AMCG00016651 (tbkbp1)


Basic Information

Item Value
gene id AMCG00016651
gene name tbkbp1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26816808 ~ 26822326 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016651
ATGACGAATAACATCCTGGGCATTATACTGGGGCTGAGGGTGAATCTGGCGCTGGCCTACACCGAGCTGACTGAGGAGCTGTGTCGGCTGCAGACCCTGAGCGCCAAGCAGACTGAGATTCTGAGGAAGGTGTCCCAGGAGCAGGCCAGCCCAGTCCAGCGGCACTCCCCAGTGCTGCAGCAGCGGCACTCCCCCAGCCCACAGCGGCACTCCCCAGCCCCCCAGCGCCGCTCCCCGGTGCCGCAGCGCCTGTCCCCGGATGTTCACCGCCGCTCTCCGCTCCCGGAGATGAGTGACGGCCCGGCCTCCTACTCTAGCCGGCCGCCCAGCCACCACCTGCGCGCCAGCTTCCAGGGCCGGCGCAGCTACTCCGAGGTCAGCGACCCCTCCGCCTATCAGCGGCCGCCTCGGTTCCAGCTGGACCCGGTGTCCACTCTGCCCAAGCCACGGCCGTACGGAGAGGGCTACCTGAAACAGCAGCATCACCATCactccccccaccaccaccagcagcagcagcatcatcaGCCGCAGCACCCGGCACAAGCTCCGCCCTCCTCTCCGGTGCAGGGGGGGGGCGGCGGCAGCGTGGCCAGCAGCCCCCGCCACACCAGGGAGCTTCCCTTCCCTCTTTCCGAGGTGCACCACCTGCGGTTCGAGCAGCCGGCCCCGCCCCCTCCGCCTCCACCGCCCACGCCCCCCTTGCCCCCCCAGTCCTCAGAGGATGAGGAAGAGTGggcctgcccccccaccacgcCACCCGGCTCGCTGGGAGGAgctgctgccgccgccgctgccgccgccgccgccatCCGGGGCCCATCCTCCTGCTCCACCTTCCCCATCCCTGCCGGCCCCAGCACCCTCACCTGCCACCCGGCAGCCTACCTGCATCCCGACCACGCCCAGTCCTGGCCCTCCATCAACCTGTGGATGGAGACAGAGGACAACGACATCAGGAGCTGCCCCCTGTGTCAGCTGGCCTTCCCCATCGGTTACCCTGATGACGCCCTGATCAAACACATCGACACGCACCTGGAGAACAGCAAGATCTGA

Function

symbol description
tbkbp1 Predicted to enable metal ion binding activity. Predicted to be involved in I-kappaB kinase/NF-kappaB signaling. Predicted to be active in cytoplasm. Orthologous to human TBKBP1 (TBK1 binding protein 1).

NR:

description
PREDICTED: TANK-binding kinase 1-binding protein 1

GO: NA

KEGG:

id description
K12652 TBKBP1; TANK-binding kinase 1-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016651 True 1056 mRNA 0.69 4 26816808 26822326

Neighbor

gene id symbol gene type direction distance location
AMCG00016648 NA coding downstream 67746 26743584 ~ 26749062 (-)
AMCG00016649 NA coding downstream 84718 26721787 ~ 26732090 (-)
AMCG00016642 NA coding downstream 152507 26662086 ~ 26664301 (-)
AMCG00016645 NA coding downstream 156068 26655588 ~ 26660740 (-)
AMCG00016634 NA coding downstream 369988 26442159 ~ 26446820 (-)
AMCG00016653 NA coding upstream 10868 26833194 ~ 26839113 (-)
AMCG00016652 NA coding upstream 50569 26872895 ~ 26886881 (-)
AMCG00016657 NA coding upstream 66008 26888334 ~ 26891932 (-)
AMCG00016659 NA coding upstream 79050 26901376 ~ 26901744 (-)
AMCG00016656 LOC107677865 coding upstream 118654 26940980 ~ 26946564 (-)
G14882 NA non-coding downstream 74470 26741085 ~ 26742338 (-)
G14832 NA non-coding downstream 293761 26522804 ~ 26523047 (-)
G14818 NA non-coding downstream 348709 26430455 ~ 26468099 (-)
G14775 NA non-coding downstream 391558 26425032 ~ 26425250 (-)
G14765 NA non-coding downstream 421383 26394932 ~ 26395425 (-)
G14943 nfe2l1,nfe2l1b,LOC107565927 non-coding upstream 156832 26979158 ~ 26983486 (-)
G14999 NA non-coding upstream 421640 27243966 ~ 27245247 (-)
G15001 hoxb5a,LOC104941372,LOC103365501,LOC108278507,LOC108413114 non-coding upstream 441387 27263713 ~ 27265603 (-)
G15016 hoxb9 non-coding upstream 473759 27296085 ~ 27308958 (-)
G15066 NA non-coding upstream 572793 27395119 ~ 27398583 (-)
AMCG00016644 NA other downstream 173315 26626707 ~ 26643493 (-)
AMCG00016643 NA other downstream 224508 26582526 ~ 26592300 (-)
G14843 NA other downstream 245167 26568669 ~ 26571641 (-)
G14816 LOC108438405,LOC108438407,LOC107666325,LOC107563033,LOC107666324,LOC107753907 other downstream 296411 26427339 ~ 26520397 (-)
AMCG00016623 NA other downstream 575418 26239082 ~ 26241390 (-)
AMCG00016662 cbx1,cbx1b,LOC108279860 other upstream 172847 26995173 ~ 27003707 (-)
AMCG00016671 hoxb6ab,hoxb6,hoxb6a,LOC105013254,LOC103045875,LOC107582892 other upstream 443561 27265887 ~ 27279334 (-)
G15026 NA other upstream 547264 27369590 ~ 27370139 (-)
G15067 NA other upstream 579350 27401676 ~ 27403922 (-)
G15076 NA other upstream 602567 27424893 ~ 27428651 (-)

Expression


Co-expression Network