AMCG00016640


Basic Information

Item Value
gene id AMCG00016640
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26489938 ~ 26499242 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016640
ATGTCGTCCGTCTTCGGAAGAAATAGGCCATCGTACCTGGTGCCCACTGGCGCGATCATGTCGCCCGCCTATCTTGAAACTGCCCAGCTGAGTTTATCCGTGAGGCCGGAGCGCAAAGCCAACAGCTTGGGTGGCATCACCCCGGCGACCCGCATCGCCACCTCCAGCTTCCCACTAGCCTTtgtgtgtgttttccagctGAGCTCCATGTCCCAGGGGAACGCCAAGCTCATCCTGCAGATTGACAATGCCCGGCTGGCCTCTGACGACTTCAGGGTCAAACTCTCTAGTAATGAGATGACAGGGCTGCGCTCACGACTGGGGGGCCAGGTCAACGTGGAGTTTGATGCCCTGAGCAAGCAGGTGACAGTGAGCACCGAGGCACTGCAGTCCAGTAAGTCGGAGATTGCGGAGCTGAAACGTACCATCCAGGTGCTGGAGATAGAGCTGCAGTCCCTGCTCAGTCTGAAATCTGCCCTGGAGTCCACACTGCAGGAGACGGATCAGCGCTTCAGGGGCGAGCTGCAGCGGCTGCAGGGCTCAGTGCACCTTCTGGAGGAGGAGCTGACGCAAGTGCGTGGAGACATCGCACGGCAGGGGGATGAGTACCAGCGGCTCCTGGACATCAAGTCACGGCTAGAGCTGGAGATCTCTGTGTACCGGCGCCTGCTGGACGGAGAGGACACCAGGTACGCCACGACCCGACTGCCACGAACACCGCtaataacacatacacacacacactcacagaatAATACAGACCTGCTGACTAACACCTGCATCCGTTCCCTGTGTCGCTGCAGAACCGTTAACAGGGATGTCGAGGCCACACAACACCCTGCCCACTGGGTCTGCTGGTGCCAGGAGAAGAGCAGCAGTCAGCACGGCCCGCAAGCCTCCCCTTCAGTCATCAGTTAA
>TU18352
cccgggctctgaatgacgacgggtgacacagaaactgtaaatcggatgtgtttgagaatgaaacacactggtagccaagagaataagctttcaaacgatgtgcgcattgtaggaatacagtgtgacttctatgcacaggagctgtgtgtaacactgacaaataatgcttaagaggattacattatttttaagtttttggtaatctaaacttttttttaacctctgacAGTTTACAGCTTACCTTTGTagcatttcagGTTATTCattggacttgaactgcttacatttcaataaaaactggaaacttttgaccggtagtgtacatttgtatcaatgtatatatgtatgttgaCATGTTTGTATGTACGTAGttctgtatgtttgtatgtacatAGTTATTTAGTTggcatgtatgtttgtatgttggCATGAATCTTTGTGTGTACGTagttatgtatgtttgtatatacgTGTTATGTATGCCCCTGTAAGTAAGTGAATTCCTGCTGCCTGTGCTGTAGAGAGTCTGCTGTCCACGCGGAAGGTGAAGATGATCGtggaggaggtggtgggggggaaggTGGTGTCCTCTCGGGTGCAGGAGGTGAATCCGAGGTTCTGACACCTCCCCACGAACAGCCACACAACACCCTGCCCACTGGGTCTGCTGGTGCCAGGAGAAGAGCAGCAGTCAGCACGGCCCGCAAGCCTCCCCTTCAGTCATCAGTTAATAGAAACCTCCATCCCTTCATTAGGGTCACTCTCACTGGCAGGAGTCGCAGCACATCCACTTTTAAACATACAGAGTTGATAGAGATTTAGGAAACAGAAGTGACTGTGCTGCACTGTAGCCGATCACTCTGTGTTGTGAAGGATTTGGACATTTGATTTAAGGAGTGGCCTACAGTTCTCACTGGggtggggctctccaggaccagggctggagagcacagatactcactcacacacatccaCACTCTCAcgctcactctcacacacactcctacTCTCTCTCACAAAACAGGTTGCTGTAAAACTGTGGCCCACAGGCACATGGCAGATACAATGACTCTGCTGTAGGATATTCTTTGTGTGAAGCGAAGTGATCGAATCTGTAGGTCAATGAATCTTTGATCCGGTTTCACTCCTCACATCCTGACCCAGACCACACTCCCCTCACTCACTGCAGTATCCCTCAGACCCAGCAGTTTGCATGTGCAGCTCTCTGTAAACCACCACCGGCACTAGACCTGGGGAAGGGGCTCAGGGGGTTCAGGGGGGGCAATACACAATTCAGGTAGCTACTCGAGGGCTCAGGGTGGATCAGGCACAAGCTTGCTCTGCCTTCGAGGACCGCGTCTAAACTGATGTCCCAAATGAGACAGAAATCCACGTTGCGGGACAACTTCGTCTGGCCGTGCGATGTAaagcaggatttgtttttactgaGTGTAACTGAAACACTAAAGCCTCAATGAAGTCTCAACAACAGACTGACAATAAAAGATCCTGAAACCAGCTCTGTGACTCCACTTCCTCTTTTAGTTTTCCCCTGAcctcaatttaattttttctgtacTGAGAAATCCCATCATACCTGGCTCAAAAGTGCAGACATGCAATAGACATATCGTGAATGTGCCAACGAGCTGCTGCAGGGGCGGTGTGGGGTAGAGGAGGGAtacaaagcaatgaatgctgggaagtGCTCTGTGTAGTGGGAAAATAATGGCTTGAAGTAAGTGTTTACCCTGCGTTGTATGGGATGAGAGTGCAGTCTCCAGCCCATATGGTCTGGTGTGTGTTCCTGTGTATACTGTACTTTACCATATCTTTACCATGCTACACTTCACTgcactttaatgtattttctccattattttccatgtttttactatgttttactatattttaaatgttaacatattTTGACACTGATTTtactacatttttattatatttcatatttctaccatgtttttaacctttttttttacaccacTATAGATTACCATggtacagcacactgcactcTACATATTTTAACCATATTTCTTACCATGGTAAACTATACCATGTGTTTACTGTGCTACACCATACTACTACTATGCCTTACTGTATGtcaggggataaaattaacttttttggccactagccactgtgtctggtagaaggaaaaacttaccagccacttggtatttttaccagccaaaggcaaacatcaccagaaatacatgagggtgcgtaaatgtgtcgtgaacatgttaaaacgtgacatttattcaggtaattaatcaatcacaataacaaaagctaatcgCTCACCTGTATAGACTCTTAGACAGGTGcgtatgagggaaaaggatctggatagaaaaacaagctcccacacagtttctacttgtaagtgttataaggtctttaaCCAAAACATCGCATCCTATTGAATTttaacacttgctagtagagactGTGTGCTGGAGCatagttttcaaattaatcaatgacACATTAAAtgacatggcagctaatggggatctgtacaaacacactaaactaacacatgagaaggggtgttatatgatGACACACTGtcgctcttcatactcctcttcctcttcagtgctactcccttctctggatTTCCGCgtgtcattaaaagtaattacatttcaaagtattttggTATGGCccttaaaagtcattaaaagtaattgtttataagctacaatgtaaaagtctgtttctctctctcatctgcactCTGA

Function

GO:

id name namespace
GO:0030145 manganese ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016640 False 918 mRNA 0.59 7 26489938 26497205
TU18352 True 2768 lncRNA 0.43 2 26495422 26499242

Neighbor

gene id symbol gene type direction distance location
AMCG00016632 NA coding upstream 21936 26462323 ~ 26468002 (+)
AMCG00016631 NA coding upstream 72961 26411485 ~ 26416977 (+)
AMCG00016626 NA coding upstream 118798 26355605 ~ 26371140 (+)
AMCG00016619 NA coding upstream 225645 26261732 ~ 26264293 (+)
AMCG00016620 NA coding upstream 252361 26233114 ~ 26237577 (+)
AMCG00016641 NA coding downstream 9799 26509041 ~ 26514287 (+)
AMCG00016639 NA coding downstream 18601 26517843 ~ 26521607 (+)
AMCG00016637 NA coding downstream 60565 26559807 ~ 26572357 (+)
AMCG00016646 NA coding downstream 84212 26583454 ~ 26583666 (+)
AMCG00016636 NA coding downstream 166203 26665445 ~ 26667680 (+)
G14781 NA non-coding upstream 44176 26442152 ~ 26445762 (+)
G14768 NA non-coding upstream 92011 26397649 ~ 26397927 (+)
G14755 NA non-coding upstream 107518 26380051 ~ 26382420 (+)
G14703 NA non-coding upstream 185596 26234326 ~ 26304342 (+)
G14704 NA non-coding upstream 248694 26239170 ~ 26241244 (+)
G14791 NA non-coding downstream 90364 26589606 ~ 26657318 (+)
G14793 NA non-coding downstream 127465 26626707 ~ 26633192 (+)
G14800 NA non-coding downstream 205755 26704997 ~ 26705204 (+)
G14802 NA non-coding downstream 212989 26712231 ~ 26713129 (+)
G14803 NA non-coding downstream 216327 26715569 ~ 26715801 (+)
AMCG00016633 NA other upstream 56282 26427339 ~ 26433656 (+)
AMCG00016625 mllt10,LOC106942732 other upstream 187424 26285802 ~ 26302514 (+)
AMCG00016607 NA other upstream 539762 25940528 ~ 25950176 (+)
AMCG00016598 NA other upstream 731012 25725253 ~ 25758926 (+)
AMCG00016584 NA other upstream 1085098 25370296 ~ 25404840 (+)
AMCG00016638 krt222 other downstream 28077 26527319 ~ 26548212 (+)
AMCG00016635 NA other downstream 100851 26600093 ~ 26657425 (+)
AMCG00016663 NA other downstream 467055 26966297 ~ 26993948 (+)
AMCG00016683 NA other downstream 1043244 27542486 ~ 27553120 (+)
AMCG00016691 NA other downstream 1089237 27588479 ~ 27604879 (+)

Expression


Co-expression Network