AMCG00016611 (socs7)


Basic Information

Item Value
gene id AMCG00016611
gene name socs7
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26122437 ~ 26134775 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016611
ATGAATAACGGGCAAGATATGTCTCCGGATTTTGTGTTGATGCGTCTGGTCTCTGCCGCCGAGGACGACCACTTGGACGAGGAGAACGGGAATGTGTCGTCCGCCGGCAGTGTGGTGGGCTTCGGGGCTTCGGTGCTGGCGCACCACCACAGCAGCGCCATCAAGAACGGGTTCGAGCTGAACCACGCAGCGGGCCAGCCGCGGCCCACCAGCCCCAACCAGCCGTACAGAGTGCAGCCTGGCAGCGGAACTTGCGCACCTGACGACGGTGTGATGGTAACTCGGCCGTCCCagcctcctccgcctcctcccccTGACTCCGCTATGGCCCAGCGATTCGAGTTCCCTCACCGGGCCAAGGGCTCCCGACCGCAGatcatggtgttcaggaatctCCTACGGGCGGGCGACGGTGGCAGGGAGTGCGGGCTGGAGCAGCAGGGGCTGCCGCTGAGCGACGCCGAGAGGCAGGCTGCGGGCTCCGTGTTCACGGCGAGCCCCGGCGTTAACAACAACTCACACTGCAGCGGGGATTCGCCGCAGCAGCACCTGTCACAGAAGCCACGATGGAGTCTGCATCCCCGAGTGAAACTGCCCCGCTGCCCCGACACCAGCAGCCTCCACCGCGGTGGTCCCGAGCTGTGCCCTCGCCACCGCCTGGCCACAGACCCCCCGGATTGGCCGCCCTCGGCCGGGCTCCTCCTGGACGACAAGTCGACGCACCACGATATCCTAGACCCCAGGTGGGCCGCCACAAAGGGGGGGACTGAACCTCGCCTACCCGGGGATCCCATGTTTGATTTGGCCAGGAAATTCGGGGAGCTGGGGGTGGACAAGGCCTCGAAGATGCTGTTCAAGGAGGGAGAGTTGCCGCACTGCCCTTGCCAGGGCATCCTGGGCCCGGCCAGTGTGGGCATTGGGCCCGGAGAGGACCCTACGGAGACCAGCGACGCCCTGCTGGTCCTGGAAGGGCTGGGGGCAGAGGAGGTGGACGGGCTGGACATCAATAGCTGCTCGGAGGAGGATTTTAATGACAGCAGCGGCCGGGCTTTCATATTGAACGGGAAGGGAGATGTGGTGCAAAAAATTGCAAGCGGCTTCGCCAGCAGCGCCCTGACAGGGCTGATGAGGCAGGCGGAGAGGGCAGTGGGGGAGGGCTGCTGTCCCGGCTACAGAGACCCGCAGGTCTGCTGCCCGCTGCCCGGGCCACCGCAGAGCCGAGCAGGCCCAGACGACAGTGATCAGTTCTCTGACGCGTCCACTCCGATAGGGGTGTCTCCGTGCGGGTCCACACTGGATCTCCCCGCCCCGGCCCAGACCCACACCCAGAGCCCAGCTCCCAAACTGCGGGTGGGCAGGTGCGCCAGCTCGCCCCTGGCACTGTCCGTAGCCGGAGGGGATGCCGACAAAACACTGAGAGTGCCCGGCAAATCCCGGAAGGGCTCTCTGAAAATCCGCCTGAGCAAACTGTTCAGAACTAAAAGTTGCAATGGCTCCAACGACCCACTGGACAAGAGGCCATCGGTGGACCTGGCAGGGAAGCCCCGGCTGACTAGGACTCAAAGTGCCTTCTCTCCCGTCTCCTTCAGCCCCGTCTTCACAGGTGAGACCGTGTCTCTGGTGGATGTGGATATTTCTCGGAGGGGAGTGAACTCTCCACACCCTCCCACGCCCCCTCCGCCCCCGCGTCGCAGCCTTAGTCTGCTCGATGATATAAGTGGGCCGCAGCCAGGGCCTTTCCTAGTGAGTGTTGTTGGGGCTTCCCTGCAgtccctccctctgcctcctcctccttcccatGCCACCATCCAGCATAGCCTCAGCCTCAATGTGCAAGCCCCACCCCCGCTGCTGTGCCCCCTGAGTCGCCCGGACGCCAGCAGCTTTGCAGCCAGCCTGCGGGAGCTGGAGAAGtgTGGCTGGTACTGGGGGCCGATGAACTGGGAGGACGCGGAGATGAAGCTGAAGGGTAAGCCGGACGGCTCGTTCCTGGTGAGGGACAGCTCGGACCCGCGCTACATCCTGAGCCTCAGCTTCCGCTCGCAGAGCATCACACATCACACCCGCATGGAGCACTACAgaggcacatTCAGCCTGTGGTGTCACCCCAAGTTCGAGGACCGCTGCCACTCGGTGGTGGAGTTCATCGAGCGTGCCATCATGCATTCCAAGAATGGCAAGTTCCTCTACTTCCTGCGCTCCCGTGTGCCAGGtctgccccccaccccagtgCAGCTGCTGTACCCTGTGTCTCGCTTCAGTAATGTGAAGTCCCTGCAACACCTCTGCCGCTTCCGCATCCGCCAGCTGGTCAGGATCGACCACATCCAGGAGCTGCCTCTGCCCAAGCCTCTGATCACATACCTGCGGAAATTCTACTACTATGACCCCGAGGAGGAGATGTACCTGTCACTCAAGGAGGCACGCAGCAGCCTGAGGGCGGAGTCAGAGGCAGAGTCTCAGACGTTTCTGGCCGGGTTGGAAGCTGTGAACTGGACAGTGTGGGCGGAGTCACTGACTGAAAGGGGGTGTGCCACCTAGAGCCCAGCCCCTGCTGTCAATCAACAACATGTGGTTCACAAGGTATCTCATCGCTATGGCAACTGAAACTGGAGTATTTCACCCCctcaccccctcctcctctccttcttccCTGATTTGCACATGGAGGGGGTCAGTGGATTTAACTGGAAAAGACTGCGACACTGGAGTCCAAACTGGaataaactgaactgaaaacattAACAGTGAATTTGAGGCTAGACTGTAACCCTTGCTGTCAGTGCTGCcccactcctccctctctctctctccctctcactcactcGCTCCCTGTCTGGGTTCAGTTTGAGGTCAGTCTGTCTGCCGAGCCCAGTTTCCTGCACTGTTAGACAGTCATCCAGCCGAGCTCAGTCCAGTCCGGTTGTCAGCACTGAGAGACGAGTGCATTGGACACAGTGGCCCCTGGCCTGTTTGCTCACTGGACTGAGCAAGGCTGTCTGGCCCTGATCTGCAGCAGCAGTGGGGAGGAAGAGCGTCCAGAGAAGTGTGTTCTCATTCCCGCTGTAGTCCGGGCTGATTGGTCAGGGCCGGGAGCAGCTCTGCTGTTGGCTGAGGAGTGGGCCCTGAGGACAGAGCATTACTGTATAGCCTGACTGCTGCGGGGGGCGAGCGCCAGCACAGTGGAGCACCGAGGAGTGCTGCACAGAGTGAtggagtctgtctgtctgtctgtctgtctctgtcctgctGCGAAGGAGGGAGTGTTGCAGGGACCAGGCCCTCCCCTTGTCTCCCCGCTGTCACTGCTACACACTCCCCATCTTCAACATCTGGCATCACAGCTGGAAACCGCAGAACTGCACTTGGAACAGACTGGAAGAGCAGAACAGCTGAGTCTGGCAGGGCCGTGGTGTCGTAAACacggaggaacggagaaaaaaCTGAAGGAGAACAAATTtatgttaaaaagcaaaatgagTTCAAAGTTCTCTCCTGGTCCCCCTGGATGAAGATGGATGAGGACTgggggggacactgctgctgaaCTCAGAGCTGAACAGCCTGACTGTGAAACTGAAGGAATAGTCCTGCTGTACTGGGGGGGTTGTGGGGAGCATCTGCTGTTActttgaagaaagtgtttagatgatttattttcttatttatttttggttttgagcATTCGTTCGTGGTGTTTGATATGTAAATAGTTGTTCTAcagataccaaaaaaaaagaattgaaaCATGAAGAAATACAGAGCAGACTCTGCGTGGGAGGGGAGGGGTCCCGTTTCCCCTCTTCTCTGGACCCCCGGCCTGCTGAACCGCCTGCTGATGGCCTACAGTAGGCTCTGActcctcttttctctttttttttttgataaataCATTGAGAAGTCGCAGAGAGGGCTGTGGCATTGCACGCgttttatttggaaataaacAGGTTTGTTAGTGAGTTTTAAA

Function

symbol description
socs7 Predicted to enable 1-phosphatidylinositol-3-kinase regulator activity. Predicted to be involved in phosphatidylinositol phosphate biosynthetic process. Predicted to act upstream of or within intracellular signal transduction; negative regulation of signal transduction; and regulation of growth. Predicted to be part of phosphatidylinositol 3-kinase complex. Orthologous to human SOCS7 (suppressor of cytokine signaling 7).

NR:

description
suppressor of cytokine signaling 7, partial

GO: NA

KEGG:

id description
K04699 SOCS6_7; suppressor of cytokine signaling 6/7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016611 True 3970 mRNA 0.59 10 26122437 26134775

Neighbor

gene id symbol gene type direction distance location
AMCG00016613 NA coding upstream 19724 26099372 ~ 26102713 (+)
AMCG00016612 kpnb1 coding upstream 26429 26086899 ~ 26096008 (+)
AMCG00016608 npepps,LOC106587691 coding upstream 39173 26056769 ~ 26083264 (+)
AMCG00016609 NA coding upstream 103516 25982957 ~ 26018921 (+)
AMCG00016602 pgap3,LOC107694083,LOC103358570 coding upstream 148666 25961546 ~ 25973771 (+)
AMCG00016610 NA coding downstream 3001 26137776 ~ 26146976 (+)
AMCG00016621 RPL23,rpl23,rl23 coding downstream 46624 26181399 ~ 26184860 (+)
AMCG00016618 LOC107707532,LOC107675249,LOC103375888 coding downstream 59646 26194421 ~ 26198373 (+)
AMCG00016622 pip4k2b coding downstream 64714 26199489 ~ 26212158 (+)
AMCG00016620 NA coding downstream 98339 26233114 ~ 26237577 (+)
G14556 NA non-coding upstream 186856 25933951 ~ 25935581 (+)
G14510 NA non-coding upstream 444088 25672259 ~ 25678349 (+)
G14502 NA non-coding upstream 510748 25604639 ~ 25611689 (+)
G14455 NA non-coding upstream 699411 25422443 ~ 25423026 (+)
G14448 NA non-coding upstream 756061 25363896 ~ 25366376 (+)
G14623 NA non-coding downstream 30855 26165630 ~ 26165982 (+)
G14695 NA non-coding downstream 78519 26213294 ~ 26215317 (+)
G14703 NA non-coding downstream 99551 26234326 ~ 26304342 (+)
G14704 NA non-coding downstream 104395 26239170 ~ 26241244 (+)
G14755 NA non-coding downstream 245276 26380051 ~ 26382420 (+)
AMCG00016607 NA other upstream 172261 25940528 ~ 25950176 (+)
AMCG00016598 NA other upstream 363511 25725253 ~ 25758926 (+)
AMCG00016584 NA other upstream 717597 25370296 ~ 25404840 (+)
AMCG00016566 NA other upstream 964976 25150348 ~ 25157461 (+)
G14361 NA other upstream 988558 25133198 ~ 25133879 (+)
AMCG00016625 mllt10,LOC106942732 other downstream 151027 26285802 ~ 26302514 (+)
AMCG00016633 NA other downstream 292564 26427339 ~ 26433656 (+)
AMCG00016640 NA other downstream 355163 26489938 ~ 26499242 (+)
AMCG00016638 krt222 other downstream 392544 26527319 ~ 26548212 (+)
AMCG00016635 NA other downstream 465318 26600093 ~ 26657425 (+)

Expression


Co-expression Network