AMCG00016615


Basic Information

Item Value
gene id AMCG00016615
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26151611 ~ 26155450 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016615
ATCAGCTGATAGGAGTCAGTGCGGGCGctgtgagagagggaggctgcTGCTCTGCACTGAAGTCAGCCATAGCCGAGCTCCGGCAATCCGCACACCCCCACGGACACAGACCCGCTGGTGCTCTGAACATCTCTCCCGGGATGGACGACCCACTCTCTGCCCCCTGCGACCCGGCACCGCCAGCCCCCCGCTCCTGCGACTGCTTCGTGGCGCTGCCCCCCGGCTCGCTGGCCGACCAGGTCGTGTTCGGGAAGAACTCGGACCGGCCCCGGGATGAGGTGCAGGAGGTGGTGTACTTCCCCGCTGCCACCTACCCCCCGGGGTCAGAGGTGAAGTGCACCTACATCGAGATTCCGCAGGCTGAGCGCACCCTGGCCGTGGTGCTGAGTCGGCCAGCCTGGCTGTGGGGCGCGGAGATGGAGCTGCTGGAACAACACGGCCAGGGAGGGGCCTGCACCCAGGGGCCCCCGCACCTCAGCTACCACAACACCTTCCTGCTGGCCGACCGCACAGAAGCCTGGGTGCTGGAGACCGCGGGGCGGCTGTGGGCAGCACAAAGGGTCACTgCCGGAGTGAAGAACATCTCGAACCAGCTGTGCATCGGGACGCAGCTGGACGCGGAGCACGTGGGCCTGAGGGAGGAGGCGCAGGCGCGGGGCTGGTGGGACGGCGAGGGGGAGTTCAGCTTCAATGTCGCTTTCTCCCACGAAAACCCCCCCGCCCGCATGGAGGCAGCCAAGAAGAGATACCGCGGAGGAACGGAGCTGCTGCGACAGCACGACGGCTCTGTGTCAGCGGAAGTGCTCATGCAGATCCTGCGGGACCGGCCCAGTGGCATCTGTATGGACTCGGGAGGGTTCCGCACCCAGGCCAGCATGGTGTCCATCCTGCCGCGCGACCCCAGCCTGCCCTGCGTCCACTTCCTCACAGCCACGCCCGACCCCTCCAGGTCTGTGTTCAAGCCCTTTGTGTTTGCGGAGGCGGTGACCCCTGCCCCCCACACAGTCTCCCCACAGGGGGGCGCTGAACATGTGGACAGGCAGCACGAGCTGTACCGAGCGCACCAGGACGCCCTGAGCGCCATGGAGAGGGACCCGtgtcTCAGTGACATCACGGCACTGCTGCAGGAGGGCGTGGCGCGGGGGGGCGGGGAGCTGGGAGACCTTTTCTTCGACTGCGTGGACACGGAGATGAAGTTCTACCTCCAAGTACCCCCTGGAGGAGAGGTACAGACAGAGCAGGCCCGGGACACTGACACCAGactgccctgccctgcctccCCCCCTGAAGCGCCACAGCCTCTGGAACTAACAAGGCAACACGAGCTGAGAGGAGAGAAGCGACGCAGAGTAGTGTGGTCAGAGCCCAGCCCAGCACTGCTGCCCAGCCGGGCCAAGGTCGCCGGTCAGGGGGGTCCATCTTCAGTGACTGCCTGCCTGACTGGCCACCTGCGCCTCAGTgccgagggagggaggggtcaGTCACAGTAA

Function

GO:

id name namespace
GO:0072330 monocarboxylic acid biosynthetic process biological_process
GO:0046031 ADP metabolic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006082 organic acid metabolic process biological_process
GO:0006090 pyruvate metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0006096 glycolytic process biological_process
GO:1901292 nucleoside phosphate catabolic process biological_process
GO:0051188 obsolete cofactor biosynthetic process biological_process
GO:0009108 obsolete coenzyme biosynthetic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0017144 drug metabolic process biological_process
GO:1901361 organic cyclic compound catabolic process biological_process
GO:0046939 nucleotide phosphorylation biological_process
GO:0006732 obsolete coenzyme metabolic process biological_process
GO:0006733 obsolete oxidoreduction coenzyme metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0019362 pyridine nucleotide metabolic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0009132 nucleoside diphosphate metabolic process biological_process
GO:0046394 carboxylic acid biosynthetic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0043436 oxoacid metabolic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0044270 cellular nitrogen compound catabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0072524 pyridine-containing compound metabolic process biological_process
GO:0072525 pyridine-containing compound biosynthetic process biological_process
GO:0009166 nucleotide catabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0046700 heterocycle catabolic process biological_process
GO:0046434 organophosphate catabolic process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0019439 aromatic compound catabolic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0032787 monocarboxylic acid metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0034655 nucleobase-containing compound catabolic process biological_process
GO:0034404 nucleobase-containing small molecule biosynthetic process biological_process
GO:0046496 nicotinamide nucleotide metabolic process biological_process
GO:0019752 carboxylic acid metabolic process biological_process
GO:0016052 carbohydrate catabolic process biological_process
GO:0016053 organic acid biosynthetic process biological_process

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016615 True 1490 mRNA 0.67 10 26151611 26155450

Neighbor

gene id symbol gene type direction distance location
AMCG00016614 NA coding downstream 34161 26104916 ~ 26117450 (-)
AMCG00016601 neurod2,LOC102791336,LOC102193051,LOC101464503 coding downstream 325765 25824746 ~ 25825846 (-)
AMCG00016599 med1 coding downstream 425064 25706081 ~ 25726547 (-)
AMCG00016600 fbxl20,LOC107727724,LOC107666314,LOC107665129,LOC107549884,LOC107563017 coding downstream 448284 25676569 ~ 25703327 (-)
AMCG00016597 NA coding downstream 509278 25611563 ~ 25642333 (-)
AMCG00016624 LOC107733370 coding upstream 56936 26212386 ~ 26215060 (-)
AMCG00016629 LOC108438403 coding upstream 149465 26304915 ~ 26309363 (-)
AMCG00016628 NA coding upstream 184043 26339493 ~ 26343614 (-)
AMCG00016627 NA coding upstream 217569 26373019 ~ 26374602 (-)
AMCG00016630 eif1b,LOC105888686,LOC107549864,LOC103043673 coding upstream 224598 26380048 ~ 26381729 (-)
G14650 NA non-coding downstream 52639 26097728 ~ 26098972 (-)
G14585 NA non-coding downstream 129348 25971786 ~ 26022263 (-)
G14587 NA non-coding downstream 172048 25973534 ~ 25979563 (-)
G14578 NA non-coding downstream 230063 25918030 ~ 25921548 (-)
G14517 NA non-coding downstream 476411 25672304 ~ 25675200 (-)
G14723 NA non-coding upstream 119727 26275177 ~ 26303459 (-)
G14765 NA non-coding upstream 239482 26394932 ~ 26395425 (-)
G14775 NA non-coding upstream 269582 26425032 ~ 26425250 (-)
G14818 NA non-coding upstream 275005 26430455 ~ 26468099 (-)
G14832 NA non-coding upstream 367354 26522804 ~ 26523047 (-)
AMCG00016617 NA other downstream 2068 26147510 ~ 26149543 (-)
G14637 NA other downstream 68444 26081503 ~ 26083167 (-)
G14534 NA other downstream 397139 25752995 ~ 25754472 (-)
AMCG00016591 NA other downstream 731240 25413316 ~ 25420371 (-)
AMCG00016579 NA other downstream 874133 25264772 ~ 25277478 (-)
AMCG00016616 sp6,LOC102212756,LOC101463567,LOC100707362,LOC107396441,LOC106564946,LOC103384358 other upstream 1071 26156521 ~ 26159922 (-)
G14676 NA other upstream 26294 26181744 ~ 26184778 (-)
AMCG00016623 NA other upstream 83632 26239082 ~ 26241390 (-)
G14816 LOC108438405,LOC108438407,LOC107666325,LOC107563033,LOC107666324,LOC107753907 other upstream 271889 26427339 ~ 26520397 (-)
G14843 NA other upstream 413219 26568669 ~ 26571641 (-)

Expression


Co-expression Network