AMCG00016627


Basic Information

Item Value
gene id AMCG00016627
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26373019 ~ 26374602 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016627
GCGGGGGCAGGTGTATATAAGAAGCGGAGCGATGCGCTGCAACTCACAAGTTTTACCTTTAGCATCACCGAGACCGCTGCGCAACAGCGAACTGAGGAGTCTGCACTGCTACAGACATGACTGGCAGGAAGGTGTACATGTGCGCCCTGGTGACGGCACTGGCGGGGGTGTGCCTGGCGCTGCCATTGTCCAGCTCGGGGGGTGTGGTGCTGGCACACAGGGGCGCAAACGGGGGCACAGCCTGGGCACAGATGCTGGGCAGGCCGACGGAGGGCGGTGGCTGGGGGCAGGGAGCCCTGGGGGGCCGGGTGGCGAGGCAGGACCGGCTGGGCTCCCTGACTGAGGAGCAACGAGAGTTCATGTCTAAGTACATCCTGCAGACACTCACAGAGATGCTGAACAGGGAGGGCTGTCACGAGGAGAACCCCATCTCCATTTCTGACCGAGACTACCAGGGCTGGATGGACTTTGGCCGGCGCAGCACAGAGGAGCTGGGGCTGGACTCCTGAGCATGCGCCCCCTGCTGGGTGTTGGGCTGACCTGCACCCTGACACTGCCCTTGCTGTGATTCTGCTGCCAATTCACCTCCACCATTTACTGTACAGATCCCACAGATACAGTagatagtatttattttaaataaacaaacgccTTCTGTAATAATCTGTTCCCCtagtctgtattttattttttctgtgcacTCCTGTCAGTGTACTGTAAAGGTGGGGGGAGGCTGTGGTCTGTGACTACACAATGAAGCTAAACCACCTCCTGTTAGTTCAGTATCCTATCAGTTGTCCTCTTCCTTGGGTTCTGTTactaactaacaaacaaaaaaaacacccagaatTCAGACTCGAAGACAAGGAGACTAGGAGCCATTTATTGTTGGGAagc

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0017001 antibiotic catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016627 True 897 mRNA 0.55 3 26373019 26374602

Neighbor

gene id symbol gene type direction distance location
AMCG00016628 NA coding downstream 29405 26339493 ~ 26343614 (-)
AMCG00016629 LOC108438403 coding downstream 63656 26304915 ~ 26309363 (-)
AMCG00016624 LOC107733370 coding downstream 157959 26212386 ~ 26215060 (-)
AMCG00016615 NA coding downstream 217569 26151611 ~ 26155450 (-)
AMCG00016614 NA coding downstream 255569 26104916 ~ 26117450 (-)
AMCG00016630 eif1b,LOC105888686,LOC107549864,LOC103043673 coding upstream 5446 26380048 ~ 26381729 (-)
AMCG00016634 NA coding upstream 67557 26442159 ~ 26446820 (-)
AMCG00016645 NA coding upstream 280986 26655588 ~ 26660740 (-)
AMCG00016642 NA coding upstream 287484 26662086 ~ 26664301 (-)
AMCG00016649 NA coding upstream 347185 26721787 ~ 26732090 (-)
G14723 NA non-coding downstream 69560 26275177 ~ 26303459 (-)
G14650 NA non-coding downstream 274047 26097728 ~ 26098972 (-)
G14585 NA non-coding downstream 350756 25971786 ~ 26022263 (-)
G14587 NA non-coding downstream 393456 25973534 ~ 25979563 (-)
G14578 NA non-coding downstream 451471 25918030 ~ 25921548 (-)
G14765 NA non-coding upstream 20330 26394932 ~ 26395425 (-)
G14775 NA non-coding upstream 50430 26425032 ~ 26425250 (-)
G14818 NA non-coding upstream 55853 26430455 ~ 26468099 (-)
G14832 NA non-coding upstream 148202 26522804 ~ 26523047 (-)
G14882 NA non-coding upstream 366483 26741085 ~ 26742338 (-)
AMCG00016623 NA other downstream 131629 26239082 ~ 26241390 (-)
G14676 NA other downstream 188241 26181744 ~ 26184778 (-)
AMCG00016616 sp6,LOC102212756,LOC101463567,LOC100707362,LOC107396441,LOC106564946,LOC103384358 other downstream 213097 26156521 ~ 26159922 (-)
AMCG00016617 NA other downstream 223476 26147510 ~ 26149543 (-)
G14637 NA other downstream 289852 26081503 ~ 26083167 (-)
G14816 LOC108438405,LOC108438407,LOC107666325,LOC107563033,LOC107666324,LOC107753907 other upstream 52737 26427339 ~ 26520397 (-)
G14843 NA other upstream 194067 26568669 ~ 26571641 (-)
AMCG00016643 NA other upstream 207924 26582526 ~ 26592300 (-)
AMCG00016644 NA other upstream 252105 26626707 ~ 26643493 (-)
AMCG00016662 cbx1,cbx1b,LOC108279860 other upstream 620571 26995173 ~ 27003707 (-)

Expression


Co-expression Network