AMCG00016628


Basic Information

Item Value
gene id AMCG00016628
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26339493 ~ 26343614 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016628
cccagcccagcccagccccgcCGCACCCTGATCGGATTCACAGCTGATGGTCCATCGTCCAATGCACCGCAAGTCGGGTGGTGCTTTGAACTTCCCACCATTGTCTTCAGTGGGAGTATGACGTGTGGTAGGGGTTAGGGATCGTCTGAAcggaataatagtaatatagaCCTTGCAATAGAACAAGCCTCTGTATGTTGTCACACgcaatctaataataataataataataataaaagaagaaaaaggcaaTACTGATTCGGTCTGAACTGAAGGGGTGCGACTCCACCGGCCCGTTAATTGAGCCACACCTGCGCTCAATCAGCACGACAGTCGGCTCTGTGAGAGGGCGCACATTGTTCTTAAACCAAAAAGTGCATTTCTGTACCAAGGCCTTTAGACCCCTTCAAGATAGTAGTGTTAGGCTGTCGCTAACTGTGAGTATACTACCATCCATTTGTGAGAAAATCAGTGCCATGTCTGTAGATTGACAGGCTCATGTTACAAGACTATTTGATCAAACAGGTGGAAGACGGGGGTTTTGGGGGTTGAAACGCTCTCAGTGGTAAACAGGCGGGCTTAGCACTTTAGACTTGCGTCTAAtgagtatttaaatattaagacCTTAAGACAGACAAGCAAACCCCACTCCTGTGTCTCCCCTCGTCTGGTGAAGCAGAAGCAGCATTTCCTCAATGAAAGGCAAGAGACGCGTGGCGGACAGCGCCGCCGGAGTGTGGCACTACTCCCACGGGCATGTGCCAGGGCAGGTGCTGGCGGTGGGGCAGGGAGATGTGGGGCAGCTGGGACTGGGGGAGGAAGTGCTGGAGCGGACCAGGGCGGCGCTGGTCAGGCTGCCGGCTCCGGTGGTGCAGGTGGAGGCGGGGGGAATGCATACGGTGTGCCTGACTGAGAATGGGGAGGTGTACACGTTCGGCTGCAATGACGAGGGAGGGCTGGGGCGCGACACGACGGAGGAGGGCTCGGAGACCACACCCGGGCGCGTGGCGCTGCCCAAGCCCACGGTGCAGGTGTCGGCAGGGGACAGCCACACAGCCGCACTGGCCCGTGACGGCACCGTCTTCATCTGGGGCTCCTTCAGGGACAACAGCGGGGTGATTGGCCTGCTGGAAGCCTGGGAGAAGAGTAATGATCACCTGGTGCTGCTGACGCTGAGCGGCTCTCTGCTCACCTGTGGCTGCGGGGAGCAGGGCCAGCTTGGCCGCGTGCCAGAGAGATTCACCAACCGTGGCGGGAGAGGGGGCCTGGCCCGTCTGCTGGTCCCCCAGGCTGTGCGGATCAAGGGCAGCGGCAGATTGAAGTTTCAGGATGTGTTCTGTGGCGCCTACTTCACCTTCGCCCTGACCTCAGAGGGACGAGTCTACTGTTTTGGCCTCTCCAACTACCACCAGCTGGgcACGCAGAGTCCCGTGTCGGTGTTCATGCCTCAGGTGACGGCTGGGTTCCAGGGGTCAGCGGTGTCCTGGGTCTCCTTCTCCGGGGGCCAGCACCACTCGCTGTGTCTGGACTCCACAGGGCAGGTGTACAGCCTAGGCAGGGCAGAGTACGGGCGGTTGGGTCTGGGCGCGGGTGCCAGGGAGCAGGTGTGTCCGGCCGCAGTGCCCGAGCTGAGCAGGGCGACCGTTGTGGCCTGCGGAGCATCGGTCAGCTACGCCATCACTAGTGACGGTTGTGCCCTCTCCTGGGGCATGGGCACCAACATGCAGCTGGGCACAGGCGAGGAGGATGACGCCTGGAGCCCCGTGCAGATGAGGGGCAAGCAGCTGGATGGCCATGCAGTACTGGCAGTGTCCAGCGGGGGGCAGCACACAATGCTCCTGATAAAGGACCAGAGCTGACAGGGGAGTCAGCAGCAGTCTCCAGGgcctaactctctctctctctctctctcgcgcgcTCGCTCATCCTGTCTGTTTTATCTTTACTGTGCTTTGAAGCTTGCCTCTGCTGCTCAAGGCAATATTAAAGGCAATATTCCGTATTCTGTTTTTATAGGAATCTGTacttcaaagaaaataagtgcaGAATATCTtagcattttttattgtgtgtgtgtttatgtgtgtatgtttgctCATGCGTGTGTAATGTATGcccattttgtgaaaatgaataaaat

Function

GO: NA

KEGG:

id description
K11493 RCC1; regulator of chromosome condensation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016628 True 2140 mRNA 0.56 9 26339493 26343614

Neighbor

gene id symbol gene type direction distance location
AMCG00016629 LOC108438403 coding downstream 30130 26304915 ~ 26309363 (-)
AMCG00016624 LOC107733370 coding downstream 124433 26212386 ~ 26215060 (-)
AMCG00016615 NA coding downstream 184043 26151611 ~ 26155450 (-)
AMCG00016614 NA coding downstream 222043 26104916 ~ 26117450 (-)
AMCG00016601 neurod2,LOC102791336,LOC102193051,LOC101464503 coding downstream 513647 25824746 ~ 25825846 (-)
AMCG00016627 NA coding upstream 29405 26373019 ~ 26374602 (-)
AMCG00016630 eif1b,LOC105888686,LOC107549864,LOC103043673 coding upstream 36434 26380048 ~ 26381729 (-)
AMCG00016634 NA coding upstream 98545 26442159 ~ 26446820 (-)
AMCG00016645 NA coding upstream 311974 26655588 ~ 26660740 (-)
AMCG00016642 NA coding upstream 318472 26662086 ~ 26664301 (-)
G14723 NA non-coding downstream 36034 26275177 ~ 26303459 (-)
G14650 NA non-coding downstream 240521 26097728 ~ 26098972 (-)
G14585 NA non-coding downstream 317230 25971786 ~ 26022263 (-)
G14587 NA non-coding downstream 359930 25973534 ~ 25979563 (-)
G14578 NA non-coding downstream 417945 25918030 ~ 25921548 (-)
G14765 NA non-coding upstream 51318 26394932 ~ 26395425 (-)
G14775 NA non-coding upstream 81418 26425032 ~ 26425250 (-)
G14818 NA non-coding upstream 86841 26430455 ~ 26468099 (-)
G14832 NA non-coding upstream 179190 26522804 ~ 26523047 (-)
G14882 NA non-coding upstream 397471 26741085 ~ 26742338 (-)
AMCG00016623 NA other downstream 98103 26239082 ~ 26241390 (-)
G14676 NA other downstream 154715 26181744 ~ 26184778 (-)
AMCG00016616 sp6,LOC102212756,LOC101463567,LOC100707362,LOC107396441,LOC106564946,LOC103384358 other downstream 179571 26156521 ~ 26159922 (-)
AMCG00016617 NA other downstream 189950 26147510 ~ 26149543 (-)
G14637 NA other downstream 256326 26081503 ~ 26083167 (-)
G14816 LOC108438405,LOC108438407,LOC107666325,LOC107563033,LOC107666324,LOC107753907 other upstream 83725 26427339 ~ 26520397 (-)
G14843 NA other upstream 225055 26568669 ~ 26571641 (-)
AMCG00016643 NA other upstream 238912 26582526 ~ 26592300 (-)
AMCG00016644 NA other upstream 283093 26626707 ~ 26643493 (-)
AMCG00016662 cbx1,cbx1b,LOC108279860 other upstream 651559 26995173 ~ 27003707 (-)

Expression


Co-expression Network