AMCG00016658 (copz2,LOC107740614,LOC107662379,LOC107585036,LOC105013247,LOC106607483)


Basic Information

Item Value
gene id AMCG00016658
gene name copz2,LOC107740614,LOC107662379,LOC107585036,LOC105013247,LOC106607483
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26967410 ~ 26974651 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016658
GCCATTGCGGCTCCGGGCGTGGAGCTGGGCTGGCGTTCCCAGGCCGGGGAGAGCCCGAGCCGCAATGGCAAACGCTGCAGTGCAGTTTCCCTAGGTCCTGCTTGGGTTTGGGCAGGAGGTCCCGCCTACCTGTGAGTCAGAGGGAACTGCGAAGTCTATTAAAATGACAGATCAGCCCTGTCCACGTCAACACCGAAATATACCACCATGGAATCTATGGCTCTGGAGCCGTCCCTGTACACCGTGAAGGCGATCTTCATCCTGGACAGCGATGGAAACCGACTCCTCTCCAAGTACTATGACACAGAGCTGTACCCCTCCATGAAAGAGCAGAAGAATTTTGAAAGGAACGTTTTCAACAAGACTTCCAAGACTGACAgtgagATTGCGTTTTTGGAGGGATTGACCATAGTTTATAAAAGCAGCATTGACATCTTCTTCTATGTGGTTGGCAGTGCTCAGGAAAATGAGCTGATGCTGATGGCGGTTCTGAACTGCCTGTTTGACTCGCTCAGCCAGATATTGCGGAAGAATGTGGAGAAGAGGAGTCTGCTGGACAACATGGATGGAGCGTTCCTCGTGGTGGACGAGATCATTGAcggaggGGTGATTCTGGAGAGCGACCCCCTGCAGGTCATTCAGAAGGTCAATTTCAGGGCAGAAGACAGCCCACTGTCGGAGCAGAGTGTGGCACAGTCGGCGAAGGAACAGATCAAGTGGTCGATATTAAAATGA

Function

symbol description
copz2 Predicted to be involved in intra-Golgi vesicle-mediated transport; intracellular protein transport; and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in Golgi membrane and cytoplasmic vesicle. Predicted to be part of COPI vesicle coat. Orthologous to human COPZ2 (COPI coat complex subunit zeta 2).

NR:

description
PREDICTED: coatomer subunit zeta-1-like isoform X3

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K20472 COPZ, RET3; coatomer subunit zeta

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016658 True 735 mRNA 0.53 9 26967410 26974651

Neighbor

gene id symbol gene type direction distance location
AMCG00016656 LOC107677865 coding downstream 20846 26940980 ~ 26946564 (-)
AMCG00016659 NA coding downstream 65666 26901376 ~ 26901744 (-)
AMCG00016657 NA coding downstream 75478 26888334 ~ 26891932 (-)
AMCG00016652 NA coding downstream 80529 26872895 ~ 26886881 (-)
AMCG00016653 NA coding downstream 128297 26833194 ~ 26839113 (-)
AMCG00016667 NA coding upstream 213185 27187836 ~ 27194901 (-)
AMCG00016664 hoxb2 coding upstream 235872 27210523 ~ 27212922 (-)
AMCG00016665 LOC105013251 coding upstream 242807 27217458 ~ 27219724 (-)
AMCG00016666 hoxb4,hoxb4ab coding upstream 272909 27247560 ~ 27247997 (-)
AMCG00016674 NA coding upstream 311562 27286213 ~ 27286461 (-)
G14882 NA non-coding downstream 225072 26741085 ~ 26742338 (-)
G14832 NA non-coding downstream 444363 26522804 ~ 26523047 (-)
G14818 NA non-coding downstream 499311 26430455 ~ 26468099 (-)
G14775 NA non-coding downstream 542160 26425032 ~ 26425250 (-)
G14765 NA non-coding downstream 571985 26394932 ~ 26395425 (-)
G14943 nfe2l1,nfe2l1b,LOC107565927 non-coding upstream 4507 26979158 ~ 26983486 (-)
G14999 NA non-coding upstream 269315 27243966 ~ 27245247 (-)
G15001 hoxb5a,LOC104941372,LOC103365501,LOC108278507,LOC108413114 non-coding upstream 289062 27263713 ~ 27265603 (-)
G15016 hoxb9 non-coding upstream 321434 27296085 ~ 27308958 (-)
G15066 NA non-coding upstream 420468 27395119 ~ 27398583 (-)
AMCG00016644 NA other downstream 323917 26626707 ~ 26643493 (-)
AMCG00016643 NA other downstream 375110 26582526 ~ 26592300 (-)
G14843 NA other downstream 395769 26568669 ~ 26571641 (-)
G14816 LOC108438405,LOC108438407,LOC107666325,LOC107563033,LOC107666324,LOC107753907 other downstream 447013 26427339 ~ 26520397 (-)
AMCG00016623 NA other downstream 726020 26239082 ~ 26241390 (-)
AMCG00016662 cbx1,cbx1b,LOC108279860 other upstream 20522 26995173 ~ 27003707 (-)
AMCG00016671 hoxb6ab,hoxb6,hoxb6a,LOC105013254,LOC103045875,LOC107582892 other upstream 291236 27265887 ~ 27279334 (-)
G15026 NA other upstream 394939 27369590 ~ 27370139 (-)
G15067 NA other upstream 427025 27401676 ~ 27403922 (-)
G15076 NA other upstream 450242 27424893 ~ 27428651 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000034_01323481_01381800 COPZ2 coding CI01000034 null 1323378 ~ 1383472 (-)