AMCG00016624 (LOC107733370)


Basic Information

Item Value
gene id AMCG00016624
gene name LOC107733370
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26212386 ~ 26215060 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016624
ATTCTCTAACGTTGCTACGCCTGAATAAAATAACTtctggaataaataaaacacgtTTTCTTCCCCCTGAAGGCCCAGGCCAACCTACAAAACTAGTCAAAATGTCGATCATGTCATATAACGGGGGAGCGGTGATGGCGATGCGTGGAAAAGGCTGTGTGGCCATCGCGGCGGACCGGCGGTTCGGGGTGCAGGCGCAGATGGTCACCACTGACTTTCAGAAGGTCTTCCCCATGGGTGATCGGCTCTACATCGGCCTGGCAGGGCTGGCCACCGACGTGCAGACAGTatttGGGCCATACTACATCGAGCCAGTGATCGCTGGCCTGGACCCCAAAACTCTGGAGCCATTCATCTGCTCTCTGGACCTGATCGGCTGCCCCATGGTGACAGAGGACTTTGTGGTGAGCGGCACGTGCTCGGAGCAGATGTACGGCATGTGTGAGTCGCTCTGGGAGCCCGACATGgaacCAGAGGACCTGTTTGAGACCATCTCGCAGGCCATGCTGAATGCAGTGGACAGAGACGCTGTGTCTGGGATGGGTGTCATAGTTCATGTCATtgaGAAGGACAAGATCACCACCAGGACACTGAAAGCCCGAATGGATTAAACCACCTCTCTTCACATTCACTTCATTCAGCTACAGCCCGCTctagattttataaataaaactgtttcactgtattgtttttcatgtgtggggggaggaggaggaggaggacgaggaggacgaggaggaaaAAGTCAATGAAATGGGTTTGACTGTGAAAGTGACTcagagtttttcttttctgggaGAATGGGAGACAGAGGCTCCCTGGTGCAGCTCGGAAGCCCTCGGGTTCTTCCTTTCTCCCACACACAGCCAGACGCTCACAAACATTCatactcacacagacacactcttaAACATACCTACCACACCGGGGTCAAATACCATTacatatctgtatttttaagtaCATCAAATACCGTTTAAATTTTGTTGTTCAAAGATTACAAATTGTATCTGGTTTGACAATAACTAATTGActatttgaaaatacttttttt

Function

NR:

description
PREDICTED: proteasome subunit beta type-3-like, partial

GO:

id name namespace
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0005839 proteasome core complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004298 threonine-type endopeptidase activity molecular_function

KEGG:

id description
K02735 PSMB3; 20S proteasome subunit beta 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016624 True 1054 mRNA 0.49 5 26212386 26215060

Neighbor

gene id symbol gene type direction distance location
AMCG00016615 NA coding downstream 56936 26151611 ~ 26155450 (-)
AMCG00016614 NA coding downstream 94936 26104916 ~ 26117450 (-)
AMCG00016601 neurod2,LOC102791336,LOC102193051,LOC101464503 coding downstream 386540 25824746 ~ 25825846 (-)
AMCG00016599 med1 coding downstream 485839 25706081 ~ 25726547 (-)
AMCG00016600 fbxl20,LOC107727724,LOC107666314,LOC107665129,LOC107549884,LOC107563017 coding downstream 509059 25676569 ~ 25703327 (-)
AMCG00016629 LOC108438403 coding upstream 89855 26304915 ~ 26309363 (-)
AMCG00016628 NA coding upstream 124433 26339493 ~ 26343614 (-)
AMCG00016627 NA coding upstream 157959 26373019 ~ 26374602 (-)
AMCG00016630 eif1b,LOC105888686,LOC107549864,LOC103043673 coding upstream 164988 26380048 ~ 26381729 (-)
AMCG00016634 NA coding upstream 227099 26442159 ~ 26446820 (-)
G14650 NA non-coding downstream 113414 26097728 ~ 26098972 (-)
G14585 NA non-coding downstream 190123 25971786 ~ 26022263 (-)
G14587 NA non-coding downstream 232823 25973534 ~ 25979563 (-)
G14578 NA non-coding downstream 290838 25918030 ~ 25921548 (-)
G14517 NA non-coding downstream 537186 25672304 ~ 25675200 (-)
G14723 NA non-coding upstream 60117 26275177 ~ 26303459 (-)
G14765 NA non-coding upstream 179872 26394932 ~ 26395425 (-)
G14775 NA non-coding upstream 209972 26425032 ~ 26425250 (-)
G14818 NA non-coding upstream 215395 26430455 ~ 26468099 (-)
G14832 NA non-coding upstream 307744 26522804 ~ 26523047 (-)
G14676 NA other downstream 27608 26181744 ~ 26184778 (-)
AMCG00016616 sp6,LOC102212756,LOC101463567,LOC100707362,LOC107396441,LOC106564946,LOC103384358 other downstream 52464 26156521 ~ 26159922 (-)
AMCG00016617 NA other downstream 62843 26147510 ~ 26149543 (-)
G14637 NA other downstream 129219 26081503 ~ 26083167 (-)
G14534 NA other downstream 457914 25752995 ~ 25754472 (-)
AMCG00016623 NA other upstream 24022 26239082 ~ 26241390 (-)
G14816 LOC108438405,LOC108438407,LOC107666325,LOC107563033,LOC107666324,LOC107753907 other upstream 212279 26427339 ~ 26520397 (-)
G14843 NA other upstream 353609 26568669 ~ 26571641 (-)
AMCG00016643 NA other upstream 367466 26582526 ~ 26592300 (-)
AMCG00016644 NA other upstream 411647 26626707 ~ 26643493 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_032714 psmb3 coding NC_007117.7 CM002890.2 16478099 ~ 16493516 (-)