AMCG00016607


Basic Information

Item Value
gene id AMCG00016607
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 25940528 ~ 25950176 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016607
ATGACCCGGCAGTGGGAGGCATACCCCCTGGAGCAGTACTGTCCCTCGCAGGTGATCCGACTGGGCACACTGGCAAGAGGGGTACAGGAATACCAGCTACCCTACCAGAACACACTGCCCCTGCCACTCTTCACCCCCGCAGAAATGGGCACTCGCCTGGGCAGAGGAACTGCCCACGCGGAGGTGGCTCCCAGGCCGGTCTCCATCTCTGATGGAGCCTGCCCAACCAAGAGGGACGTCACCGATATCACCAAGGCCCTTCCCCCGGTCACCCAGCCATTCAGGATGAACTTTGCCAAAGCCCCCAGATCCCTGAGCCGTTCCATGTCACAGGAGGCACAGAGAGGCTGA
>TU18062
TGACCTGTCTTGCGGTTGTGTGGTGAGCTTGATGCTCTGCCAGTCGGCACAGTAGCTCTCTCGTGCTGCTTGGTTCCTCTCCTGCACGCTGCAGCCCAGTTCAGCCCGTGTCAGGCAGTCAGTATATTTTGAGGACAGATCTCGTCGGGAGTCTATGACCCGGCAGTGGGAGGCATACCCCCTGGAGCAGTACTGTCCCTCGCAGGTGATCCGACTGGGCACACTGGCAAGAGGGGTACAGGAATACCAGCTACCCTACCAGAACACACTGCCCCTGCCACTCTTCACCCCCGCAGAAATGGGCACTCGCCTGGGCAGAGGAACTGCCCACGCGGAGGTGGCTCCCAGGCCGGTCTCCATCTCTGATGGAGCCTGCCCAACCAAGAGGGACGTCACCGATATCACCAAGGCCCTTCCCCCGGTCACCCAGCCATTCAGGATGAACTTTGCCAAAGCCCCCAGATCCCTGAGCCGTTCCATGTCACAGGAGGCACAGAGAGGCTGAGggggtgaaagagagagagggggtgagagGGTGAGGGAGTAAGTGAGAAAGAGGGAATGACAGGGTTTGGgggtgagagagggaaagagatgAGAGGGGGAGTGAGAGGCAAAAGAGGAGGGTAGGAGAGTGAAAGCGAAGAAGGGAAAGAGGTAACAGAAAATGTGCAGagtgaaaataaagacaaaagaCAGTGAGGAAAAGGAGTGGGaatatttaacagtttttaCACGAAGGCTTATTCTTAATGAGGGCTCATTTGCAGACCTTCATGACCCCCCACCCACGCCATATGAACCTCACTGGCTTTTGAAGTTAGAGCTGAGCAATGAGCTGAGGgactgggtgggggggtgggggtaaatCTATAGGCTACTGATAGAAGATTACATAAGATTAGCCCTCCCCACCCCATCTCATCTCTGCTACCACCCCCAAACCTAGGTTAATGCTctcaaaatgtagttttctcGCCTCATCTTCAGTTTCTGTTGGATAGCAGCACACCTTTTGATATTTTCATGGgtgataatataataaatgtatttcaagttGGCTTTTATGGCAGTGTGTTTCCCCTATTGCAAGCCAATTCCTGTGATCTACTCTTGTGCCCTCAATGCTACTGACTAGCGTACcttcctgtatatatatatttgttgttaaCCAAAGCTGAAACCCAGTGCTGCACCTGTAATCAGATGTGTTCGATAGAAAATTACTGTACTTTTGAAACACGCCACAGTCATGTCAGATGGTCTGGACGAAGGATTTGAAATTGAAGACAAAGTTGCCAAGGTGTCAGAGATATTTAATGCAGTGTCACAGAATCTACAGTTTTCTTTCACTTCTGCCACAAAAGGCACCCTGCAGTAGCATCCAAAAGACACTGAGTTGCAGTTCAATGCCGCATGTGGAGGACTGCAATTGCTTTCCATCTGTGTCAGTGTCGGGGGAAAGTGAATGGCAGTAGTGAATATATCTGGATGAATGATGAGAGTGAAACCAGAAGGAAAGTGGTCCCTACAGTGGCTGTCTGTTACAGTAAGCATCGAGAGAGACAGGTTCATTTGGACGGAGAGTGTTTGAGTACATTGGGATGGATTTCGGAATAGTATTCAATTGTGTAAAAAGGGCACCTTGGTGATTGATGCAAACTTGAATGCGTAGCGGGAATGAGATGTTTTACACAGATCAAGGGCTTAATTTATCTTTGGCATAGAGCAGGTGGGGGATGCCTCAAGTCCTTGAAAAGTCCTCTAGATATTAATATGGCTAAAGCTGCCTGGGCTATACTAGGCTCTGGAAATATCTTGTGTGTCTTTCAGAGCAGTGCAAGTGTATTCACCCCCGGCTCCTGATATCTTTTGGATGGATTGTGCTTGACAGATATGGGAGTGAGTTAGTGATTGTTTTCTCCTTGGTGGTTACCTCTGCCTGAACTGAGCAGAGCTGCTGACTGCGGGGATTTTGAGTGGCCCTCAGTCTGCCCCTTGTAAAACTGATTTTGGCAGTAAAACTTCTCCATGTGTGGAGTAGTGAGGGTCAGGGAGTGGGCATTGACAGCACCCACTTTAATCATCtctgacttgttttttttatatagccaTTGCTTCAtcttatgtgtttatatatatatatatatatatattaaaagcaacGCACACATGTTGAATGGCTTTCTTACAATATGTATAGATGTGTTATCATGGATTATATGGTTTTAACCgattgttagttttattttttatacaataaaatgtgtg
>TU18064
TGACCTGTCTTGCGGTTGTGTGGTGAGCTTGATGCTCTGCCAGTCGGCACAGTAGCTCTCTCGTGCTGCTTGGTTCCTCTCCTGCACGCTGCAGCCCAGTTCAGGCAGTCAGTATATTTTGAGGACAGATCTCGTCGGGAGTCTATGACCCGGCAGTGGGAGGCATACCCCCTGGAGCAGTACTGTCCCTCGCAGGTGATCCGACTGGGCACACTGGCAAGAGGGGTACAGGAATACCAGCTACCCTACCAGAACACACTGCCCCTGCCACTCTTCACCCCCGCAGAAATGGGCACTCGCCTGGGCAGAGGAACTGCCCACGCGGAGGTGGCTCCCAGGCCGGTCTCCATCTCTGATGGAGCCTGCCCAACCAAGAGGGACGTCACCGATATCACCAAGGCCCTTCCCCCGGTCACCCAGCCATTCAGGATGAACTTTGCCAAAGCCCCCAGATCCCTGAGCCGTTCCATGTCACAGGAGGCACAGAGAGGCTGAGgggggaaagagatgAGAGGGGGAGTGAGAGGCAAAAGAGGAGGGTAGGAGAGTGAAAGCGAAGAAGGGAAAGAGGTAACAGAAAATGTGCAGagtgaaaataaagacaaaagaCAGTGAGGAAAAGGAGTGGGaatatttaacagtttttaCACGAAGGCTTATTCTTAATGAGGGCTCATTTGCAGACCTTCATGACCCCCCACCCACGCCATATGAACCTCACTGGCTTTTGAAGTTAGAGCTGAGCAATGAGCTGAGGgactgggtgggggggtgggggtaaatCTATAGGCTACTGATAGAAGATTACATAAGATTAGCCCTCCCCACCCCATCTCATCTCTGCTACCACCCCCAAACCTAGGTTAATGCTctcaaaatgtagttttctcGCCTCATCTTCAGTTTCTGTTGGATAGCAGCACACCTTTTGATATTTTCATGGgtgataatataataaatgtatttcaagttGGCTTTTATGGCAGTGTGTTTCCCCTATTGCAAGCCAATTCCTGTGATCTACTCTTGTGCCCTCAATGCTACTGACTAGCGTACcttcctgtatatatatatttgttgttaaCCAAAGCTGAAACCCAGTGCTGCACCTGTAATCAGATGTGTTCGATAGAAAATTACTGTACTTTTGAAACACGCCACAGTCATGTCAGATGGTCTGGACGAAGGATTTGAAATTGAAGACAAAGTTGCCAAGGTGTCAGAGATATTTAATGCAGTGTCACAGAATCTACAGTTTTCTTTCACTTCTGCCACAAAAGGCACCCTGCAGTAGCATCCAAAAGACACTGAGTTGCAGTTCAATGCCGCATGTGGAGGACTGCAATTGCTTTCCATCTGTGTCAGTGTCGGGGGAAAGTGAATGGCAGTAGTGAATATATCTGGATGAATGATGAGAGTGAAACCAGAAGGAAAGTGGTCCCTACAGTGGCTGTCTGTTACAGTAAGCATCGAGAGAGACAGGTTCATTTGGACGGAGAGTGTTTGAGTACATTGGGATGGATTTCGGAATAGTATTCAATTGTGTAAAAAGGGCACCTTGGTGATTGATGCAAACTTGAATGCGTAGCGGGAATGAGATGTTTTACACAGATCAAGGGCTTAATTTATCTTTGGCATAGAGCAGGTGGGGGATGCCTCAAGTCCTTGAAAAGTCCTCTAGATATTAATATGGCTAAAGCTGCCTGGGCTATACTAGGCTCTGGAAATATCTTGTGTGTCTTTCAGAGCAGTGCAAGTGTATTCACCCCCGGCTCCTGATATCTTTTGGATGGATTGTGCTTGACAGATATGGGAGTGAGTTAGTGATTGTTTTCTCCTTGGTGGTTACCTCTGCCTGAACTGAGCAGAGCTGCTGACTGCGGGGATTTTGAGTGGCCCTCAGTCTGCCCCTTGTAAAACTGATTTTGGCAGTAAAACTTCTCCATGTGTGGAGTAGTGAGGGTCAGGGAGTGGGCATTGACAGCACCCACTTTAATCATCtctgacttgttttttttatatagccaTTGCTTCAtcttatgtgtttatatatatatatatatatatattaaaagcaacGCACACATGTTGAATGGCTTTCTTACAATATGTATAGATGTGTTATCATGGATTATATGGTTTTAACCgattgttagttttattttttatacaataaaatgtgtg

Function

GO:

id name namespace
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:1902495 transmembrane transporter complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016607 False 351 mRNA 0.62 1 25948060 25948410
TU18062 True 2271 TUCP 0.53 2 25940528 25950176
TU18064 False 2184 TUCP 0.46 3 25940528 25950176

Neighbor

gene id symbol gene type direction distance location
AMCG00016604 NA coding upstream 7471 25929577 ~ 25933057 (+)
AMCG00016606 NA coding upstream 22383 25906124 ~ 25918145 (+)
AMCG00016603 NA coding upstream 53299 25879346 ~ 25887229 (+)
AMCG00016586 NA coding upstream 381321 25553480 ~ 25559207 (+)
AMCG00016587 NA coding upstream 398483 25534049 ~ 25542045 (+)
AMCG00016605 NA coding downstream 5955 25956131 ~ 25958833 (+)
AMCG00016602 pgap3,LOC107694083,LOC103358570 coding downstream 11370 25961546 ~ 25973771 (+)
AMCG00016609 NA coding downstream 32781 25982957 ~ 26018921 (+)
AMCG00016608 npepps,LOC106587691 coding downstream 106593 26056769 ~ 26083264 (+)
AMCG00016612 kpnb1 coding downstream 136723 26086899 ~ 26096008 (+)
G14556 NA non-coding upstream 4947 25933951 ~ 25935581 (+)
G14510 NA non-coding upstream 262179 25672259 ~ 25678349 (+)
G14502 NA non-coding upstream 328839 25604639 ~ 25611689 (+)
G14455 NA non-coding upstream 517502 25422443 ~ 25423026 (+)
G14448 NA non-coding upstream 574152 25363896 ~ 25366376 (+)
G14623 NA non-coding downstream 215454 26165630 ~ 26165982 (+)
G14695 NA non-coding downstream 263118 26213294 ~ 26215317 (+)
G14703 NA non-coding downstream 284150 26234326 ~ 26304342 (+)
G14704 NA non-coding downstream 288994 26239170 ~ 26241244 (+)
G14755 NA non-coding downstream 429875 26380051 ~ 26382420 (+)
AMCG00016598 NA other upstream 181602 25725253 ~ 25758926 (+)
AMCG00016584 NA other upstream 535688 25370296 ~ 25404840 (+)
AMCG00016566 NA other upstream 783067 25150348 ~ 25157461 (+)
G14361 NA other upstream 806649 25133198 ~ 25133879 (+)
AMCG00016558 rpl21,LOC107591224 other upstream 855431 25080674 ~ 25085097 (+)
AMCG00016625 mllt10,LOC106942732 other downstream 335626 26285802 ~ 26302514 (+)
AMCG00016633 NA other downstream 477163 26427339 ~ 26433656 (+)
AMCG00016640 NA other downstream 539762 26489938 ~ 26499242 (+)
AMCG00016638 krt222 other downstream 577143 26527319 ~ 26548212 (+)
AMCG00016635 NA other downstream 649917 26600093 ~ 26657425 (+)

Expression


Co-expression Network