AMCG00016610


Basic Information

Item Value
gene id AMCG00016610
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26137776 ~ 26146976 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016610
CTCGGAGGCTCACGGACAGCGAATGTCGTCATGAGCGACCAACAGGACAGCATGGCCGCCACAGCAGCTGTCAGTCCCAGTGAATATCTGCAGCCCTCTGCCACCTCAGCACAGGACTCCCAGCCCTCCCCCCTGGCCCTCCTCGCCGCCACCTGCAGTAAGATCGGCCCCCCTGCAGCCCAGGCACCCGTGAGCAGCACCCCCATCCAGCCAGCTGCCCGCAGGCTGCTGCCCATCAAGCCTGCGCCCATCGCACCAGCGCCACCCAAGAACCTGGGCTTCCTGTCTGCCAAGGGCAGCGTGATCCAGCTGCCTGCTGGGTTGGGCTCCTCAAACCCGGGCGCGCCCCTGCTGCTCACCATCCAGAACCCAGCCATGTTGAGCAAGCCCGGCCGCGCCGGCACCAACATCCAGTACCAGGTGGTGCCGCAGctgcagggtggtggggggcagaCTATCCAGTTAACGGGGATGCACCAGGGTGGCCAATTCCAGATTCTCCCCGGCACCAACCAGGCCATCCTCACCACgccctcccccgcccccccgcagCAGCATAAGACCGTTGCCATCAAGCCCTCCCAGCGGCGGCAGAGCAGCGTGGTGCGTCTGCCCAGCGGCTTCACACTGCCCCTGAGCATGGGGGAGGCGGGGGGCGAGATCGTCACCACAACCGCACCCGCTTCCCCTGTTAAGACCGCTCGCCGCTCCCGCAAGAAGCTGGCTGCTGCCGCGCCCCCCCAGCAGTCCCCCCCTCCAGCCATGGCAATGACTGAGCAGGTGGAGACGCTGCTGATCGAGACGACTGCCGACAACATCATACAGgctGGCAATAACCTGCTGATCGTACAGAACCCGGGCGGGGGGCAGCCGGCCGTGGTGCAGCAGGTGCAGCTGGTGCAGCCCAAGCAGGAGCCGCAGGTGGTACAGATCCCCCCACAGGCACTGAAAGTGGTACAGGCCGCCTCCGCCACCCTGCCACCCGTCCCCCAAAGACAGCCGGCCCCCAGCCTGCAGGTCACGCCCTCCGAGCCCACACAGGTCCTCATCAAGACAGCGTCAGGAGAGTGGCAGACGGTGCAGCTCCAGGAGACCATGGTGGCCACAGCAACATCCCCCTCCAGCTCCGGGGGTGGTGGGCTGGCTTGCCTGCCCTCGGGGGGAGGCAAGAAAGGCGGTCCGGGGGGGCGCAGGGAGCGCACGCTGCCAAAGATCGCACCGGCGGGGGGGCTGCTGGCCCTGAGCGCTGCCCAGCTGTCCTCCGCAGCGCAGGCCGTCCAGACCATCAGCATCAATGGCGTCCAGGTGCAGGGCGTGCCCGTCACCATCACCAACGCCGGCGGCCAGCAGCACCTGACAGTGCAGACGGTGCCAGGCAGTGGGCTGGCGATCGGAGGGGTGGGCGCATCTCAGGGCCACCAGCTGCAGGTGGAGCACACGCTGGCGCTGGACATCCAGGGGGCGCCGGGGGAGAAGAAGCGTCGCATGGCCTGCACCTGCCCCAACTGCAAAGACGCGGAGAAACGGCCGGGGGAGATGGGTAAGAAGAAGCACATCTGCCACATCCCAGGCTGTGAGAAGACGTTCCGGAAGACGTCCTTGCTGCGGGCGCATGTGCGGCTGCACACGGGGGAGCGGCCCTTCGTCTGCAGCTGGGTCTTTTGCGGCAAGCGATTCACACGCAGCGACGAGCTGCAGCGGCACGCCAGGACACACACAgGGGACAAGCGGTTCGAGTGCTCGCAGTGCCAGAAGCGGTTCATGCGCAGCGACCACCTCACCAAGCATTACAAAACGCACATTAACACCAAGAACTTGTGAAGCATATTTAagaaatcataaatatatatatatatatattaaaagaaacgGAAccgtatataaatatatatacaaaagaaaCCGAACTGACTGGGCTCCAGGAGGTGGGCATCCTGTTTGGAGGGGATGACACCCGAGACGTCCCACACCGCCGCCCCCCCAACTGTTAGCCTGCCCCCCGCCAGCACTGGTGCCCCCTCCCCTGCTACGCCTCTACTTCTGACCTTCGTCTGGCTGATGAGGGACCGGACGCTGCCTCATGCTGCCAGGTCAGCAGCGCCCCCCCCCTGGACATGGCAGGAAGCGCATGCCCCCCCCCAGGATTCTGAAAGGATGCTGCCTCCTCCCCCTCAGTTCTAAACTGACCCCTGGCGCCTGGCCGCTCACCCTGCTCACCGCAGCTCGCTTCCTGGACACGGAGAGACGGCGTGCCAAGTGTCCTTCAGCGTGGGCGGTGCGGGGCTGACGGCCCCGTTTTAACCCGTctgttgtaatatatataaatataggatATTGGACTGTGGAGACGCAGAGCAGTGAGGGAGGACAGGAGGCTGCGCAGTGTAACCCAAGTGCAGCACAGAGACGAGTAGCTCCTTCCTGCTCTGtatgaaagtgaaaaaacaaactctcGGAAGATTTTTTCTATTGATAAAGTTGCCTTAGATTAATTGCACCCAGTATTAAAGGAGAATTGTCTATGGTGAGGACGCGCTCCACTCGGCTTTTTGgtcatttcagtttatttattttttgtttactttttatttctcattgctAAAGCCACTCTTTTGCCTCTTTGGTCACTTATTTTCCTCCTTAATTTGCTTTCTGGCTGAATAAAACCCCCAGGCAAGCGAGGGTATGAGGGCTGTGTACGCAGTGTGGAGGGGAGGAGTGGTGCCAAGTGGGGCTGCAGCTACAAGCCTCTGTCAGTCATTCAGGAGTTCATCCAtctctgtttttccatttgtttttagttttgtttagttttattaattttgtttgcctCCTGTCCTCCATGTTTGCTATGAAACCACTGGTGCTGCAGTAAAAACACTCCCCTCTTCTTCCTGCTCCCCAAAACCCAGCTCGTCTCTGTCCCCCAATGCTTCGGCCAGTCAACAGGGTCTTTCCCTCCTGTGGGCTCAGTACAGGAGCTCTCCAGCACAATAGTCTTGTAATCATTGTTGccaacaatttttttttatttgtatttttttattaatggctTGTAAAAGTGTGGCAGCCCTTGGTCTTGTTGTATCTAACaactgtgattttgtttttgtttgttcttaaatcTGCACACTCCTCCTGACGGACAGCACTGAGTTTTGATTGGTTTTGATTGTGACAGAAGAATAGGTTGTGATCGAGGAGCGGCTGTGAAAGACTGGGAATCAGCCCTCTGGGACCAGATATCGGTAATGTTTCGCTTTGGAGCAATAAAGCAACCAGAGACTAAACTCTTAGTATCAAATTGAAGAGCACTAATATGTCTTTGGAcagcttgtttgttgtttttaaaatacagatgtttttaaatcttttaaatatataattaagaaaaagcAATGGTGCCGATTTGTTCCTGGAGCACGAACACTCATGAACTGTGGGCCTCAGCTTAGTCTGTCCGTTTGGTTCTGCCGTTTAACAGACCGGAGTTGAGGTTTTtctcgttttttttgttttcctcagcaGTGCAATGGCTGTGCGTCTAGTGCAGTAATCAGAGCTGGTGTACCTTTACCCTTCAGGGCAGAACATACAAGCAGGACACCATTTCCACATTTGTCAGAGTAAAGACACACCTTGtgcagtattgtgtgtgtgtgtgtgtatgtgtgtgtaccgATACTGAGAGCAAACGGCCGTACTGACCCACTGGCTCCAGCAGAATTCCTTCTCCACTGTCTCGGTTCCTCCCTCCTCTGTTAGACGTCAGCTCCACGGCCGGCTGTGCTGAGGGACTCTTGCCCCTCCCGCACATTAACTGCAGCTCTGCGTCTAGCCAGGCAACCTGGGCCCTGAACAGCACCGGCACTGAACTCGCTTGGCGCTGCTGCGCAGACCCTCGGTTTCCTGCTCcttcattttccttcattttgtttttatttttccttttctctcgtACCAGCTAAGTGAGAACAGTGTTGCTACCCTAATAAACAGACCCGTCTTTCAC

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG:

id description
K09192 SP2; transcription factor Sp2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016610 True 4012 mRNA 0.56 8 26137776 26146976

Neighbor

gene id symbol gene type direction distance location
AMCG00016611 socs7 coding upstream 3001 26122437 ~ 26134775 (+)
AMCG00016613 NA coding upstream 35063 26099372 ~ 26102713 (+)
AMCG00016612 kpnb1 coding upstream 41768 26086899 ~ 26096008 (+)
AMCG00016608 npepps,LOC106587691 coding upstream 54512 26056769 ~ 26083264 (+)
AMCG00016609 NA coding upstream 118855 25982957 ~ 26018921 (+)
AMCG00016621 RPL23,rpl23,rl23 coding downstream 34423 26181399 ~ 26184860 (+)
AMCG00016618 LOC107707532,LOC107675249,LOC103375888 coding downstream 47445 26194421 ~ 26198373 (+)
AMCG00016622 pip4k2b coding downstream 52513 26199489 ~ 26212158 (+)
AMCG00016620 NA coding downstream 86138 26233114 ~ 26237577 (+)
AMCG00016619 NA coding downstream 114756 26261732 ~ 26264293 (+)
G14556 NA non-coding upstream 202195 25933951 ~ 25935581 (+)
G14510 NA non-coding upstream 459427 25672259 ~ 25678349 (+)
G14502 NA non-coding upstream 526087 25604639 ~ 25611689 (+)
G14455 NA non-coding upstream 714750 25422443 ~ 25423026 (+)
G14448 NA non-coding upstream 771400 25363896 ~ 25366376 (+)
G14623 NA non-coding downstream 18654 26165630 ~ 26165982 (+)
G14695 NA non-coding downstream 66318 26213294 ~ 26215317 (+)
G14703 NA non-coding downstream 87350 26234326 ~ 26304342 (+)
G14704 NA non-coding downstream 92194 26239170 ~ 26241244 (+)
G14755 NA non-coding downstream 233075 26380051 ~ 26382420 (+)
AMCG00016607 NA other upstream 187600 25940528 ~ 25950176 (+)
AMCG00016598 NA other upstream 378850 25725253 ~ 25758926 (+)
AMCG00016584 NA other upstream 732936 25370296 ~ 25404840 (+)
AMCG00016566 NA other upstream 980315 25150348 ~ 25157461 (+)
G14361 NA other upstream 1003897 25133198 ~ 25133879 (+)
AMCG00016625 mllt10,LOC106942732 other downstream 138826 26285802 ~ 26302514 (+)
AMCG00016633 NA other downstream 280363 26427339 ~ 26433656 (+)
AMCG00016640 NA other downstream 342962 26489938 ~ 26499242 (+)
AMCG00016638 krt222 other downstream 380343 26527319 ~ 26548212 (+)
AMCG00016635 NA other downstream 453117 26600093 ~ 26657425 (+)

Expression


Co-expression Network