AMCG00016657


Basic Information

Item Value
gene id AMCG00016657
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26888334 ~ 26891932 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016657
ATGTGTGTGCCAGGCTGGCTGCCCTGCACACAGACCGTGCGCCATGGATCCAAGGCCGTCACGCGTCACAGGAAGCCCATGCACTTCCTGAAGCAGAAGCTGATGGCCGTGACAGAATTCATCCCCCCGCGCCCCTCTCCCCCCGAGCGTTGCATCGTCCCACAGGCCAGCCGGACACAGGAGCATGAGAGTGGCCTGGTGGTGATCCTGCGCCGAGAGGTGGAGCAGCTGTTCCAGGACAACAAGATGATCTTGGTGGCACAGAATAACGCCATAACGGCAGAGGACATGCTGCTGCTCAGGCACAAGCTGCACCGGCTCAACGTCACAGTCAAGTTCTACCCCAATCAGGTACGCACCCCTATTCCCGGGGAGCGCCAGCATGCTTTCAACGGGCCTGTGGAGATCTCGCCCCAGATGGAAGTGGAGCAGAAACAGGTTAAGAGCCACTGGGTGATGTCATTGTGTTCCGGAACACTGCTGGGCCGCAGCAGAGGGGTGATGAGGTCATACCTGTCGGGATCCAAGTTCCAGAACCTGGCCCCTCTGTTCATTGCCCAGAACGTACTACTGGTCAGCAAGGAGCCCAAAGTGAAGGAGGTGCTACGGTGTCTGAGAACCACACCACAGATGGTGCTGCTGGGAGGCTGTATCGAGGACACCCTGCTGAGTCTGCAGGGGGTACACAGCTACTCCAGACTGCCCTCCCTGGCCATCCTACAGGGGCAAGTGGTGAGCGGCCTGACCCTGATGACCTCTCAGACGGCCGCCCTGCTGCACCGCCATCCCACCCACCTCTCCGCTCTGCTGCAGCAGTACGTGAAGCAGCAGGCAGAGGGCAGCAGCGATGGCAGCACTCAGGCCCAGCAGGCAGCCTCTGCGTAGGCACTGCAAGAAGGCAgggaataataatcatattgaaCATCGGTGCTGCCCTGCCTGCCTCCTGAGGTGTCATTTGGGGACTGGACTTGTTATCTGTGAATGTGGAGGGAGTGAAGAACGTgaccaacaaaaacaacacggaaagaaaaaaaaaatccacagctGAGTAAACAATGGAAACTTCCTATTTCCTCTTCATTTCAGTATTCCAGTTCATCTGCTCTGTTTATGAtgattctttgttttaatgtcttCAACGCCAAGTACATTTATGACGAGGGCTGTGTTGCCCGGGACTGTATCTCCATCAGCACAGCCTGGGCTTccagagggggagaggggaagagggggGTATGCAAACatagacaggcaggcagagtAGAGATGGAAAGATCTTACACAGGCAGTCGGTGTGATGGTgacactgtttgtaaataaagtgaCTTACATGTGA

Function

GO:

id name namespace
GO:0005840 ribosome cellular_component
GO:0005739 mitochondrion cellular_component

KEGG:

id description
K02864 RP-L10, MRPL10, rplJ; large subunit ribosomal protein L10

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016657 True 1339 mRNA 0.56 5 26888334 26891932

Neighbor

gene id symbol gene type direction distance location
AMCG00016652 NA coding downstream 1453 26872895 ~ 26886881 (-)
AMCG00016653 NA coding downstream 49221 26833194 ~ 26839113 (-)
AMCG00016651 tbkbp1 coding downstream 66008 26816808 ~ 26822326 (-)
AMCG00016648 NA coding downstream 139272 26743584 ~ 26749062 (-)
AMCG00016649 NA coding downstream 156244 26721787 ~ 26732090 (-)
AMCG00016659 NA coding upstream 9444 26901376 ~ 26901744 (-)
AMCG00016656 LOC107677865 coding upstream 49048 26940980 ~ 26946564 (-)
AMCG00016658 copz2,LOC107740614,LOC107662379,LOC107585036,LOC105013247,LOC106607483 coding upstream 75478 26967410 ~ 26974651 (-)
AMCG00016667 NA coding upstream 295904 27187836 ~ 27194901 (-)
AMCG00016664 hoxb2 coding upstream 318591 27210523 ~ 27212922 (-)
G14882 NA non-coding downstream 145996 26741085 ~ 26742338 (-)
G14832 NA non-coding downstream 365287 26522804 ~ 26523047 (-)
G14818 NA non-coding downstream 420235 26430455 ~ 26468099 (-)
G14775 NA non-coding downstream 463084 26425032 ~ 26425250 (-)
G14765 NA non-coding downstream 492909 26394932 ~ 26395425 (-)
G14943 nfe2l1,nfe2l1b,LOC107565927 non-coding upstream 87226 26979158 ~ 26983486 (-)
G14999 NA non-coding upstream 352034 27243966 ~ 27245247 (-)
G15001 hoxb5a,LOC104941372,LOC103365501,LOC108278507,LOC108413114 non-coding upstream 371781 27263713 ~ 27265603 (-)
G15016 hoxb9 non-coding upstream 404153 27296085 ~ 27308958 (-)
G15066 NA non-coding upstream 503187 27395119 ~ 27398583 (-)
AMCG00016644 NA other downstream 244841 26626707 ~ 26643493 (-)
AMCG00016643 NA other downstream 296034 26582526 ~ 26592300 (-)
G14843 NA other downstream 316693 26568669 ~ 26571641 (-)
G14816 LOC108438405,LOC108438407,LOC107666325,LOC107563033,LOC107666324,LOC107753907 other downstream 367937 26427339 ~ 26520397 (-)
AMCG00016623 NA other downstream 646944 26239082 ~ 26241390 (-)
AMCG00016662 cbx1,cbx1b,LOC108279860 other upstream 103241 26995173 ~ 27003707 (-)
AMCG00016671 hoxb6ab,hoxb6,hoxb6a,LOC105013254,LOC103045875,LOC107582892 other upstream 373955 27265887 ~ 27279334 (-)
G15026 NA other upstream 477658 27369590 ~ 27370139 (-)
G15067 NA other upstream 509744 27401676 ~ 27403922 (-)
G15076 NA other upstream 532961 27424893 ~ 27428651 (-)

Expression


Co-expression Network