AMCG00016617


Basic Information

Item Value
gene id AMCG00016617
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26147510 ~ 26149543 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016617
atgtgtgtgttgctggACACAGCGCAGAAGCTGCTGCAGCTGGAGACTGTGCGCCTGGACCGAGAGCACATCATTGCCATCGAGGGGCTACACTGCCTGGGCGCCGTGCACAGCCTGTACCTGCAGCAGAATAAAATTACGAAGATTGAAAACTTGGAACCCCTGTCCTGTTTAAGGTTCCTCACCCTTGCTGGGAACAGAATCTCCCGGATCGAGGGCCTGCAGGGTCTGAAGAAGCTGGGCTTTCTGGACCTGTCTGACAACCTTATTGAGCAGCTGGACCTGGATGGTCTGCCGCAGAGCCTGCTGCTGTTGAGCCTCCGAAGGAACCCCTGTGCGGAGCGGAAAGAGTACCGggCCAGTGTGGCTGCAGCTCTGCCACACCTGAGGGAGCTGGATGGACAGATGATCgcaggagagacagacagcaatGAGGACAGTGGGGGCTCAGAGggggaggaacaggaggaggaTGTCTACTACCATGACAAGCTCTGGTCACTGGATGGCATAAAGGTGCCCTGTGCTGTCGTGGCAGGGCTGTTCGGGGAGCTGCGGACGGAGTGGCGAGGACGGACAGAGCAGCGTGCGAGCAGGGCAGCAGTAGAGCAGCCAGAGAGGCTCCACGAGGCCCTGAACCTGTGGGGGTGGGCTGCAATGGGCAGAGACCCCGcaccccccctccacactgCTGTACCCCAGGGGGCTGGAGCAAAACCGAGTGCCAGGACTGTCAGCCAGGAGCAGGGCAGCGtcggggggggcagggggagagGACAGGCTCCAGCTGGCCACCAGCCTCCTCCCTCTGCCAGGAGAGGGGATCAGACTCAGGAGCTCCAGCAGTTTGGTCAAGAGCTCAGGCCCCCCCAGTGCCCTGGGGCCCAGGACCCCCCCCTCGAACACAGCCGCTGCACAGACGAACAGGAGCCCTGTGGTGGCGAGGGCAGCGGGCAGCGGCAGAACAAGGACATCTCCGAGTGCCGGGACAGTAGACACACAAGGGCTGCGGGGGGGCACTGGGGCAGTCAGGGGGCACAGCCTGAGGGGCAGAGCCGGGCAGCCTCGGAAATGACTGGGGCAATGGAGGGGTTTGGACAGGGGCTCCTCTATGGCCCCACACTGCCAGTGACCCAGACATCACAGTGGGAGTTTGAGCAACAGCTGACACTCTCAAaatccagacacacacacaggctgagGCCTGGAAGACACCACAGAGGATCCCATTCTGTAAACGTGTTCAGGGAAATGTTCCTTGTCATTAAACTGGACAGCCCCAATGCTGCAGCTTTGACTGGCTTTGTCTAA
>TU18219
agGTTCCTCACCCTTGCTGGGAACAGAATCTCCCGGATCGAGGGCCTGCAGGGTCTGAAGAAGCTGGGCTTTCTGGACCTGTCTGACAACCTTATTGAGCAGCTGGACCTGGATGGTCTGCCGCAGAGCCTGCTGCTGTTGAGCCTCCGAAGGAACCCCTGTGCGGAGCGGAAAGAGTACCGggCCAGTGTGGCTGCAGCTCTGCCACACCTGAGGGAGCTGGATGGACAGATGATCgcaggagagacagacagcaatGAGGACAGTGGGGGCTCAGAGggggaggaacaggaggaggaTGTCTACTACCATGACAAGCTCTGGTCACTGGATGGCATAAAGGGGCTGTTCGGGGAGCTGCGGACGGAGTGGCGAGGACGGACAGAGCAG

Function

GO:

id name namespace
GO:0003341 cilium movement biological_process
GO:0003143 embryonic heart tube morphogenesis biological_process
GO:0001539 cilium or flagellum-dependent cell motility biological_process
GO:0061371 determination of heart left/right asymmetry biological_process
GO:0044464 obsolete cell part cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016617 True 1311 mRNA 0.61 9 26147510 26149543
TU18219 False 390 lncRNA 0.60 4 26148305 26149084

Neighbor

gene id symbol gene type direction distance location
AMCG00016614 NA coding downstream 30060 26104916 ~ 26117450 (-)
AMCG00016601 neurod2,LOC102791336,LOC102193051,LOC101464503 coding downstream 321664 25824746 ~ 25825846 (-)
AMCG00016599 med1 coding downstream 420963 25706081 ~ 25726547 (-)
AMCG00016600 fbxl20,LOC107727724,LOC107666314,LOC107665129,LOC107549884,LOC107563017 coding downstream 444183 25676569 ~ 25703327 (-)
AMCG00016597 NA coding downstream 505177 25611563 ~ 25642333 (-)
AMCG00016615 NA coding upstream 2068 26151611 ~ 26155450 (-)
AMCG00016624 LOC107733370 coding upstream 62843 26212386 ~ 26215060 (-)
AMCG00016629 LOC108438403 coding upstream 155372 26304915 ~ 26309363 (-)
AMCG00016628 NA coding upstream 189950 26339493 ~ 26343614 (-)
AMCG00016627 NA coding upstream 223476 26373019 ~ 26374602 (-)
G14650 NA non-coding downstream 48538 26097728 ~ 26098972 (-)
G14585 NA non-coding downstream 125247 25971786 ~ 26022263 (-)
G14587 NA non-coding downstream 167947 25973534 ~ 25979563 (-)
G14578 NA non-coding downstream 225962 25918030 ~ 25921548 (-)
G14517 NA non-coding downstream 472310 25672304 ~ 25675200 (-)
G14723 NA non-coding upstream 125634 26275177 ~ 26303459 (-)
G14765 NA non-coding upstream 245389 26394932 ~ 26395425 (-)
G14775 NA non-coding upstream 275489 26425032 ~ 26425250 (-)
G14818 NA non-coding upstream 280912 26430455 ~ 26468099 (-)
G14832 NA non-coding upstream 373261 26522804 ~ 26523047 (-)
G14637 NA other downstream 64343 26081503 ~ 26083167 (-)
G14534 NA other downstream 393038 25752995 ~ 25754472 (-)
AMCG00016591 NA other downstream 727139 25413316 ~ 25420371 (-)
AMCG00016579 NA other downstream 870032 25264772 ~ 25277478 (-)
G14392 NA other downstream 1063811 25080568 ~ 25083699 (-)
AMCG00016616 sp6,LOC102212756,LOC101463567,LOC100707362,LOC107396441,LOC106564946,LOC103384358 other upstream 6978 26156521 ~ 26159922 (-)
G14676 NA other upstream 32201 26181744 ~ 26184778 (-)
AMCG00016623 NA other upstream 89539 26239082 ~ 26241390 (-)
G14816 LOC108438405,LOC108438407,LOC107666325,LOC107563033,LOC107666324,LOC107753907 other upstream 277796 26427339 ~ 26520397 (-)
G14843 NA other upstream 419126 26568669 ~ 26571641 (-)

Expression


Co-expression Network