AMCG00016652


Basic Information

Item Value
gene id AMCG00016652
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26872895 ~ 26886881 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016652
GCTGCAGTGAAAAGAGCATCTGAGGGCGCAGACTTCAGTCAAACGCAACGCAGAGAGCGGAGTAGCGCCAATTCTCAGacAGCTGATTGCTTCTCTGCCATGTCCAGCAGTTAGTTGAGACGGGCCTTGTCGTTTTCCTGCAAGATCGATTCTTGatttctccctccctgccttGGACGGATCACTGCCACAGCCTGAGAGATGAGCACGCTGGACAGGTCCCCGGCCGTGTGGCACCCCCCCGGTCACTCtcgcagcagcagcactgcctCCTCGCGCCACACTCGACAGAACTCCAGGGACTGGGAGGTAATGCAGGACATCCAGAGCTGCAGCAGCGGTGGTGACGTGAGCGTGGAGACGGTGCGGGATGTGGCGTTGCCCGCCAACTACCAGGGCTTCCTGCTGAAGAAGAGGAAGTGGCCGCTGAATGGCTGGCACAAGCGCTATTTCGTGTTGGACAAAGGCATCCTTGGATATGCTAAAACGCCACAAGATATCGCCAAGGGGAAGCTGCATGGCTCCATCGACGTCAGCCTGGCGGTCATGTCCATCAACAAGAAGTCCCGGCGCATAGACCTGGATGCCGGTGACAGCCTGTATCACTTGAAGGTGAAGTCTCCTGAGCTGTTCTACATCTGGGTGACGAAGCTGTGTGCTCACCGCGTGTTCAAGAAGAATGAGGCTGTGCGTCTGCACAAGGAGTTCCTGCGTGCACTTGCCCAGAGCAACGGCCCGATGCCAGACATGGCTGACCTCACCCAGAGCAACGGAGCGCTGCCAGGCATGCCCACCTACAACAGAGCCACCCCCCTGCAGAGCCTGCCCCCAGGGACCCCCATAGTGACCAGCAAGGTTGACGCCTGGCTGCAGCAGACCCAAAACTCTGATTTCTGCTCCCAAGAGCTGGCGCAGTGCCAGGCCGATCTGACCGAGCTGAGCCGCATGGTGCAGAGATTGCAGTCGATGCAGCCCTCGCAGTCCTGGAGCTGCAACGGTGTCAGCATCCAGAACAACACACTGGAGAAACCCCGGAAGAAAGCCAGCAAGATCTGGGGCAACTCGCAGAGCCTGTCCCGAGTGGAGGCCAGTATGGTCTCCTCGGTCCCCAGCATCCCAGACTACGTTCATTCGCAGGCCCCCATGCCCCCAGAGACACACAAGCTGCAGCACAACATCTGCTCCCTGTCCCAGAGAGtGCACACGTCATTGAAGTCTGTGCTGGACACTCTGTATACGGAGCGTGAGCGGCTGCGCCAGGCATGGAGCGGGCCAGACCTGCGCCAGGCCACCTCTGCACAGTTTGCCACGCTGTACAGTACCATGTCTGAGATGGAGATGCAGTCCCACCTGACGCGCGTCCAttccctgtctctgtcctccGATTCCACAGATGAGTCCTTCCGCACCGTCAACCAGTGCCCTCTGTCCATAGCGGGTGAGCGGATGTCCTTGGCGAGCACCCAGTCGTATGCAGAGTATTTTGACGCCAGCGACGTGATTGTGTGTGGGAGCTCGGATGAAAACGAGGCTTCGGACGACTCCTGTCTGAGTGACGTCACCAACAGCAACTCTGACCCTGAGGACTGCCACATATTTGACGATTCCCTGACTCTTGTCCAACTTCCCCCGGTAGTCTCTCGGAACTACAGAGCCAGCCTGTGCATCTCGGGCCCCCGCTGCGCCCCCAAGGACACGGGCCGCCGCAAGACGATCCCTGCGCCCGGTCCTGACAACAGCCACATCGGTCTGTGGAACATCCTGTACAACAACATGGGCAAGGACCTGTCGCGTGTGTCCATGCCCGTGCCGCTGAACGAGCCGTTGTGCTTCCTGCAGCGCCTGTGTGAGGAGCTGGAGTACTGCGAGCTGCTCGACACAGCCAACCGCATAGATGACCCCTATGAGCGCATGGTGTACGTCGCAGCCTTTGCCATCTCCTACTACCTGTTTGGCAGCTCCCGCAACCGCTACAAGCCCTTCAACCCCGTCCTGGGAGAGACCTACGAGTGCCTGCGGGAGGACAAGGGCTTTCGCTATGTGGCCGAGCAGGTCAGCCATCACCCCCCCATCTCTGCCTGTTATGCAGAGTCTGAGAACTTCACATTTTGGCAAGACCAGCGCTGGAAGAACAAGTTCTGGGGCAAATCTGTGGAGGTCATCCCTGTGGGCATGGTGAACATCACGCTGCCCAAGTATGGAGACCACTATGAGTGGAACAAGGTGACCACCTGCATCCACAACATCCTGAGTCCACAGCGCTGGCTGGAGCACTATGGCGAGATACTGATCCGCAACACCAAGGACAGCTCCTGCACCTGCAAGATCACCTTAGTCAAGTCCCGCTACTTCAGCCCCGAGACCAATGAGGTGCGGGGTGTGGTCCTGGACCAGGCAGGCAACACTGTCCATAAATTTGGGGGGTTCTGGCACGAGGGCATCTTCTGTGACACCCTGCCTACACCCCAGTGCATCTGGAAACCACACCCGCTTCCTCCGGATCACATGCAGTATTATGGGTTCTCTTATTTTGCGCGCGAGCTGAATGACGTCACCCCCGAGATGAAGTCACTGCTGCCGCCTACAGACTCCCGCTTCCGGCCAGACCAGAGGCTGCTGGAGAACGGGCATGTAGACGAGGCGGAGAAAAAGAAGGATGAGGtggagcagcagcagagggAGCGGCGGAAGATGATGGAGAAGAAGGGAGAACAACACATCCCACGCTTCTTCAGGAAAATGGTGGATGCCACTGGCAAGGAGACCTGGTTCACCAACGGGACATACTGGAAGGTCCGCAAGGAACCGGGATTCGCCCAAATGGACAACCCGCAGCTGTGGTGAGGAGCTGGAGTGCAGCCTCCTTCCTGGACCTGAGGACTGCCAGCCAGGAGGGTGTTGTATATTTTAGACCtctatattcaaatgtatagaCTATTATAGTGGAAAAATCCAAACCTCATCAGTTGTGAAGACCTTTGGATGTCCAACTTAACTTCTTTGATGCCGAGAAATGTGCGCACACTCCATCACCCATCGCACTGATGAAATTGCTCCGTCTCGCACGGAGCAGAGatggtgtgtgagtgagagacagCCTGGGGAAGGTGTGaaagacaattttatttattttgctcatgGATCTGCCCCAGGATTCCCAGCGTTTCTCCTCCCCTGGTATCGCAGGTGGGAGCAGCACCCAGCCCACTGTGCTGAAGCTGCCTTGACCACTGCAGGCTGTCCGTCTTGAGCTGGACAGAGTTTGGAAACTATTCTGGtggagagggaggaggtgggTGGTGGCTGTAATGTACTACCCTGTCACCCACCACCACAGAGTCCCTCCCAGCTCACCCAACCTCCCTGTCGCAGCCATGAAAGGACGGGCCGCCAGTCGAGGTGAGACTGGAGTGTTTTGTTGCCCTGTTTTGGTgtcctatttttaaatgttttacagaggCTAGTATTTTACAACAAGGGATCATTTTAAGATGctgcaattttcatttttaaatgatttttatgTGTTCATTATGCAATCTAGTAGACTGAACATTTTCCTGTAATATTATCCTAAAGGTCTCTGTCAGAAcccttaattaatcaataaatgagcagttttgttttttgttttagatttttttttttttggtgggttAGGTAGTAATGCCTCCACACTGGAGTTTGCATTACAGGTCAATGTACCAGGAAACCTCTGGTGGGCTATGAACTGAAGCGCACAATGCACAATTCTGAGGGGGGTGGTGACCAGTCATCCTGTTCCCCCTCAAAGTGCTCAGTCGGCACAGTGACTGCTCACAGAGGCATATGTATTGAACTCCTGTACAGCTCTAGTGACTTGCTCAGTGTCTGCTTTGAAAAGCAGTGTGTTCTGTTGAAGCCAATTTAAGgactttttttctgaaaaataacaagtgtgtgtatataacttTAGGGAAACCGAACAGTGTAGTTTGTAATGAATtttatgtgtgcattttgttgtAACTTGTGTTCTTAAATGTAGTCTTGACCATCAATGTCGTTATCCCTTATCCAGCATGTGTGTACAAGAAATGTCCAGTAGAGGGCTCCAAATGATTTGATAAAATACACTAAACTGCCTAAAACTTATTCACCAAAGTTCACttgttttgattgtatttttgccttttctttgttttgatcaCCTGGTTCTGTAACCTCCTCTGCACACATCACATTGGGACACCTGCCCCTGTCACACATGCCTGCAAAGGGTTTCTGCATCTGTAATTGactcctgctgctgcttttcCTAATTCAGGACTCATAGTTTGGCCAAATAAAGGTTTTACCCCCCTACCTCTCACAGTTTCCAGTCACTGCCTCATTTCTGACCACATCATGTTAATATGGGGTGACGAGGTAGGTGGGGGGTGATTAAGTAGGCTTCTGCATGGAAGGGCAACTGGTACTGAGCACAATTGCATTGTTCTTCCAGCAGGTGgcagtgacattttatttttaaactaccaTACTTCCAGGATGTCCGAAGTGCAGCATCTCTCCAGGGGGTTTGTGTGTGACTTCCCTACCCTCTGTGTGGGCTGTGCTGTAAGTAGATGGACTGGAGTGCTCCAGGTTGGCGAGATTCATAGGTTCAAGTCCTGCAAAGCATTATGATTAAATGCTTTGTGAAAGGTGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016652 True 4688 mRNA 0.53 22 26872895 26886881

Neighbor

gene id symbol gene type direction distance location
AMCG00016653 NA coding downstream 33782 26833194 ~ 26839113 (-)
AMCG00016651 tbkbp1 coding downstream 50569 26816808 ~ 26822326 (-)
AMCG00016648 NA coding downstream 123833 26743584 ~ 26749062 (-)
AMCG00016649 NA coding downstream 140805 26721787 ~ 26732090 (-)
AMCG00016642 NA coding downstream 208594 26662086 ~ 26664301 (-)
AMCG00016657 NA coding upstream 1453 26888334 ~ 26891932 (-)
AMCG00016659 NA coding upstream 14495 26901376 ~ 26901744 (-)
AMCG00016656 LOC107677865 coding upstream 54099 26940980 ~ 26946564 (-)
AMCG00016658 copz2,LOC107740614,LOC107662379,LOC107585036,LOC105013247,LOC106607483 coding upstream 80529 26967410 ~ 26974651 (-)
AMCG00016667 NA coding upstream 300955 27187836 ~ 27194901 (-)
G14882 NA non-coding downstream 130557 26741085 ~ 26742338 (-)
G14832 NA non-coding downstream 349848 26522804 ~ 26523047 (-)
G14818 NA non-coding downstream 404796 26430455 ~ 26468099 (-)
G14775 NA non-coding downstream 447645 26425032 ~ 26425250 (-)
G14765 NA non-coding downstream 477470 26394932 ~ 26395425 (-)
G14943 nfe2l1,nfe2l1b,LOC107565927 non-coding upstream 92277 26979158 ~ 26983486 (-)
G14999 NA non-coding upstream 357085 27243966 ~ 27245247 (-)
G15001 hoxb5a,LOC104941372,LOC103365501,LOC108278507,LOC108413114 non-coding upstream 376832 27263713 ~ 27265603 (-)
G15016 hoxb9 non-coding upstream 409204 27296085 ~ 27308958 (-)
G15066 NA non-coding upstream 508238 27395119 ~ 27398583 (-)
AMCG00016644 NA other downstream 229402 26626707 ~ 26643493 (-)
AMCG00016643 NA other downstream 280595 26582526 ~ 26592300 (-)
G14843 NA other downstream 301254 26568669 ~ 26571641 (-)
G14816 LOC108438405,LOC108438407,LOC107666325,LOC107563033,LOC107666324,LOC107753907 other downstream 352498 26427339 ~ 26520397 (-)
AMCG00016623 NA other downstream 631505 26239082 ~ 26241390 (-)
AMCG00016662 cbx1,cbx1b,LOC108279860 other upstream 108292 26995173 ~ 27003707 (-)
AMCG00016671 hoxb6ab,hoxb6,hoxb6a,LOC105013254,LOC103045875,LOC107582892 other upstream 379006 27265887 ~ 27279334 (-)
G15026 NA other upstream 482709 27369590 ~ 27370139 (-)
G15067 NA other upstream 514795 27401676 ~ 27403922 (-)
G15076 NA other upstream 538012 27424893 ~ 27428651 (-)

Expression


Co-expression Network