbol gene type direction distance location
AMCG00016605 NA coding upstream 2713 25956131 ~ 25958833 (+)
AMCG00016604 NA coding upstream 28489 25929577 ~ 25933057 (+)
AMCG00016606 NA coding upstream 43401 25906124 ~ 25918145 (+)
AMCG00016603 NA coding upstream 74317 25879346 ~ 25887229 (+)
AMCG00016586 NA coding upstream 402339 25553480 ~ 25559207 (+)
AMCG00016609 NA coding downstream 9186 25982957 ~ 26018921 (+)
AMCG00016608 npepps,LOC106587691 coding downstream 82998 26056769 ~ 26083264 (+)
AMCG00016612 kpnb1 coding downstream 113128 26086899 ~ 26096008 (+)
AMCG00016613 NA coding downstream 125601 26099372 ~ 26102713 (+)
AMCG00016611 socs7 coding downstream 148666 26122437 ~ 26134775 (+)
G14556 NA non-coding upstream 25965 25933951 ~ 25935581 (+)
G14510 NA non-coding upstream 283197 25672259 ~ 25678349 (+)
G14502 NA non-coding upstream 349857 25604639 ~ 25611689 (+)
G14455 NA non-coding upstream 538520 25422443 ~ 25423026 (+)
G14448 NA non-coding upstream 595170 25363896 ~ 25366376 (+)
G14623 NA non-coding downstream 191859 26165630 ~ 26165982 (+)
G14695 NA non-coding downstream 239523 26213294 ~ 26215317 (+)
G14703 NA non-coding downstream 260555 26234326 ~ 26304342 (+)
G14704 NA non-coding downstream 265399 26239170 ~ 26241244 (+)
G14755 NA non-coding downstream 406280 26380051 ~ 26382420 (+)
AMCG00016607 NA other upstream 11370 25940528 ~ 25950176 (+)
AMCG00016598 NA other upstream 202620 25725253 ~ 25758926 (+)
AMCG00016584 NA other upstream 556706 25370296 ~ 25404840 (+)
AMCG00016566 NA other upstream 804085 25150348 ~ 25157461 (+)
G14361 NA other upstream 827667 25133198 ~ 25133879 (+)
AMCG00016625 mllt10,LOC106942732 other downstream 312031 26285802 ~ 26302514 (+)
AMCG00016633 NA other downstream 453568 26427339 ~ 26433656 (+)
AMCG00016640 NA other downstream 516167 26489938 ~ 26499242 (+)
AMCG00016638 krt222 other downstream 553548 26527319 ~ 26548212 (+)
AMCG00016635 NA other downstream 626322 26600093 ~ 26657425 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000047_00138309_00153241 PGAP3 coding CI01000047 null 137918 ~ 153241 (+)