AMCG00016649


Basic Information

Item Value
gene id AMCG00016649
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26721787 ~ 26732090 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016649
ATGACACAGAAGGTGGTTCTGATAACCGGCTGCTCCTCCGGGATTGGACTGGCCATGGCAGCCCATCTGGCCAAGGACAGCCAGCAGCGTTTCAAAGAAAGAGAGCACTTCACAGCAGCCAGAAAAGGCTTCTGCAGATACATGTTTATCCCTCTGAATCTCACAAGCAGAAATGAGGTGGTGGGCGAGGCGCTGGGCCACACGCTGGAGATCAAGCAGATGGACGTGTGCAACGAAGACTCCATCCACGCCTGCGTAGACAGCATCCCTGACCGGCACATTGATGTTGTGGTCAACAATGCTGGGGTGGGCATGATCGGGCCTATCGAGTGCCAGAGCATTGAGGAGATGAAGGGCGTGTTTGAAACCAATTTTTTCGGCGTGGTGCGGGTGATAAAGGAGGTGTACCCTGAcatgaagaagaggaggagcGGCCATATCGTGGTCATTAGCAGCGTGATGGGGCTGCAGGGGATCATGTTTAATGATGTCTACACCGCCTCTAAGTTTGCCATAGAAGGTTTCTGTGAGAGTCTGGTAATACAGTCACTTAACTTCAATGTCTTTATCAGTCTGATTGAGCCGGGCCCCGTGGTGACAGAGTTCGAGATGAAGGCGTACACCGATGCAGAGAGCAGCGATTACTCCGGCACCGACCCTGAGACAGCGGAGATGTTCACCGGCATGTACATCAACAACTCCAGAGCCATCTTCAGCAGCCTGGGCCAGAGCCCCGAGGACATCGCCGAGCACCTGGTCAAGGTCCTCACGGCAGAGGTGCCCCCTTTCCGGCACCAGACCAATGCGATGTACACACCACTGACCGCGCTGAAGCATGCCGACCCCACCGGCAAGCTGGCCAATGATGTCTTCTACAAGATGGTATTCCAGTATGACCATGTGATGAAGGCCAGCCTGGCCTGCTTCCGGGTGATGCGCTGGAAGGCACAGAAGGTCAACAATGGCATGAAGATGCTGGGGCTGAAGTGA

Function

GO:

id name namespace
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K11150 RDH8; retinol dehydrogenase 8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016649 True 990 mRNA 0.55 7 26721787 26732090

Neighbor

gene id symbol gene type direction distance location
AMCG00016642 NA coding downstream 57486 26662086 ~ 26664301 (-)
AMCG00016645 NA coding downstream 61047 26655588 ~ 26660740 (-)
AMCG00016634 NA coding downstream 274967 26442159 ~ 26446820 (-)
AMCG00016630 eif1b,LOC105888686,LOC107549864,LOC103043673 coding downstream 340058 26380048 ~ 26381729 (-)
AMCG00016627 NA coding downstream 347185 26373019 ~ 26374602 (-)
AMCG00016648 NA coding upstream 11494 26743584 ~ 26749062 (-)
AMCG00016651 tbkbp1 coding upstream 84718 26816808 ~ 26822326 (-)
AMCG00016653 NA coding upstream 101104 26833194 ~ 26839113 (-)
AMCG00016652 NA coding upstream 140805 26872895 ~ 26886881 (-)
AMCG00016657 NA coding upstream 156244 26888334 ~ 26891932 (-)
G14832 NA non-coding downstream 198740 26522804 ~ 26523047 (-)
G14818 NA non-coding downstream 253688 26430455 ~ 26468099 (-)
G14775 NA non-coding downstream 296537 26425032 ~ 26425250 (-)
G14765 NA non-coding downstream 326362 26394932 ~ 26395425 (-)
G14723 NA non-coding downstream 418328 26275177 ~ 26303459 (-)
G14882 NA non-coding upstream 8995 26741085 ~ 26742338 (-)
G14943 nfe2l1,nfe2l1b,LOC107565927 non-coding upstream 247068 26979158 ~ 26983486 (-)
G14999 NA non-coding upstream 511876 27243966 ~ 27245247 (-)
G15001 hoxb5a,LOC104941372,LOC103365501,LOC108278507,LOC108413114 non-coding upstream 531623 27263713 ~ 27265603 (-)
G15016 hoxb9 non-coding upstream 563995 27296085 ~ 27308958 (-)
AMCG00016644 NA other downstream 78294 26626707 ~ 26643493 (-)
AMCG00016643 NA other downstream 129487 26582526 ~ 26592300 (-)
G14843 NA other downstream 150146 26568669 ~ 26571641 (-)
G14816 LOC108438405,LOC108438407,LOC107666325,LOC107563033,LOC107666324,LOC107753907 other downstream 201390 26427339 ~ 26520397 (-)
AMCG00016623 NA other downstream 480397 26239082 ~ 26241390 (-)
AMCG00016662 cbx1,cbx1b,LOC108279860 other upstream 263083 26995173 ~ 27003707 (-)
AMCG00016671 hoxb6ab,hoxb6,hoxb6a,LOC105013254,LOC103045875,LOC107582892 other upstream 533797 27265887 ~ 27279334 (-)
G15026 NA other upstream 637500 27369590 ~ 27370139 (-)
G15067 NA other upstream 669586 27401676 ~ 27403922 (-)
G15076 NA other upstream 692803 27424893 ~ 27428651 (-)

Expression


Co-expression Network