XLOC_006153 (si:ch211-67f24.7)


Basic Information

Item Value
gene id XLOC_006153
gene name si:ch211-67f24.7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 36633355 ~ 36638969 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012113
CAGGCTCTGTTACGCAGCTCTGGAGCCGGCCATGCAGACTGGTGTTCACTACAGGAGAGCGAGCGGGTGCTGTGGCATCTTTGCAATAGCTGTCACATGACCTTGGAGGAGGCGGGGCCAAGTACAGAGGAGGCGGGGTCCAGCTCTGAGGGGACGGGACCTGAGCAGGGTTTGAGAAGCAGGTGTTGTGTCGAGAGCCCCGACTGTGGCCCTTCCGCCTTCACCAAGTACTGTGCCAACACTAATGCGGATACGGCCAGTGTCTCAGCGGGCGCAGGCATGGACAGCACTGGACACCAGAGGAAATGCTGTCGTGTTGGCATCTCACAGACTCTACCTCGGCCCAGTGGCATTTTGAGAAATGGCCGTGAGCAGCACGTGTGTGAGCTTCCCCCTGCTGGCTGGAGATCAGAGTACATCTGGAACGGCAGCGCAGGCCAGAGTCACTCAGGCCCCATCTGCATCCCCTTCGCTCGTCATCCCAGAGAGAGCGCACACTTTCTCAATCCCGGCCCTCCAGCTGGCATCGGGGGAAACCTTACCACTACGGCCAAAAACCAGAGCTCCTCTGCCGGTTTGGCTGTACGTGTGTGTGGCTCTCCAGGGCTTGATGGACGCGTTTACACCTCTGACCTGTATCCTCCAGCCCACCGGCTCGAGGATGGAGACACAGACTGTGACGTGGCCGATGCGTCCGTGTTTGACTTCTCCTCAGTGACGACCTGCAGTCCTGATGAAACTCTCAGTCGGCTCAGGGGAGCAGTAGCACACGAGGACGaggaggatgatgaagaggaCAGCCAGGTCCCAGTTCTCCTTAAACCGTCTTACACTCATAACAATTCAGCTGTGCAGGCCAGCGGAGGATTATGGATGCCGTGGCAGATTCCCAGACGGGCTCCCATTCCTGCGGAGGTTCGCATTGGGGTGCAGGGGAAGACACGTGGACCAAAACCACACCGCATCCCCGCCACTGCTTTCCGGCCAATTTGGGACCCAAATTACTCTCAGagTGATGCAACTCCTGCGAAAGAGACCTCTGTGTCCTTCAGCTCAACCAATCAGATCATTAATCAGCCGCAAGAGAATGACCAATCACGATCTGGTTATAGAGGTACTGGAGTCCAGCGGGCTGAAGCAGTGTGGCACGACAGCGAGGACAGTGAAGGACCCTGCAGTACAGTCTGACACACTCCTAAACAGGAGACAATCAACATTCCAGACTTCTCTACTTCAGCCAATAAAACAGTTGGAGGTTATGAAACATTTCTTCACTTACCCCACCAGCACACCGAAACACCACAAAAGTCCTCAAGCAGGATTTGATTGGTCTGCGAGATGCTGATATAACAGGATGCACGTAAAGTCAGAAGAATAAAAACGTTCAGTAGAAAATAA

Function

symbol description
si:ch211-67f24.7 Is expressed in female organism.

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-129 Is expressed in female organism.

Ensembl:

ensembl_id ENSDARG00000092721

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012113 True 1398 mRNA 0.55 5 36633355 36638969

Neighbor

gene id symbol gene type direction distance location
XLOC_006152 si:ch211-67f24.7 coding upstream 7263 36613359 ~ 36626092 (+)
XLOC_006151 gmfb coding upstream 26414 36585399 ~ 36606941 (+)
XLOC_006150 TTC9 coding upstream 479783 36144341 ~ 36153572 (+)
XLOC_006149 NA coding upstream 638188 35989155 ~ 35995167 (+)
XLOC_006148 si:ch211-67f13.7 coding upstream 671920 35955562 ~ 35961435 (+)
XLOC_006154 dmac2l coding downstream 41595 36680564 ~ 36691709 (+)
XLOC_006155 atl1 coding downstream 125746 36764715 ~ 36784400 (+)
XLOC_006156 tmx1 coding downstream 284083 36923052 ~ 36934915 (+)
XLOC_006157 frmd6 coding downstream 319117 36958086 ~ 36997761 (+)
XLOC_006158 esr2b coding downstream 383632 37022601 ~ 37072558 (+)
XLOC_006140 CU681845.1 non-coding upstream 1111179 35483618 ~ 35522176 (+)
XLOC_006135 NA non-coding upstream 1648442 34752174 ~ 34984913 (+)
XLOC_006160 NA non-coding downstream 899684 37538653 ~ 37544321 (+)
XLOC_006162 BX005106.1 non-coding downstream 1035209 37674178 ~ 37674294 (+)
XLOC_006163 BX322660.1 non-coding downstream 1511548 38150517 ~ 38150637 (+)
XLOC_006165 NA non-coding downstream 1587107 38226076 ~ 38284199 (+)
XLOC_006175 NA non-coding downstream 3045502 39684471 ~ 39727464 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_05112839_05116264 NA coding CI01000012 null 5111405 ~ 5116264 (-)