AMCG00016656 (LOC107677865)


Basic Information

Item Value
gene id AMCG00016656
gene name LOC107677865
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26940980 ~ 26946564 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016656
caatgaaacaatcacaatattttgttatggaacaacaaaacagcaaccCCATTTAGCATCcgcattttttttgtataattctctctcttaaaaaaagtatatataggcaacacacacacacacacatatatctatatctatatagttTAACTATTCAGCTCCAGATTGTGTGCCACGTTACGCTACGgtgcattttgtttgcaaatCCGTCCTGTTGCGATTTCTCGGTGTGGGAACCGCTGGGCAGCTCCCTCGCTGCAACACGGAGCCCTAAACTGGTAAATAGGGCAAGCGCGACCAATGCATTTCCCCCTTCCCTTTGAACCGCATTCACGAGTCTGTCAGAGGAGCAGAAGCCGAAAAGGTCATAGACTTTGTCTGGGACTAGAGTACAGCCGTGCAATATGCCGGAGCAGCGGACAGTTTTCCTGCGCGCAAAATAAAGGATGGAGAAGAAATGAGGAGGAAAACGAAGGCGAAGCGAGTTCTCGATCGCGACAATGAAGCGGAGCAAGAGGGCTGCGAAGAGCAAGACGAGAGCGACGCGTTTGAATTTGAAAACCCCATGATGGAGCAATTCTCCGACAGTGATTCCACTCCAGAGGACTCTGACTATCTGCAGTCTCGGTCGAAAGCGGAGCTGATTGCGATGGTGTTGTGcatgcagagagagatggagagccTGAAAGAACAAATAAGGTGCCTTACAGCCTGTGGGAAACTGGCTAGAAACCTGGAGGCTCTGATTGAGAGGACCCAGGTGTGGTCGAGTGTTGACGCCAAGGCCCCGTCTCCCAGTGTGCCTGGGGCCCAGGGGGACGTGCTGATGCCCGCAGTGGTGGCGCCCTCGGCCGTCCTGAACGGGCAGTGGTTGAAGCGGGACGGCGGGGCGCAGGACGGGCAGACAGATCAGAACACTGATGCCCAGCACAACGGCCTGCCGCTTTTCCCAGAGTTCATCAGTGTGGAGCTGCTGGACCGCTGCAACACCAGTGCCACGGCTCAGAAGCTGACTAACGACCTGCTGCGCGGGCTGTACGAGCGTGACTGCCTGGCCTCCCACTCCATCTCCGGCATCATCTACAACAAGAGGGGCCAGCCCAAGCCAGCGCTGCCCGCAGACGAAGTCCAGGCCATCCTGAAAACAGTGCAATACTTCTTCCCTGGGAAGACGGACGCTGAGATCAAGGGCTACATCCGCCAGAAGCTGCAGAATGAAGCGAAGAGGCTGAGGAGGAAGCCAGCCCTCTCCGTAAAAACGGAAGAAACGACGGAACCCCCTGTGACTGACACCCGTTTACACACAGACCCCACCTCTTGGGTTGTGACAGACACGGACTCCACGCCGCACAAGGACCCCACGCAGCACACGGATGTGATGCCGCAAACGGACTCGGCGATGCACACAGACTCTCCCCCACATGAGCACCCTGGAGAAGAGTGTTGGAGTGgaagtttttaaaaaaagataaatacagaaGGAGGTGGGGGGACGGGGATGTGAACAGGGGacccatacaaaaaaaatcacagtcaGTGGAAGAGGTTGATCGTGTGCCCATAAAACCAGAGGAACGGAAAAGCGTTTCACCTTAAAATTAGGTGGAAAAAGcaaaagttaaaaacatttctaatgGGTTTAATcgaactatatatttttttagttttattttttctggacTGTCTTAATAGGAATCATAAGCGATTTAATTTCTGGTAGACAGTTGAACTTGTtcttatgatttgtattttattttattttactccgCCTTTTGGCAGCGGACCGACTGCTGTTTGTCTGTGGTCGCGAATATTTCCTTCTGCGACTGAAGGCCGATTAGAGTCAGAGATTCCCCGTCTCTCCCATCGAGGGGCAGCTGTGGTCTGTGATGCTTCCTTGACAAGGTTTAGTTTCTTTTGTATCTGAAGGAaagcacatgcacacaaaaaaaaagacaatataataaaaagtaaattgtcattttcattgacgatgtgtttttaatgtacagcTGATGTGTGTTGTATCTTTCCTGGTCCCTATTAACTAAACTTaatgttagtttttaatttaatttttttactttatactattttgttttttttaatccaaatccTGATCttactaattaaaacaaaactttctgtttttcaagaGGTGTTTCTCGATTGTTTCAGCTTTGGTTTCTCTTGTACAGTTGGGCGATTGTAAACGGGG

Function

NR:

description
PREDICTED: uncharacterized protein LOC107677865

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016656 True 2218 mRNA 0.48 6 26940980 26946564

Neighbor

gene id symbol gene type direction distance location
AMCG00016659 NA coding downstream 39236 26901376 ~ 26901744 (-)
AMCG00016657 NA coding downstream 49048 26888334 ~ 26891932 (-)
AMCG00016652 NA coding downstream 54099 26872895 ~ 26886881 (-)
AMCG00016653 NA coding downstream 101867 26833194 ~ 26839113 (-)
AMCG00016651 tbkbp1 coding downstream 118654 26816808 ~ 26822326 (-)
AMCG00016658 copz2,LOC107740614,LOC107662379,LOC107585036,LOC105013247,LOC106607483 coding upstream 20846 26967410 ~ 26974651 (-)
AMCG00016667 NA coding upstream 241272 27187836 ~ 27194901 (-)
AMCG00016664 hoxb2 coding upstream 263959 27210523 ~ 27212922 (-)
AMCG00016665 LOC105013251 coding upstream 270894 27217458 ~ 27219724 (-)
AMCG00016666 hoxb4,hoxb4ab coding upstream 300996 27247560 ~ 27247997 (-)
G14882 NA non-coding downstream 198642 26741085 ~ 26742338 (-)
G14832 NA non-coding downstream 417933 26522804 ~ 26523047 (-)
G14818 NA non-coding downstream 472881 26430455 ~ 26468099 (-)
G14775 NA non-coding downstream 515730 26425032 ~ 26425250 (-)
G14765 NA non-coding downstream 545555 26394932 ~ 26395425 (-)
G14943 nfe2l1,nfe2l1b,LOC107565927 non-coding upstream 32594 26979158 ~ 26983486 (-)
G14999 NA non-coding upstream 297402 27243966 ~ 27245247 (-)
G15001 hoxb5a,LOC104941372,LOC103365501,LOC108278507,LOC108413114 non-coding upstream 317149 27263713 ~ 27265603 (-)
G15016 hoxb9 non-coding upstream 349521 27296085 ~ 27308958 (-)
G15066 NA non-coding upstream 448555 27395119 ~ 27398583 (-)
AMCG00016644 NA other downstream 297487 26626707 ~ 26643493 (-)
AMCG00016643 NA other downstream 348680 26582526 ~ 26592300 (-)
G14843 NA other downstream 369339 26568669 ~ 26571641 (-)
G14816 LOC108438405,LOC108438407,LOC107666325,LOC107563033,LOC107666324,LOC107753907 other downstream 420583 26427339 ~ 26520397 (-)
AMCG00016623 NA other downstream 699590 26239082 ~ 26241390 (-)
AMCG00016662 cbx1,cbx1b,LOC108279860 other upstream 48609 26995173 ~ 27003707 (-)
AMCG00016671 hoxb6ab,hoxb6,hoxb6a,LOC105013254,LOC103045875,LOC107582892 other upstream 319323 27265887 ~ 27279334 (-)
G15026 NA other upstream 423026 27369590 ~ 27370139 (-)
G15067 NA other upstream 455112 27401676 ~ 27403922 (-)
G15076 NA other upstream 478329 27424893 ~ 27428651 (-)

Expression


Co-expression Network