AMCG00016621 (RPL23,rpl23,rl23)


Basic Information

Item Value
gene id AMCG00016621
gene name RPL23,rpl23,rl23
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26181399 ~ 26184860 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016621
GTTCGTCTCACTGCACTTTATAGTGGCTTTACTACAGTGCAATACCTTACACATTGCATTTTCttcattaacaataatattgtgATTTTGAGTTATCgtgcaacaaaacaatattctgtattttctctccttggcttattatatacaaaatactgtATGCATCTGATTCTATATCTCTTACTTAAATACGTGATGGCCTCGTCATGTGATTAGAGCGCTCCTTACAGTCTTCAAAGGGATTTGTGTGGCGAGGAAGTTCCGGTTCCTCCCCTATCACATGACCAGGGTTGGAGGCAAAACCGCGGAGCGTATATCCCAGCATCCTTTTAGGTCTCTTCCTCTTTCCGTGAACCGACATGTCTAAGAGAGGACGTGGTGGTTCGTCCGGTGCGAAGTTTCGCATCTCACTGGGTCTCCCAGTGGGGGCTGTGATCAACTGCGCTGACAACACAGgtgCAAAGAACCTGTACATCATCTCCGTGAAGGGCATCAAGGGCCGTCTGAACAGGCTGCCGGCGGCAGGTGTGGGGGACATGGTGATGGCCACTGTGAAGAAAGGCAAGCCAGAACTCCGGAAAAAGGTGCATCCTGCGGTAGTGATACGGCAGCGGAAATCCTACCGGAGGAAAGACGGGGTGTTCCTGTACTTCGAAGACAACGCAGGGGTTATAGTCAACAACAAAGGGGAGATGAAAGgctcgGCCATCACGGGTCCTGTGGCTAAGGAGTGTGCGGACCTCTGGCCCAGGATTGCCTCCAATGCGGGCAGCATTGcctgacccccccaccctgccctGTTTGTACAAACCCAATAAAACTGGTTCTGGCCAAAATGTCCTGCTGTCAGTTGCCTCCTTCCTTTGATTGGGAAAGCTGGGTCCAAACTCTCCACTACACCCACTCCCTCCTTCACTCAGTT

Function

symbol description
rpl23 Predicted to enable large ribosomal subunit rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Orthologous to human RPL23 (ribosomal protein L23).

NR:

description
60S ribosomal protein L23

GO:

id name namespace
GO:0006610 ribosomal protein import into nucleus biological_process
GO:0006614 SRP-dependent cotranslational protein targeting to membrane biological_process
GO:0006413 translational initiation biological_process
GO:0006414 translational elongation biological_process
GO:0006415 translational termination biological_process
GO:0019083 viral transcription biological_process
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0005730 nucleolus cellular_component
GO:0005515 protein binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02894 RP-L23e, RPL23; large subunit ribosomal protein L23e

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016621 True 919 mRNA 0.50 5 26181399 26184860

Neighbor

gene id symbol gene type direction distance location
AMCG00016610 NA coding upstream 34423 26137776 ~ 26146976 (+)
AMCG00016611 socs7 coding upstream 46624 26122437 ~ 26134775 (+)
AMCG00016613 NA coding upstream 78686 26099372 ~ 26102713 (+)
AMCG00016612 kpnb1 coding upstream 85391 26086899 ~ 26096008 (+)
AMCG00016608 npepps,LOC106587691 coding upstream 98135 26056769 ~ 26083264 (+)
AMCG00016618 LOC107707532,LOC107675249,LOC103375888 coding downstream 9561 26194421 ~ 26198373 (+)
AMCG00016622 pip4k2b coding downstream 14629 26199489 ~ 26212158 (+)
AMCG00016620 NA coding downstream 48254 26233114 ~ 26237577 (+)
AMCG00016619 NA coding downstream 76872 26261732 ~ 26264293 (+)
AMCG00016626 NA coding downstream 170745 26355605 ~ 26371140 (+)
G14623 NA non-coding upstream 15417 26165630 ~ 26165982 (+)
G14556 NA non-coding upstream 245818 25933951 ~ 25935581 (+)
G14510 NA non-coding upstream 503050 25672259 ~ 25678349 (+)
G14502 NA non-coding upstream 569710 25604639 ~ 25611689 (+)
G14455 NA non-coding upstream 758373 25422443 ~ 25423026 (+)
G14695 NA non-coding downstream 28434 26213294 ~ 26215317 (+)
G14703 NA non-coding downstream 49466 26234326 ~ 26304342 (+)
G14704 NA non-coding downstream 54310 26239170 ~ 26241244 (+)
G14755 NA non-coding downstream 195191 26380051 ~ 26382420 (+)
G14768 NA non-coding downstream 212789 26397649 ~ 26397927 (+)
AMCG00016607 NA other upstream 231223 25940528 ~ 25950176 (+)
AMCG00016598 NA other upstream 422473 25725253 ~ 25758926 (+)
AMCG00016584 NA other upstream 776559 25370296 ~ 25404840 (+)
AMCG00016566 NA other upstream 1023938 25150348 ~ 25157461 (+)
G14361 NA other upstream 1047520 25133198 ~ 25133879 (+)
AMCG00016625 mllt10,LOC106942732 other downstream 100942 26285802 ~ 26302514 (+)
AMCG00016633 NA other downstream 242479 26427339 ~ 26433656 (+)
AMCG00016640 NA other downstream 305078 26489938 ~ 26499242 (+)
AMCG00016638 krt222 other downstream 342459 26527319 ~ 26548212 (+)
AMCG00016635 NA other downstream 415233 26600093 ~ 26657425 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location