AMCG00016630 (eif1b,LOC105888686,LOC107549864,LOC103043673)


Basic Information

Item Value
gene id AMCG00016630
gene name eif1b,LOC105888686,LOC107549864,LOC103043673
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26380048 ~ 26381729 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016630
ATGGTGGCCAGGAGCACTCGCATTCCTGCCCCGACGAACGGCGAGAGCGGAGCAACCTGGCCAGCCAATGGCAGCGGGAATGGGGCGGGGCGTGGGGATGACCAGCCAATGGTAGCGGGAATGGGGCGGGGCGTGGGGATGACCAGCCAATGGGCCGCCGCAAGGGCGCTTTGCGGCTACCCCTTTGCTGATGCAACTAAGGGTGATGACCGGCTCCCGGCTGGGACAGAAGACTACATCCACATAAGAATCCAGCAGCGGAACGGCAGGAAGACTCTGACCACAGTCCAGGGCATTGCAGATGATTATGACAAGAAGAAACTAGTCAAAGCCTTCAAGAAGAAATTTGCCTGCAATGGGACGGTGATTGAGCACCCAGAGTATGGTGAAGTGATTCAGCTGCAGGGAGACCAGCGCAAGAATATCTGCCAGTTCCTTACTGAGATCGGCTTGGCCAAGGAGGAACAGCTGAAGGTCCATGGGTTCTAGGTGATGTGGGGAGCCCTGACCGTGCCGCTTGACGTTTGCAGCCCTTGCAGTCCTTGGATAATGACGGCCTCCAAATTAAGACTCTTAACTCTTTCCTCCCCTTGGAAGAGGGGGCCATCCAGTGCATTTAAGGACAGATAGCTCAATGTGACCAGGAATCGACTATAATGCAAGAGGAACCGCCGATTTTTAGTtttaacctttttcttttcGTGACCTTTAAGTGTGCTTCTTTTCAAGCACGAttccatgtttcttttttttttgtacaatgtttcaaaataaaatgagcagATGTCATTTTTCTGAA

Function

symbol description
eif1b Predicted to enable ribosomal small subunit binding activity and translation initiation factor activity. Predicted to act upstream of or within translational initiation. Predicted to be part of eukaryotic 43S preinitiation complex. Orthologous to several human genes including EIF1B (eukaryotic translation initiation factor 1B).

NR:

description
PREDICTED: eukaryotic translation initiation factor 1

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03113 EIF1, SUI1; translation initiation factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016630 True 799 mRNA 0.52 4 26380048 26381729

Neighbor

gene id symbol gene type direction distance location
AMCG00016627 NA coding downstream 5446 26373019 ~ 26374602 (-)
AMCG00016628 NA coding downstream 36434 26339493 ~ 26343614 (-)
AMCG00016629 LOC108438403 coding downstream 70685 26304915 ~ 26309363 (-)
AMCG00016624 LOC107733370 coding downstream 164988 26212386 ~ 26215060 (-)
AMCG00016615 NA coding downstream 224598 26151611 ~ 26155450 (-)
AMCG00016634 NA coding upstream 60430 26442159 ~ 26446820 (-)
AMCG00016645 NA coding upstream 273859 26655588 ~ 26660740 (-)
AMCG00016642 NA coding upstream 280357 26662086 ~ 26664301 (-)
AMCG00016649 NA coding upstream 340058 26721787 ~ 26732090 (-)
AMCG00016648 NA coding upstream 361855 26743584 ~ 26749062 (-)
G14723 NA non-coding downstream 76589 26275177 ~ 26303459 (-)
G14650 NA non-coding downstream 281076 26097728 ~ 26098972 (-)
G14585 NA non-coding downstream 357785 25971786 ~ 26022263 (-)
G14587 NA non-coding downstream 400485 25973534 ~ 25979563 (-)
G14578 NA non-coding downstream 458500 25918030 ~ 25921548 (-)
G14765 NA non-coding upstream 13203 26394932 ~ 26395425 (-)
G14775 NA non-coding upstream 43303 26425032 ~ 26425250 (-)
G14818 NA non-coding upstream 48726 26430455 ~ 26468099 (-)
G14832 NA non-coding upstream 141075 26522804 ~ 26523047 (-)
G14882 NA non-coding upstream 359356 26741085 ~ 26742338 (-)
AMCG00016623 NA other downstream 138658 26239082 ~ 26241390 (-)
G14676 NA other downstream 195270 26181744 ~ 26184778 (-)
AMCG00016616 sp6,LOC102212756,LOC101463567,LOC100707362,LOC107396441,LOC106564946,LOC103384358 other downstream 220126 26156521 ~ 26159922 (-)
AMCG00016617 NA other downstream 230505 26147510 ~ 26149543 (-)
G14637 NA other downstream 296881 26081503 ~ 26083167 (-)
G14816 LOC108438405,LOC108438407,LOC107666325,LOC107563033,LOC107666324,LOC107753907 other upstream 45610 26427339 ~ 26520397 (-)
G14843 NA other upstream 186940 26568669 ~ 26571641 (-)
AMCG00016643 NA other upstream 200797 26582526 ~ 26592300 (-)
AMCG00016644 NA other upstream 244978 26626707 ~ 26643493 (-)
AMCG00016662 cbx1,cbx1b,LOC108279860 other upstream 613444 26995173 ~ 27003707 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G196619 eif1b,LOC103043673,LOC107549864,LOC107666344,LOC107665169 non-coding NC_035919.1 CM008322.1 10481407 ~ 10484765 (+)