AMCG00016650


Basic Information

Item Value
gene id AMCG00016650
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26857718 ~ 26869181 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016650
aaccatTAGTAGTAGTCACTGATAACTTTTTCTATCTTCAGTTGTAGAGTCCAGGCTGTGTCTGTGCACACCGGCCATGTCCTGACCTTGACCCCAGCGCTGCTCCACACTGGAAACACACCTGACCTGTGCGCAGCGCGGCCGGCCTGCGAGTGGGGAAACAGGGACGTGATGGTGACAAACAAAGCTGtcctgtttttctgttcttgttaTTCTGTGCGGCATGCCTCCGTGCAGCACAGACATCAACACTGCCTGTTGGCCGGGGAGGCGAGGAGGCAGTCAGCAGACCCGAGAGCCCCCTTCTCAGGCCCCCACTGCACTCCCTCCAGCCTCGCCCCCCATTGGCCAGCGGTGCCAGTGAAGCAATGGATCCGGGCGTGCTATTGGCTGAGTATATAAAGTCGAGGTGCTAAACGTGCCCCAAACAAGCCGGGGAAAGACGGAGCTTGAGGAACAGCAGTGGGACGTTGAGATCAGGTGCGAGTCGCTGCTGCTTCCGGGGCTGCACAGAGCCAGCTGTGACCGTGCAAGGGTTGCTCGCCATGAAGTTTGTGAGGTTCCTCATGAAAAACGCCGCTCTGGCCAACGTGCCGAAGCAAATCGACCATTTTTCCAAATTTTCGCCGTCTCCCCTGTCCATGAAGCAGTTCCTGGATTTCGgttCCACCAACGCATGTGAGAAGACGTCGTTCGCCTTCCTGCGGCAGGAGCTGCCCGTGCGACTGTCCAACATCATGAAGGAAATCAACCTGCTGCCTGACCGCCTGCTCAGCACACCCTCTGTCCAGCTGGTACAGAGCTGGTACATCCAGAGCTTGCTGGACATCCTGGAGTTCCTTGACAAGACTCCAGATGACCACAGAGTTTTGGGAGACTTCACGGACACCCTGGTGAGGATCAGGAATCGGCACAATGACGTTGTGCCCACCATGGCACAGGCTCTCATCTTTGACGGCACCACTAACCCTGCCCACCCCAACACCATTGGCAGCATAGACCCTTACTGCAATGTTGCTGAGGTTGTGCGAGATGCCTATGAAAGCGCCAAGATGCTCTGTGACCAGTATTACCTGGGTTCCCCAGACCTGGAGCTGGAGGAGATCAACACAAATGTGAAAGGGCAGCCCATCCACCTAGTGTACGTCCCCTCCCACCTCTACCACATGCTGTTTGAGCTGTTCAAGAACTCCATGAGGGCCACAGTGGAAAACCACGAGTCCAGCTACACCCTCCCGCCCATCAGGGTCATGGTGGCCCTTGGTGGAGAAGACATGTCAATCAAGaTGAGtgacaggggtgggggggtcccCCTGCGGAAGATCGAGAGGCTGTTCAGCTACATGTACTCCACGGCCCCCACTCCGGAGATTGGCAACTCGCAGCGTGCCCCCCTGGCTGGGTTCGGGTACGGCCTCCCCATCTCCCGGCTCTATGCTCAGTACTTTCAGGGGGACCTGCAGCTGTACTCGATGGAAGGTTATGGCACTGATGCGGTCATTTACCTCAAGGCCCTGTCCACGGACTCTGTGGAGAAGCTGCCAGTCTACAACAAGTCTGCCTGGAGGCACTATAAGGTGAGCCAGGAGGCAGACGACTGGTGCGTGCCCAGCAAGGAGCCACTCAACCTGGCCATCCACAGGGTGGCGGAGTGAGGCGTGAGGGGGAGCGCTGGCCCTGGCGCGTTGGCAACGGAACTCTGGCTGCTTGCTGGGAAAGGCAGTGGAGGACATGGTGGGGCGCTGCCTTGGGAAATGCACATCATGCAAATCTGTGTTGAAACCCACGTTCCTGGTGAACCTGCCTGTGCAGTATTCAGGAGGaggtgtgcacacacacagccacacacatgAAGGCTTAAGGCCCCTTTCTTGCCCCAAACAAACCACAAGTTTTCAGATAATAAGTTGAGAAATTCTgagtatataattttatatatataaatcaactGGCATTATGTTTGGAAGTTTTTCTTCTCTGGGGATCTGATTTCACAAAGCTAAGGGATCATAACCATTATAAACTGTCGCCACTCTCATGGTCTCCTCTGAATTGAGGAGACATCTGGCACCAAGGTGGGTGCAGAAGGCCAGTCATGCCAGCAGGGAGCGCGAAGCACCGCCATCCAAGCCTGCGGGACGGGAGGAAGGCCTGCGGACATGCGCTGAGCGAGGTCCAGAGTCCACATTGGGATCTGCAGGGGAAAGACAGGTTACCAATGAGCCCAAAACGTACAGCTCCCTGACTCTCTGTAACAGGGacaggtgggtggggggggtggaagGCATCTCATACTTTGTAGACTTggaaggaaaacatttatagATATTAAATCAGTGGGCTTTAATAGATACAGATGCCTTCCTTCATTTTACCAGCCCAGATGTAGGGTATAATGGTACCAATATTGCAAATGTTTGATACTGTCATTTAATTGTGAaacttatgtatatatgtgattATTGTATAGGCAATTGTCAGTGTTGCCACACGaagtattttactgtaaaatgtgtaacGGCACAGTTTAAAGCATGTCTTCTGAAGGTAAATCTATGGATCTGTTCCCAGTGACTCATCAGTGCAGTCATCGAAATGGTGGACTGTGTGAAAGTCCACTCAGAATGTGTGAGAGTTGTGTACCTACGCAGAGCTTGAACTGAAAATGTTCAACATGTGGGCACTCCACCCTGGACAGGAGAGATGTAACATCCGATTATTATGTgtcttatgtgttttttttgtttttttttaagcttcagATTAATCGAAGCTCTCACATCcatgtatattttgaaagttca

Function

GO: NA

KEGG:

id description
K00898 PDK2_3_4; pyruvate dehydrogenase kinase 2/3/4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016650 True 2804 mRNA 0.52 11 26857718 26869181

Neighbor

gene id symbol gene type direction distance location
AMCG00016647 NA coding upstream 157517 26683642 ~ 26700201 (+)
AMCG00016636 NA coding upstream 190038 26665445 ~ 26667680 (+)
AMCG00016646 NA coding upstream 274052 26583454 ~ 26583666 (+)
AMCG00016637 NA coding upstream 285361 26559807 ~ 26572357 (+)
AMCG00016639 NA coding upstream 336111 26517843 ~ 26521607 (+)
AMCG00016654 NA coding downstream 24098 26893279 ~ 26897534 (+)
AMCG00016655 NA coding downstream 42787 26911968 ~ 26918768 (+)
AMCG00016661 nfe2l1 coding downstream 108014 26977195 ~ 26990313 (+)
AMCG00016660 NA coding downstream 130086 26999267 ~ 27009741 (+)
AMCG00016668 NA coding downstream 489597 27358778 ~ 27364948 (+)
G14803 NA non-coding upstream 141917 26715569 ~ 26715801 (+)
G14802 NA non-coding upstream 144589 26712231 ~ 26713129 (+)
G14800 NA non-coding upstream 152514 26704997 ~ 26705204 (+)
G14791 NA non-coding upstream 200400 26589606 ~ 26657318 (+)
G14793 NA non-coding upstream 224526 26626707 ~ 26633192 (+)
G14992 NA non-coding downstream 393709 27262890 ~ 27274297 (+)
G15005 hoxb7a,hxb7a,hoxb7,hoxb7ab non-coding downstream 412243 27281424 ~ 27282569 (+)
G15025 NA non-coding downstream 500408 27369589 ~ 27370138 (+)
G15224 NA non-coding downstream 1247737 28116918 ~ 28117190 (+)
G15226 NA non-coding downstream 1249362 28118543 ~ 28119649 (+)
AMCG00016635 NA other upstream 200293 26600093 ~ 26657425 (+)
AMCG00016638 krt222 other upstream 309506 26527319 ~ 26548212 (+)
AMCG00016640 NA other upstream 358476 26489938 ~ 26499242 (+)
AMCG00016633 NA other upstream 424062 26427339 ~ 26433656 (+)
AMCG00016625 mllt10,LOC106942732 other upstream 555204 26285802 ~ 26302514 (+)
AMCG00016663 NA other downstream 97116 26966297 ~ 26993948 (+)
AMCG00016683 NA other downstream 673305 27542486 ~ 27553120 (+)
AMCG00016691 NA other downstream 719298 27588479 ~ 27604879 (+)
AMCG00016690 NA other downstream 743924 27613105 ~ 27626090 (+)
AMCG00016699 LOC106607176 other downstream 908246 27777427 ~ 27799126 (+)

Expression


Co-expression Network