AMCG00016629 (LOC108438403)


Basic Information

Item Value
gene id AMCG00016629
gene name LOC108438403
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26304915 ~ 26309363 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016629
ATGGCCATGCATAtGACTGAGTCGAATGACGGCATGACGAAGGTGACGGAGTGGCAGCAGCAGTCCTACTTCACGGACTCCGGTATCCAGTCGGGCGCCACCACGGCTGCCCACTCCATGCGCGGTCTTCCTGACGATGGCAGCGAGTACAACAAGAAATACACAGTCACCACAACGACGTACACCACTGAGAGCCCCGCAGATGTGGAGTCACAGTACGCCATGACGCGTGCCCAACGCGTGCGGATGGCCATGTACCCGGAGACTGTGGTGGAGGGCTCCACTATTCTGTCCACGCAGACCGACCTGAGCCAGCAGACCAACGTGGTGGTGAACAAAGCGGCCATGATCGTGAACCAGCTGACCCGTAAGGATGCGTCGCGGCGCGTGTTGATGCAGTCACCTCAGATGGTGGCGGCGGTGGAGGGTGCCAAGATGGCAGTGCGGCTGGCCGACGGGCTGCAGAGGATGGTGCCACTGCTGAAGAAGAGCAACCCCAAGTTCCTGGCCATCACCACCGACTGCCTGCAGCTGCTGTCCTATGGCAACCAGGAGAGCAAGTTGATTATCCTGGCTAACGGGGGTCCGGAGGGGCTGGTGCAGATAATGCGCAACTACAACTACGAGAAGCTGCTGTGGACCACGAGCCGCGTGCTGAAGGTGCTGTCCGTGTGCCCCAGCAACAAGCCTGCCATCGTGGAGGCCGgcGGTATGCAGGCCCTGGGGAAGCACCTAACCGGCTCCAGTCCTCGCCTGATGCAGAACTGCCTGTGGACCCTGAGGAACCTCTCGGACGCTGCCACCAAGCAGGACGGTCTGGACGGGCTGCTGCAAATCCTGGTGGCCCAGCTGAGCTCCGACGATGTGAACATGCTGACCTGCGCCACGGGCATCCTGTCCAACCTGACCTGCAACAACAGCCGCAACAAGACACTGGTCACCCAGAGCAATGGCGTGGAGTCGCTGATCCAGGCCATCCTGCGCGCGGGCGAGAAGGAGGACATCACCGAACCGGCCGTGTGCGCCCTGCGCCACCTGACCAGCCGCCACGCGGACGCAGAGGTGGCACAGAATGCCGTGCGGCTGCACTACGGCATCCCCGCCATCGTCAACCTGCTCAATCAGCCCTACTACTGGCCTGTCATTAAGGCCACTGTGGGTCTGATCCGGAACCTGGCTCTGTGTCCAGTGAACCAGGCCCCCCTGCGCGATGCCGGCGCAGTCCCCCGCCTCATCAACCTGCTGGTCACTGCACACCAGGACGCCCAGCGCCACGCCACCTCCAGCACCCAGCAGACGTACCAGGATGGAGTGAGGATGGAGGAGATAGTGGAGGGGTGCACAGGCGCTCTGCACATCCTGGCGCGGGACCCTGTGAACCGCTCAGAGATCGCCAACCTGCACACCATCCCCCTCTTCGTACAGCTGCTGTACTCTCCCATCGAGAACGTGAAGCGCGTGGCGGCGGGCGCTCTGTGTGAGCTGGCTCTGGACAAGCAGTCGGCCGAGGAGATCGATGCCGAGGGGGCGTCCGCGCCGCTCATGGAGCTGCTGCACTCCAGCAACGAGGGCATCGCCACCTATGCCGCCGCTGTGCTGTTCCGGATCTCCGAGGACAAGAACTCCGACTACAGGAAGCGCGTGTCCGTGGAGCTGACCCACTCGCTGTTCAAACACGACCCTGCCGCCTGGGAGATGgccCACAAAACTGTGCAGATGGATCCTAGCTATGGTGTAGATGAAATGGACCCTGGGTACCACATGTACGGCTACGGGCAGGAGTCTATGCCCATGGAGCACGTGCCGATGGACGATATGGGCCCTGAGTATGGAGAGGACGTCCCCATGGACCACATGCTCAGGCAGGGCTACCAGGACCAGTACTAG

Function

NR:

description
PREDICTED: junction plakoglobin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016629 True 1887 mRNA 0.62 14 26304915 26309363

Neighbor

gene id symbol gene type direction distance location
AMCG00016624 LOC107733370 coding downstream 89855 26212386 ~ 26215060 (-)
AMCG00016615 NA coding downstream 149465 26151611 ~ 26155450 (-)
AMCG00016614 NA coding downstream 187465 26104916 ~ 26117450 (-)
AMCG00016601 neurod2,LOC102791336,LOC102193051,LOC101464503 coding downstream 479069 25824746 ~ 25825846 (-)
AMCG00016599 med1 coding downstream 578368 25706081 ~ 25726547 (-)
AMCG00016628 NA coding upstream 30130 26339493 ~ 26343614 (-)
AMCG00016627 NA coding upstream 63656 26373019 ~ 26374602 (-)
AMCG00016630 eif1b,LOC105888686,LOC107549864,LOC103043673 coding upstream 70685 26380048 ~ 26381729 (-)
AMCG00016634 NA coding upstream 132796 26442159 ~ 26446820 (-)
AMCG00016645 NA coding upstream 346225 26655588 ~ 26660740 (-)
G14723 NA non-coding downstream 1456 26275177 ~ 26303459 (-)
G14650 NA non-coding downstream 205943 26097728 ~ 26098972 (-)
G14585 NA non-coding downstream 282652 25971786 ~ 26022263 (-)
G14587 NA non-coding downstream 325352 25973534 ~ 25979563 (-)
G14578 NA non-coding downstream 383367 25918030 ~ 25921548 (-)
G14765 NA non-coding upstream 85569 26394932 ~ 26395425 (-)
G14775 NA non-coding upstream 115669 26425032 ~ 26425250 (-)
G14818 NA non-coding upstream 121092 26430455 ~ 26468099 (-)
G14832 NA non-coding upstream 213441 26522804 ~ 26523047 (-)
G14882 NA non-coding upstream 431722 26741085 ~ 26742338 (-)
AMCG00016623 NA other downstream 63525 26239082 ~ 26241390 (-)
G14676 NA other downstream 120137 26181744 ~ 26184778 (-)
AMCG00016616 sp6,LOC102212756,LOC101463567,LOC100707362,LOC107396441,LOC106564946,LOC103384358 other downstream 144993 26156521 ~ 26159922 (-)
AMCG00016617 NA other downstream 155372 26147510 ~ 26149543 (-)
G14637 NA other downstream 221748 26081503 ~ 26083167 (-)
G14816 LOC108438405,LOC108438407,LOC107666325,LOC107563033,LOC107666324,LOC107753907 other upstream 117976 26427339 ~ 26520397 (-)
G14843 NA other upstream 259306 26568669 ~ 26571641 (-)
AMCG00016643 NA other upstream 273163 26582526 ~ 26592300 (-)
AMCG00016644 NA other upstream 317344 26626707 ~ 26643493 (-)
AMCG00016662 cbx1,cbx1b,LOC108279860 other upstream 685810 26995173 ~ 27003707 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location