AMCG00016616 (sp6,LOC102212756,LOC101463567,LOC100707362,LOC107396441,LOC106564946,LOC103384358)


Basic Information

Item Value
gene id AMCG00016616
gene name sp6,LOC102212756,LOC101463567,LOC100707362,LOC107396441,LOC106564946,LOC103384358
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26156521 ~ 26159922 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016616
ATGGCGCACCCCTATGAGCCCTGGTTCCGCCCAGCGCCCCCTGGTGGCACTGGTGAGGACATGGGCGTACCGTCGTGGTGGGAGCTGCACGCTGGCACCAGCAGCTGGATGGAGCTGccagggggggcaggggggctgCAGGGTGCTGGGCAGGGAGGGGGCATGAGCCTGCAGTCTCTGGGCCCCTACAGCTCTGACCCCCAGCTGTGCGCACCCCCTCCCTCGCACATGGCCCCCAGCTCACCGCAGCTCTTCTCGCAGGACAGCTACAAGCAGCTGGAGGCAGGGGTGGGGGTtggagtgggagtgggggggcaggagcagcagcacCCCCTAGAAGAACCCCTGGAGAGTAGCGGGCGTCCCAAAACCCAGCGCCGGTCTGCCCCCCGCGGCTCTGGCCAGGCTGTCTGCCGCTGCCCCAACTGCCTGGACGCCGAGCGCATGGGGCCCTGCGgcgggggggctggggggggagATGGGGGAAAGAAGAAGCACCTGCACAACTGCCACATCCCGGGCTGTGGCAAGGCCTACGCCAAGACCTCGCACCTGAAGGCTCACCTGCGCTGGCACAGTGGCGACCGGCCCTTTGTATGCAACTGGCTGTTCTGTGGGAAGCGCTTCACACGCTCCGATGAGCTGCAGCGCCACCTGCAGACGCACACAGGCACCAAGAAGTTCACCTGCAGCGTGTGCCACCGCGTGTTCATGCGCAGCGACCACCTTGCCAAGCACACACGCACCCATGAGCCCCCCCGCGGCGCCGACGATGACAACGAGACTGCGgccccaccccccccctccagcACAGCTGCTGTCGCCCCCGGGCCCCTTGATGCCCCTCTCAAGCCCAAGCGGGAGCCGGACACCAGTGGCCCTGGCCAGGCTAACTGA
>TU18222
GGGGGAAAGAAGAAGCACCTGCACAACTGCCACATCCCGGGCTGTGGCAAGGCCTACGCCAAGACCTCGCACCTGAAGGCTCACCTGCGCTGGCACAGTGGCGACCGGCCCTTTGTATGCAACTGGCTGTTCTGTGGGAAGCGCTTCACACGCTCCGATGAGCTGCAGCGCCACCTGCAGACGCACACAGGCACCAAGAAGTTCACCTGCAGCGTGTGCCACCGCGTGTTCATGCGCAGCGACCACCTTGCCAAGCACACACGCACCCATGAGCCCCCCCGCGGCGCCGACGATGACAACGAGACTGCGgccccaccccccccctccagcACAGCTGCTGTCGCCCCCGGGCCCCTTGATGCCCCTCTCAAGCCCAAGCGGGAGCCGGACACCAGTGGCCCTGGCCAGGCTAACTGAGACTCCAACCTACACTCCTGACCGGGCAGCAGTGGGCCCAGCTGTGCTCTGGGGGCAGTGCTGGGCAGAGAGCAGCCGACGGATTGCCTCGTCTGACACTGACCTGCAGGGGGCACTGTAGAGTAGAGCCTCATCCAACACTGACCTGTAGGGGGCGCTGTAGAGTAGAGCCAGGCCTGAGCGCTCAGAGGCCAGTGGGGGGACACTGGAACACTCACAGGCCGGAGGGAAGCTGTCACCCTGTAGTTTGTGTTCGGTTTGTTTCATGAGGCacttaattaattttagtttgCGTTTTCAAGGAGTCGTTGTTGTATTTAAGATGCATCACTGGAGTCCTGCTGGGAAGCCTCTACCACACTGGGACATAGTCCTGCTCTGACGGGACACTGAGAGCCCAGACACAGTGGGCCGACCCGCTCCTGCCAACGCACCCACACCACTGTGCGTCTCCACACCCACATGCAGATgtcacgaacacacacacacacacacacacaaacacccacccACCACTATAGTGCTGCTTTGCCATGGGAACCAGCACATACCCCACCTGCGAGAGAGGGTTCCTGTCCTCCTCTCATTCCGATGCAGTGGCAGTGCTAATAACGCTCACTTATGACAGGAATGTGATGAGTAACGAGCCTGTGGGGTAGAGCTGGAGGACTGTGGTGTGATGGAGGAAAGGAGGATTGatgagaagggaaaaaaacaaaacacaagatgaACAAAACAAGATGCTGAGTGTTAAATGGAGAGAATGACGTATTTAAACCTTCCTGTAAATAGTTGGTGTAGTTCTGGTGTGGTTGATTCTACTGTATGCTTTAGTCTGAATTCCaaggagagtgtgtgtgaatgtgtgattttgtgtgtttgtgtagcggAGAGGTGATTATGTGCACAATTTCTAGCCACCACAGTGAGACTCGGTGTGCGCAGTCTGCTTCCCTTCCTGTCTCGTCTCCATtacattggtttgtttttttaattattgaatttcttaaaattagaataatacaaagtttaaagagtaataatattattaataattaaataaatgtagaattcCAAGTagggtatttttttattatttgtgtgtaattgtggttttgtttaaacACTGTGAAAcgcacagagaaaaaaaaaaaaagttttgaagtCTGCGATTAAAGATGTTTGTAGTCCCAGTtccttgtgtgttgtgttttgtgagtTGTGTGAGTTGGAGCAGAGCTGTAGAGAAGCCCTGCCCCCACTGCCCATCAGTGTCCTGGCCAGGCAGAGGCCGACTGGGTCAGGCCCTGCCATACAGTGCCACGCAGCAGGGGCAGTCAGTGGTCACTCGTTCAGGATGATCTCCTGCAGACTAAACAGCAGAATTAGTGACTCCCCCACGAAACACAGCGACGGATTGTGGTGCAACCAGTTAATCGTTGACTGCAGGCGTGGGTTTGAACTTGGAGCCAAG

Function

symbol description
sp6 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Orthologous to human SP6 (Sp6 transcription factor).

NR:

description
PREDICTED: transcription factor Sp6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016616 False 897 mRNA 0.69 1 26159026 26159922
TU18222 True 1891 TUCP 0.45 2 26156521 26159442

Neighbor

gene id symbol gene type direction distance location
AMCG00016615 NA coding downstream 1071 26151611 ~ 26155450 (-)
AMCG00016614 NA coding downstream 39071 26104916 ~ 26117450 (-)
AMCG00016601 neurod2,LOC102791336,LOC102193051,LOC101464503 coding downstream 330675 25824746 ~ 25825846 (-)
AMCG00016599 med1 coding downstream 429974 25706081 ~ 25726547 (-)
AMCG00016600 fbxl20,LOC107727724,LOC107666314,LOC107665129,LOC107549884,LOC107563017 coding downstream 453194 25676569 ~ 25703327 (-)
AMCG00016624 LOC107733370 coding upstream 52464 26212386 ~ 26215060 (-)
AMCG00016629 LOC108438403 coding upstream 144993 26304915 ~ 26309363 (-)
AMCG00016628 NA coding upstream 179571 26339493 ~ 26343614 (-)
AMCG00016627 NA coding upstream 213097 26373019 ~ 26374602 (-)
AMCG00016630 eif1b,LOC105888686,LOC107549864,LOC103043673 coding upstream 220126 26380048 ~ 26381729 (-)
G14650 NA non-coding downstream 57549 26097728 ~ 26098972 (-)
G14585 NA non-coding downstream 134258 25971786 ~ 26022263 (-)
G14587 NA non-coding downstream 176958 25973534 ~ 25979563 (-)
G14578 NA non-coding downstream 234973 25918030 ~ 25921548 (-)
G14517 NA non-coding downstream 481321 25672304 ~ 25675200 (-)
G14723 NA non-coding upstream 115255 26275177 ~ 26303459 (-)
G14765 NA non-coding upstream 235010 26394932 ~ 26395425 (-)
G14775 NA non-coding upstream 265110 26425032 ~ 26425250 (-)
G14818 NA non-coding upstream 270533 26430455 ~ 26468099 (-)
G14832 NA non-coding upstream 362882 26522804 ~ 26523047 (-)
AMCG00016617 NA other downstream 6978 26147510 ~ 26149543 (-)
G14637 NA other downstream 73354 26081503 ~ 26083167 (-)
G14534 NA other downstream 402049 25752995 ~ 25754472 (-)
AMCG00016591 NA other downstream 736150 25413316 ~ 25420371 (-)
AMCG00016579 NA other downstream 879043 25264772 ~ 25277478 (-)
G14676 NA other upstream 21822 26181744 ~ 26184778 (-)
AMCG00016623 NA other upstream 79160 26239082 ~ 26241390 (-)
G14816 LOC108438405,LOC108438407,LOC107666325,LOC107563033,LOC107666324,LOC107753907 other upstream 267417 26427339 ~ 26520397 (-)
G14843 NA other upstream 408747 26568669 ~ 26571641 (-)
AMCG00016643 NA other upstream 422604 26582526 ~ 26592300 (-)

Expression


Co-expression Network