AMCG00016635


Basic Information

Item Value
gene id AMCG00016635
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26600093 ~ 26657425 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016635
CTCGCAGAGGGAGTGGCCggctgtttgttatttaaagcaCCCATGTGGTCGACAGCAGCACTCAAACTTGAATCTCACAGAGGGAAGTAACGCTCCCTCCTCACTCACAGCCCACAGTCCACTCCCTGCTGACAGAAGCACGGAGAAGGAACCGCTGTCTGATAGtttcacgGAGGCTGTTTTTCAAATCGGACAAGACAAAGCCCTTTTCTCCAGActgacagagagatagagagccCTGTGGACTCCTCCTCCCCACCCTGAAGAGCGCATGAGATCCACCGCAGAAGAGATGTCTCAGGTCATCCCCAGACACGTGCTGAGGGTGGGACAGACCATATGCATGTCGTCCAAGGAGGAGGTGCTGCCTCTGGGCCGGGCACTGTCCCCAGGGCCGTTCCAGGGCTGCCACTCCCTGTCGAAGACATCCTGCCAGTACCCCTCAGAGTCATGGGCCCGACACCCAGCCAGGATCGTGTCCCCATGTTCCGAGGGCTCCCCGGGGGGTTCGGACGCCACTGAGTGCAGCCCAGACTCCCCCACCCTGGACATTTCCCTCAACAACCTGAACCAGCTGATCCTGGAGCTCGACCCCTCCTTCGAGCCACTGCCCCTGCATGGAAAAACGCAGAGCCCCCACACCCCCCTGCCCTGGCAGTATGGCCACAGCCCAGCATGCTCCCCTGAAGAGGACGTGTCCCGGGCTGTGCTGGTGCCCAGGGGCTGCCCCTCCCAGTCCCAGGTGTCCCAGGTGTCCCAGAGCATCCCCATCCCCACACATCCCCGCATGGGCAGCAGCTGCTCCCCCAGTGGCAGCCTGGTGTTCTCCAGCTCCCCCACTGCCACCAGCGGCCTGCCCCCCCTGCCCCTCAGTCGATCCCGCCCCTCCGGTGGCCCCATGCTGCAGCACACTGACACCCCGCTCTCCGTCTCCCTGGGGACCCCAGCAGTTGGTCGGCACCGGGCCAGCGCTGCCTCGCTCCTGTCGACCTCCCCTGGCTCTGACACGAGCTACATGCTGGGCAGCACCCACTCCCTGCTCAGCGAGGACTCGGAGAGCAGCGAGCGGCGACTCTTCAGCCCGTCAGGCTGGTCCAGTCAGGCCAGCAGCCCATACCCCCAGTCCCCTGGGCCCCACAAGCCGTTCTTCTCAGACCACAGCCTGGACAGGTACGACAGCAGGGCACTTGCCCAGCAGCCCCCCAGCGGACTGTCATACAGGAAGggcccccaccaccaccaccacctctccCCTCCACGGCCCATCGGACAGCCCAGCAGCTGCCCCCCCTCGGTGGCCGGCTCCATGGCCGACATCCCCACGGTGCTGGTCAACGGCTCCCCCCCGCATCCCCAAAGCGAGCTGACCAAGGAAAGGCCCTCATCCTGTGGGGTGGCAGCCGTTGCTGCCGCTGCCCAGAGACAGACGCTGAGAAGGACCTGCAAGGCCTCCAGCACCTCCTCTCTCAACGGTCAGTGCTCCAGTGGTCAGCCTTCCATGAAGTTTGTGATGGACACTTCACAGTTCTGGTTCCGGCCCCAAATCAGCAGGGAAGAAGCGGACGCTCTGCTCAGGGACCAGGAGCCCGGCGCCTTCGTGATCCGGGACAGCACCTCGTACCGTGGCGCCTTCGGCCTGGCCATGAAGCTCGTGAGGCACTACCTCATCGAATCCTCTGCGAAAGGCGTCCGGCTGAAGGGAGCGGCTGAGGAGCCCTTCTTTGGCAGCCTGTCCGCCCTGGTGTTCCAGCATGCCATCACCCCCTTCGCACTGCCCTGCAAGTTGCGCATCCCCTCACCCGATGTCATGCCACGGGAGGACCCGAACGTCAACACGTCAGCACAGCCAGACGGTCTGAGGCCCGGTGCTGCCTGCAACTTCCTGTACCTGAACTCAGTCAACACGGAGACCCTGACGGGGCCGTGTGCGGTTGAAAAGGCTGTGTCCATGAGCCTCGAGAAGGAGACGCTGCCCTCGCCCACCATCGTCAACCTGAAGGTGTCTCCCAAGGGTGTGACGCTCACCGACGTCCAGAGGAAGCTTTTCTTCCGCCGGCACTACCCGGCCCACCTGCTGAGCCACTGTGGTGAAGATCCCAAGAGCCGAACGTGGCAGAAAGAAGGCAGGAAAGCAAGGATTTTCGGTTTTGTGGCGAAGGGTGGTGATGCCACCACAGAGAACGTGTGCCACCTGTTTGCGGAGTATGACAGCCTGCAGCCCCCCAGTGTTGCCATCGAGCACATCAGGGCTATCCTGGGACTGCAGTCGCTGCAGTagactggactgcactggactggtCTAGACTGGTCTGGTCTGGACTGGACCATGTGGAGTTGCAGCAAACTGCTCTGTAAACCAGACTGGGAAACACAGCAAAAGGGTGGCTCACACCACTGGCCACACTGGGCAACATGGCCACAGATAAGATACCACAAACTAAAGCCAGCTGGACAACAGCAGGATATACCAGTGCCTGGAGGAAACCCAACTGGAAAATATTGTGATGGATGAGACCCCACGGCTCGCCACCCTTGCCAATGTCATGATGGTTTGGCAGTGTGTTAAACCCGCCCAGGGGATATCGCGACAGGCCGCTGCACACGGTTAACCCAAATGGGCAACACAAAGATCAGCCCGGATTGTCCCGCCAATTCAGAGCTCAGAGGCGTGGGACTCTCCCTGAGACCCACAATGCACCTTACAGAGAAATTGGCAAAGAATCTGCTCACAGCACCTTAAAACTGAAATCCTTTGAACAagactgcaaaataaaacacgctgaaaaaaaaacatgaagaccTTTTTCAGGTGGAAATCTCTGTTGCAGGGACACTCATCGTCCAGGGCCCCAGATTCTCCCTTTCCTCTTCACTCTTGTTGCCAAGTGAGTCCTGATCTCGGGGCAGAGCCAGGCGCAGTGTCCCCTTTGCACAGCCCAGATGATTAAGGGGCTCTGGGGCTCGTGGAATGTGCCTCGTCATTACAGATGTTGTGTTTCAGGACCGGAGAATTATGGCATATTATAATAATGGGCTTTTtatgctgttttttaatttgtttttaaatgacatgtaGGCACAAACTGTGCTTTCCTACATGTCATCTTGATAAGATTTTTACTGACCTGTGTTTCACATGGCAAGTCTTCATATTTCCCTGTCAGTtctgcacacagagacagagtaTTTATTGTCgttactctctctcttttcgCAATAATTTTGATCCTTTCCGGAGAGTGGTGCGTCATTACTGCTCATATCGAATTCCAGAGTATTAAGATGCACAAGAAAACTGCTTGCAGTGGAGGTTCCTGTGGtcgattttgtttttattattttgttattgtaatttttac
>TU18379
CCTCTGTGTCTCCTCTTTGTGTCCACTGTATGTCCGCTTTCATCTCCATGTTTCcttatttctgtcttttatGTTCTAAGTGTCTGACCTCGTGCCTCTGCCCCTCTGCAGCACCCACTCCCTGCTCAGCGAGGACTCGGAGAGCAGCGAGCGGCGACTCTTCAGCCCGTCAGGCTGGTCCAGTCAGGCCAGCAGCCCATACCCCCAGTCCCCTGGGCCCCACAAGCCGTTCTTCTCAGACCACAGCCTGGACAGGTACGACAGCAGGGCACTTGCCCAGCAGCCCCCCAGCGGACTGTCATACAGGAAGggcccccaccaccaccaccacccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccct

Function

GO: NA

KEGG:

id description
K18080 TNS; tensin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016635 True 3359 mRNA 0.58 13 26600093 26611394
TU18379 False 395 TUCP 0.57 2 26605526 26657425

Neighbor

gene id symbol gene type direction distance location
AMCG00016646 NA coding upstream 16427 26583454 ~ 26583666 (+)
AMCG00016637 NA coding upstream 27736 26559807 ~ 26572357 (+)
AMCG00016639 NA coding upstream 78486 26517843 ~ 26521607 (+)
AMCG00016641 NA coding upstream 85806 26509041 ~ 26514287 (+)
AMCG00016632 NA coding upstream 132091 26462323 ~ 26468002 (+)
AMCG00016636 NA coding downstream 8020 26665445 ~ 26667680 (+)
AMCG00016647 NA coding downstream 26217 26683642 ~ 26700201 (+)
AMCG00016650 NA coding downstream 200293 26857718 ~ 26869181 (+)
AMCG00016654 NA coding downstream 235854 26893279 ~ 26897534 (+)
AMCG00016655 NA coding downstream 254543 26911968 ~ 26918768 (+)
G14781 NA non-coding upstream 154331 26442152 ~ 26445762 (+)
G14768 NA non-coding upstream 202166 26397649 ~ 26397927 (+)
G14755 NA non-coding upstream 217673 26380051 ~ 26382420 (+)
G14703 NA non-coding upstream 295751 26234326 ~ 26304342 (+)
G14800 NA non-coding downstream 47572 26704997 ~ 26705204 (+)
G14802 NA non-coding downstream 54806 26712231 ~ 26713129 (+)
G14803 NA non-coding downstream 58144 26715569 ~ 26715801 (+)
G14992 NA non-coding downstream 605465 27262890 ~ 27274297 (+)
G15005 hoxb7a,hxb7a,hoxb7,hoxb7ab non-coding downstream 623999 27281424 ~ 27282569 (+)
AMCG00016638 krt222 other upstream 51881 26527319 ~ 26548212 (+)
AMCG00016640 NA other upstream 100851 26489938 ~ 26499242 (+)
AMCG00016633 NA other upstream 166437 26427339 ~ 26433656 (+)
AMCG00016625 mllt10,LOC106942732 other upstream 297579 26285802 ~ 26302514 (+)
AMCG00016607 NA other upstream 649917 25940528 ~ 25950176 (+)
AMCG00016663 NA other downstream 308872 26966297 ~ 26993948 (+)
AMCG00016683 NA other downstream 885061 27542486 ~ 27553120 (+)
AMCG00016691 NA other downstream 931054 27588479 ~ 27604879 (+)
AMCG00016690 NA other downstream 955680 27613105 ~ 27626090 (+)
AMCG00016699 LOC106607176 other downstream 1120002 27777427 ~ 27799126 (+)

Expression


Co-expression Network