AMCG00016643


Basic Information

Item Value
gene id AMCG00016643
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26582526 ~ 26592300 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016643
ATGCAGCAGCCCGGTTCTGGAATAGCAGTGCGGGCCTGCACAGTGTTGCTTTGTGACGCCAGCAACCTGCAGCACATGCGCAGATCTGCTCTGAACCCACGCCCAAATCGTTACAATCTGTGCACTTCGTCTTTATCGAGGCTCACCTGTTTCACAGAGACAGGTTTCAGTCTGACTGTCGAGCTGTCCCCCCAGGCTGCTCTCGGGCAGGCAGTGGCACGGAGACGTTTCTTGCCCGCAACTGTGAAGGCGGGAGGGATGCGCATCGTCCAGAAGCACCACAGTGGGGAGCATCAGAGCCAGGACCGGGATAAGGACACCAAGACAGAGTGGGAGAGCGGGACCAGCCCGCCGAAGCCAACGTTAGTCATCTCAGGAGCTGTAACGCGGGGCGATAAGGATTTCCCCCCTGCCGCTGCTCAGGTGGCCCACCAGAAGCCGCAGCCCTGCGTGGAGAAGCTGCCCCCTGTCCACCACATCAACCAGCACATCCACCAGCCCCGCAAGTGAGCTGCCCGCGCCCGAACCGCTGCCAAGAGGGGCGCCCGTGGGTGAGGCGACCTGGCTGCACAGCAGAGGGGCTGGGGGGTTGGGACTACAGGAACCATCACACAGGAAAGAACCATCTGCTCATCctctccttttttaaatttttattctgtgtctttctctgttttctctctcttgtatAAAGAGTTACCACTTGGCCGTGTTAGGTGGGTTTGGGGGGTTAGGACTCAGGACTGCGCAGGGCCTTGCTGCGTATACCCTGGGCGGTCTCTGTGTGACTGCAGTACTGTAGACTGCAGCTGCCACAGCAGACTCGCCTCATCCACAGCACGCTCTGCACAGCTACTGCAGTCCACACCCCGCCATCCCCACACTGAGGCAGGAGGCCGGGGAACCTTGGTTAAACATATATTCCAAACCAGAACGCCGATGTAGAGATCATGTGAGTGTGAAACGTACTGGAAGCACCACAGAACAGTTTGGCAGCTGGTCTGAGCAGGTCAGGaaggtgtgttgtgttgtggtatGGACAGAGCACCACGGGTCTACTCACACAGTGCTGGCAAACACGTCCTATagaaaattgctttttaaaaaattaattcaatatatatatatatataaaccaaaatGTCCATTTGTACGAAACAAGTAAAAGCTTTATTCCACACTAGTGTGCAGATAATACAGTGATACCCAAGCCCTGATAAATCTTAGAAAGTCCCAGCCTGAGCTGTTACTTAGAACCCATTTCATCTGTGATGTCACAGAGCCCACAGAACTCTTCCCACGAACGTCGCAGTGTTCCGTGTGAATGCAGAGGAGAGCACTATTGTGCGCAGGTGACACAGCAGCCAGTCAtccagaataataaataaatagaaacaagCAGGAAAGCAGCATAACTTCTCTTTTACAGATGGAGCACATTAATGCCCCTGTGGAGGAGTTGGCACGGGGTTCAGCTGCAGTTGTTGCACCTGTCAGACTCGCTAAGTTCAGCTGCAAACTGCTGCTTCACCATGCACCACATCGCAATGaatgtattgaaaacaaaaggaatgGTCTgaccatgtatttttttaaatactgtaggtatatatttatatggtcTCTTGTGCTAAATGAACCAACAACCATAAGTACATAACATAAGTCATGCAAGAAATATAACtgtaaactgaaacaaatcCATCGATTAAGAGAGCGATTTAGGTATGGCAAATCATCAAGTTACTATAACGATGTTGCTGACAGACAGAGGTTCCCTATAGAAAATTCAAAACTACTCGTACAGTTGTTTAATACATCTGGACTTTAATATTGAACTTAACATCTGGATATTAGGGACAGAAAAACTGCTCACATGTACTTCAACAGTGTCCCATGACCAAAGTCAGCTCCATCTCTGGTATTCCAGGTCCATTTTTACTAGGTGCTGTTTAAGGCTTCTTTCATTCACCTGCCACAGAGATGAGAAGATAAGGGattataaataagtattttttttatatctacAAACCCAGGAGTAACTCTGCAGAGTCTGCTGTGATGCTATTTTTCAGACTTTGAGGTTGAGCTTTGTTAAATTTTACGTTTCTGTAGtgctaaagttttttttgttttgttttttttaaattgtattcatcCCGACTGAACTGAATGTGCTACATCTTAATAGCTTTGAATTGATTTTTCCTTAAGGTGTGTGGTCTGATTATGTAGCTTTGTGTTGCTGCAAAGGGTgttaatttttcttttatacacacatttatatctATAATTGCTATTTTTTGGACCAAATGAGGGGGGGGTTACATTTGCACTTTGAAGAGGAGGATATCTTTCTTTCGATTCTCTACTTGTAGAGCTGATTGAAGCCATAGCCTGCTTTCTGTTGCTTGATAAATTATTGTACCgatttttaaattgtcaatatgcgtaattaaaaaaaaaaaaacactaatcaATTAACAGTATGAGCAACAACACTGATTGCGGTCTGTATGTGGGACACGCAGCAGCAGAAACTGTCAGAAGTTGGCTTTTTCCAAACCTGATCAGTCACACCTGCGGGtctgttgtctgtgtctgtccaaGAGTCGGGACAAGGGAAGCGTGTCCCTCCAGGATTTAAACTGTTGTGAAGTGCACTGCTGTTGTTGGTATTCCGGTACTTTCTGTGATTAAAACTCTTGTTATTAAAAGCCTGGGATTGCGTCGTTGTAATGCTTTCCTATCCCACATTTCACCTTAAGAGAAACAACTGCACACCATCTGGAGAAGAGACcaggcagaaaaaaaagacaaaagtaaCAGCCATGGAAACTTAAGATTGAAcAGCAAAATACAGTGGAAGACAACAGCAGCTTTGAG
>TU18442
GACGTGCGGTGTGTCTGAGGGATGGTGCGGTTTTTCTTGGGGGTGCCATGGTGTGGCTGGGTCTCTCTGGGAATATGACTGAATCCTCACTAGTGTGCGTGTACAGGGCAAGGAGCGCCGCACGTTGTTCCCAAACACGACGAAGAAGACGAGGACCCGGGTGACCCGCAGACTCCGCCCAGCCGGGTCACATGGCTTTGTTTTGATTCTGAGAGCCCAGTGGATACGGAAGCAGTTTGCTGTTATCTTCATAAACAGAAGCGCTGTGCTAACACTAGTGGTTTTTATTTCGTTAATACTGTTAATGTAGAGTTATTTTGGTTTTTAGTATCATTTTAcccattattttctttgcagtatATATTTGTCAGGTGAAGGAGCTGGTGGAATGTCATCCCCGCCGCACGACAGACTGCCCAGCAAGGGCGGCCACGCTCCCGCAGTGAAGGCGGGAGGGATGCGCATCGTCCAGAAGCACCACAGTGGGGAGCATCAGAGCCAGGACCGGGATAAGGACACCAAGACAGAGTGGGAGAGCGGGACCAGCCCGCCGAAGCCAACGTTAGTCATCTCAGGAGCTGTAACGCGGGGCGATAAGGATTTCCCCCCTGCCGCTGCTCAGGTGGCCCACCAGAAGCCGCAGCCCTGCGTGGAGAAGCTGCCCCCTGTCCACCACATCAACCAGCACATCCACCAGCCCCGCAAGTGAGCTGCCCGCGCCCGAACCGCTGCCAAGAGGGGCGCCCGTGGGTGAGGCGACCTGGCTGCACAGCAGAGGGGCTGGGGGGTTGGGACTACAGGAACCATCACACAGGAAAGAACCATCTGCTCATCctctccttttttaaatttttattctgtgtctttctctgttttctctctcttgtatAAAGAGTTACCACTTGGCCGTGTTAGGTGGGTTTGGGGGGTTAGGACTCAGGACTGCGCAGGGCCTTGCTGCGTATACCCTGGGCGGTCTCTGTGTGACTGCAGTACTGTAGACTGCAGCTGCCACAGCAGACTCGCCTCATCCACAGCACGCTCTGCACAGCTACTGCAGTCCACACCCCGCCATCCCCACACTGAGGCAGGAGGCCGGGGAACCTTGGTTAAACATATATTCCAAACCAGAACGCCGATGTAGAGATCATGTGAGTGTGAAACGTACTGGAAGCACCACAGAACAGTTTGGCAGCTGGTCTGAGCAGGTCAGGaaggtgtgttgtgttgtggtatGGACAGAGCACCACGGGTCTACTCACACAGTGCTGGCAAACACGTCCTATagaaaattgctttttaaaaaattaattcaatatatatatatatataaaccaaaatGTCCATTTGTACGAAACAAGTAAAAGCTTTATTCCACACTAGTGTGCAGATAATACAGTGATACCCAAGCCCTGATAAATCTTAGAAAGTCCCAGCCTGAGCTGTTACTTAGAACCCATTTCATCTGTGATGTCACAGAGCCCACAGAACTCTTCCCACGAACGTCGCAGTGTTCCGTGTGAATGCAGAGGAGAGCACTATTGTGCGCAGGTGACACAGCAGCCAGTCAtccagaataataaataaatagaaacaagCAGGAAAGCAGCATAACTTCTCTTTTACAGATGGAGCACATTAATGCCCCTGTGGAGGAGTTGGCACGGGGTTCAGCTGCAGTTGTTGCACCTGTCAGACTCGCTAAGTTCAGCTGCAAACTGCTGCTTCACCATGCACCACATCGCAATGaatgtattgaaaacaaaaggaatgGTCTgaccatgtatttttttaaatactgtaggtatatatttatatggtcTCTTGTGCTAAATGAACCAACAACCATAAGTACATAACATAAGTCATGCAAGAAATATAACtgtaaactgaaacaaatcCATCGATTAAGAGAGCGATTTAGGTATGGCAAATCATCAAGTTACTATAACGATGTTGCTGACAGACAGAGGTTCCCTATAGAAAATTCAAAACTACTCGTACAGTTGTTTAATACATCTGGACTTTAATATTGAACTTAACATCTGGATATTAGGGACAGAAAAACTGCTCACATGTACTTCAACAGTGTCCCATGACCAAAGTCAGCTCCATCTCTGGTATTCCAGGTCCATTTTTACTAGGTGCTGTTTAAGGCTTCTTTCATTCACCTGCCACAGAGATGAGAAGATAAGGGattataaataagtattttttttatatctacAAACCCAGGAGTAACTCTGCAGAGTCTGCTGTGATGCTATTTTTCAGACTTTGAGGTTGAGCTTTGTTAAATTTTACGTTTCTGTAGtgctaaagttttttttgttttgttttttttaaattgtattcatcCCGACTGAACTGAATGTGCTACATCTTAATAGCTTTGAATTGATTTTTCCTTAAGGTGTGTGGTCTGATTATGTAGCTTTGTGTTGCTGCAAAGGGTgttaatttttcttttatacacacatttatatctATAATTGCTATTTTTTGGACCAAATGAGGGGGGGGTTACATTTGCACTTTGAAGAGGAGGATATCTTTCTTTCGATTCTCTACTTGTAGAGCTGATTGAAGCCATAGCCTGCTTTCTGTTGCTTGATAAATTATTGTACCgatttttaaattgtcaatatgcgtaattaaaaaaaaaaaaacactaatcaATTAACAGTATGAGCAACAACACTGATTGCGGTCTGTATGTGGGACACGCAGCAGCAGAAACTGTCAGAAGTTGGCTTTTTCCAAACCTGATCAGTCACACCTGCGGGtctgttgtctgtgtctgtccaaGAGTCGGGACAAGGGAAGCGTGTCCCTCCAGGATTTAAACTGTTGTGAAGTGCACTGCTGTTGTTGGTATTCCGGTACTTTCTGTGATTAAAACTCTTGTTATTAAAAGCCTGGGATTGCGTCGTTGTAATGCTTTCCTATCCCACATTTCACCTTAAGAGAAACAACTGCACACCATCTGGAGAAGAGACcaggcagaaaaaaaagacaaaagtaaCAGCCATGGAAACTTAAGATTGAAGTGAGTCACTGAAGACTGCACCTGCAAACCCATTCCTTCAGGAAACATTGCTTTGGGAGATAGTTAtgactggggggggggttccaAGGGGAATTTCTCCATCAAAGGTACAGCTCCGAGGAAAGTGTGCAACTGTCATCAAAAGTGCTTTAGTTCTGCTGAGTTTCTGAGTGTTACAAAGACTTTAAATGATGTACTTCCTGTTCTATGCATTCCTCATACATCTAAAGAACATTGTTTACTTCACAGGAGGGGATTATCCATAACACACACCAGTGTAGTTAATGAAActtttattgaaagaaaaagaaaaaacatatacaacaataacatgttcatttgtttttcttattatttctgtaaaacTGGAAAGTACAAATGTAAtccaaatataaaactatgcaTACTATCAGAATACTTCCtggttaattaaattattaaatcatacTGGCTTGcttttaatcaaatgttttttttttttgtcttcattaattatatttacagcAGCAAAATACAGTGGAAGACAACAGCAGCTTTGAGGTATGATTTGGTTTTCTGATGTGTACAATTAACATTCACCCTTACACTTGGCTCTGTGAAGCTGAGGTTGCATGGGTAATTTTTGAATCATGGCAACACTGTACAGGCGCTCTCCACTGCACGGTTTCAGTGCAACAGGTAACTCCTTCAGTGGTAATTCTGACTTATATGTTAGGATATACGATAACGAAACgcttcaattaaaaatataaaaagcaaagatTGTTGTTTGCTAAAGGCTAGGATGTTGAGGAGTAGTACAGGCAACGGCTAAGCTATCAAGATCAAACTATGATATTGGTTGATTGGTTGGTAGATTGAGAAACCTGGACTGTCGGATTTGTCCTAGAGGATCGCACTTGAGTGACCCTGGATTATGAAACCTGATCAATATGCGCTCTGTGGGTGTCGGGAGAGACGCTGGCCAGTCAGTCAATGACAGCACTGCCCCGGCAGGAGGCAGCCTCAGCCCAGGGAGGAACAGGTGCAAACTGCGTCTGAAACGCCCCACGCCCGCACATACCCTGCGCCTCTGCACCGGGTACTGTGAACCTGCGTGCAAATCTACAGCCAGGTCGGATCGTAAAGAGTTTGTTCCGACTCTGTAGCTCTAATCTACTGGCGCAAGTCTTCTCAGGTGGTGTTAATTGCGATGGGGATTGTTTTCGCCTAGAgaggaagataaaaaaaaaaaatgtcacttaCTTGGAACAAGCGAAACCTACAGTTGCACTTGAGCGTCTGGAGCGATTCCTATGAACTTCGTGCCACTGAACAGATGCTGAAGAAATGAACAATAGTTTCACACTTGGTATAACGGATACACAGGTCCGCTTGCTCTAACGTGTTATGGTGAGTGAGTATCTCGCTTCAATATGCAGAGCTACACTATCTACAACTGGTGCTCCAGTTTGTAATGTACAGATGTGTAATGCGTTCAATCCTCGAGGGACCAGcttatgtcaaataaaaataatcagaatgcaatattacaaaacaaaacgtgTATATGTTATAGTAAATAACTCGACAATACATCAAAACAGTAAAATGGAGGATGATGGGAGCAGCGTGGTGATAGAAAGATCATGCAATTCAATCCAGCTGTTGCCTGAGGCACATCTGTTCAGGTTGTTTTGCAGCTGGTGAAGTACATTCACCCATGTATCACACAACCACACATGAAAAAACCGAGCCTACCTGCACTGACAGTCACATTCAAGTACCCCCCATTCATAAATCTAAACAAAAGGACGAATGTCGCTACCTAATTTAAAAGCtctctaaaatataaatatacaacatttaCTATGTATACAAGAATTACAATCAATCTGTTGACAAAAGATGTTTAAATATTCACTTTGTAGCCTACTTAGCATTTAAAATGGTGACTCTAGAATGGAACCTAAGTGTAACAACTTGTAATCACAAACTTTACAGTTAACAGCTCAAGAAGACACACTGATGGGTTCAGATCACCCAGAAGATGTGCTGTCAGATAGATGTGTGTGAAAGCCTGGATATGTagcattatatacacacacattcacacattcactaacaaaatatgtaaaatatagaaGGAGTTGCCTTATTTTCATCTGTCCCTCACTGGGAATCGAGTGCTGCACACTGTGGATTTCTGTGCATCCCAATCAGAGCTCTGAGAAGCTGCCTCCCGACAAAACAGAACCGGAACAAAGGGGGACGGAGCTGCTCGTGGTATCTAGGGGGAGAAGGTGGTGGTGGTCTCGGTGTCCATGGCGAGGGAGGCTCTCTTCTGCTTGCAGGCGGCGTAGCGGAAGAAGCTCTCCTGGCTCATGCAGCCCAGCTCCTTGAGCAGCTTGAACAGGTCGTTGCGGAACTTGACCCCGATGAAGGCATACAGGAAGGGGTTGAGGCAGCAGCGCAGGAAAGCCAGGCTCTGCGTCACATCCATGGCGAAGAACAGGCGGTTGTCGGCATCACACTGCTGGCTTCCACCGTTGGCCAGGGTCACGGTGCGCACCAGCATGACCGCGTTGTAGGGCAGCTGGAAGAGCAGGAAGACCAGCACCACAGCAAAGATCACCCTGATGGCCTTGTTCTTCTCGAAGTTGCGCGCCTGCAGCAGCGTGCGGATTATCATGATGTAGCAGAACAGCATGACCAGCATGGGCAGGGCAAAGCCGCCCACCATCTGCCCCACCTGGATGCCAATCTTCAGCTCCACAGACTCGTTGAGGAAGGGCGTGCAGGTATTGCCAGACACCTTGGTGTGCACCATCTCGGGCACGGAGAAGAGTATCGCCAGGACCCACAGCACCACTGAAGACACCTTGCTGAAGTGAGCGGCCCGCGAGCGGTAGCGGTGGGCAGAAGCAGCCCGGGCGATGGCAAAGTAGCGGTCGATGCTGATGCACATGAGCAGCAGCATTCCACTGAAGAAGCTCACCTTGTAGATGCCATAGGTGGCCTTGCACACCCACAGCCCCAGCACCCACTCCCCCGTGTAGCTCACTGCCCAGAAGGGCAGTGTCAGCAGGAACAGGGTGTCAGCCGCTGCCAGGTTGAGCAGGTACACGTCCGTCATGGTCTTCAGCCTCTTGAAGTAGATGTAGGTGAGGATGACCAGCAGGTTGCCCACCAGCCCCACGAAGCAGATGACTGAGTACATGGTGGGCATGAACCAGGAGCGGAAGGATCGCAGCTCTGTCTTCTGGCACTGCTGCTCATAGAGGTTGTAATCGACTGTGATGCTGCTGGTGTCGTATTCAGCATCAAAATCTTCTGTCGTGTTTTCATTTTCGGATACACAGACCTGCAACACAAGAGTTCAGAAACCATCATTAGCATTTATCAACTCTTCAAGTCACATACATGCTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016643 False 2886 mRNA 0.46 7 26585396 26591527
TU18442 True 6459 lncRNA 0.54 4 26582526 26592300

Neighbor

gene id symbol gene type direction distance location
AMCG00016634 NA coding downstream 135706 26442159 ~ 26446820 (-)
AMCG00016630 eif1b,LOC105888686,LOC107549864,LOC103043673 coding downstream 200797 26380048 ~ 26381729 (-)
AMCG00016627 NA coding downstream 207924 26373019 ~ 26374602 (-)
AMCG00016628 NA coding downstream 238912 26339493 ~ 26343614 (-)
AMCG00016629 LOC108438403 coding downstream 273163 26304915 ~ 26309363 (-)
AMCG00016645 NA coding upstream 63288 26655588 ~ 26660740 (-)
AMCG00016642 NA coding upstream 69786 26662086 ~ 26664301 (-)
AMCG00016649 NA coding upstream 129487 26721787 ~ 26732090 (-)
AMCG00016648 NA coding upstream 151284 26743584 ~ 26749062 (-)
AMCG00016651 tbkbp1 coding upstream 224508 26816808 ~ 26822326 (-)
G14832 NA non-coding downstream 59479 26522804 ~ 26523047 (-)
G14818 NA non-coding downstream 114427 26430455 ~ 26468099 (-)
G14775 NA non-coding downstream 157276 26425032 ~ 26425250 (-)
G14765 NA non-coding downstream 187101 26394932 ~ 26395425 (-)
G14723 NA non-coding downstream 279067 26275177 ~ 26303459 (-)
G14882 NA non-coding upstream 148785 26741085 ~ 26742338 (-)
G14943 nfe2l1,nfe2l1b,LOC107565927 non-coding upstream 386858 26979158 ~ 26983486 (-)
G14999 NA non-coding upstream 651666 27243966 ~ 27245247 (-)
G15001 hoxb5a,LOC104941372,LOC103365501,LOC108278507,LOC108413114 non-coding upstream 671413 27263713 ~ 27265603 (-)
G15016 hoxb9 non-coding upstream 703785 27296085 ~ 27308958 (-)
G14843 NA other downstream 10885 26568669 ~ 26571641 (-)
G14816 LOC108438405,LOC108438407,LOC107666325,LOC107563033,LOC107666324,LOC107753907 other downstream 62129 26427339 ~ 26520397 (-)
AMCG00016623 NA other downstream 341136 26239082 ~ 26241390 (-)
G14676 NA other downstream 397748 26181744 ~ 26184778 (-)
AMCG00016616 sp6,LOC102212756,LOC101463567,LOC100707362,LOC107396441,LOC106564946,LOC103384358 other downstream 422604 26156521 ~ 26159922 (-)
AMCG00016644 NA other upstream 34407 26626707 ~ 26643493 (-)
AMCG00016662 cbx1,cbx1b,LOC108279860 other upstream 402873 26995173 ~ 27003707 (-)
AMCG00016671 hoxb6ab,hoxb6,hoxb6a,LOC105013254,LOC103045875,LOC107582892 other upstream 673587 27265887 ~ 27279334 (-)
G15026 NA other upstream 777290 27369590 ~ 27370139 (-)
G15067 NA other upstream 809376 27401676 ~ 27403922 (-)

Expression


Co-expression Network