AMCG00016660


Basic Information

Item Value
gene id AMCG00016660
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26999267 ~ 27009741 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016660
cagcACAGCGTTATCAGGGGGCCCACGGGCCGGACAAGTGGAACGAGGGAGCTTAAGGGGGGAGGCTACTGGATGATCCACAGAGAGGGCTGAGGTGTGGGGATGGGctgcctacacacacacacacacacaagcagggaAACAGGCGAGTGTAACACTAGGCTATATATAAGTGGCTGTGTATTCCTGGGCCAGTTTGATGGACTGAGCTGCCTCACTCCAGCCTGATACAAGCTGCAGTGACAGCAAACACAGCAGTCCCTTAATGTCGCTGTGTGCATCACGTTTCTTGTCACTGTTATTCTGCAGCCTAACTGTAGCTGTAGGAACTTGCTGTAGCCGTAGCTTTAACTTCGACGGCCGTGGGCTCCTATGCCTGCACTTCACGGGCACATGCTGGTGCTTTTGAAGCCTGGTACCTTGTACTGCATTAGCATagacagacacaaaataaaatgatctttAAAATACTAATGAAtcgtgtttttgtatttttgtctttgagcgcgcgtgcgtgcgtgcgtgcgtgtgtgtgtgtgtgtttgcgatTCAGCCGTGCAGCAGCGAAGCAGTGGAAAGGGGCCCGGCAAGGGAAGGGTAACCCGAGGCCTGTGTGTGACACCAAGTCTTTGTgcatctctttcttttttttttttaaattcatgggttaagaaaagaaaaaacaaaaactgaaagaaacataTCATGTTGATAGTAAAGTGCAGGACAGACTTGTATGGGTACAGCATACTAAGCACAGCAAATACAATGCAAGATTTAACACGTCAACATGCACTATGGAGTCTTTCCAACTTGCAAAATGtgacccccacccacccccggGTCCTATTGAAATCAGCACCctgacagtgcagtgcaggaggACTACATGCCAGGCTGCACAGGAAGCTGTGGTCTGAGACCTGACGCTTCCAGTACAATCTGGAACGGGTGCGATGCCAATTCAAAACACAGAATAAGTGAGTACATACACTAATCAAGCTGCTTCAGATCGCATATgaaacacgcacacactctctctgtaCTTCTGTAGTCTAGTCTGAAGTGAAGCACTGTGGGTAGCCCCCTCCAAGTGCCCCAAAGTGACTGCACACTGCAGACAACTCTGTGCCTGGTTTTCCCCTGCACTTTGCCAGGGGCTTTTTAAAGCAAACCAATGGCTGTGACTAATAAAGACACCCTCTGTCACCtactgacaccctgacacacagTCAGGGGGCTGCCCAAAATAGGCTTTTCTCAGGGACCTTCACAAGTAAAATGTCTAAAAGCACAGCAGGAATTCATGAGGCATCTTGGTCTGCCACTtgcaagggaaaaaaatatgaataaataaaacaaatcaatgcatgaCAAATACACACACCGCAAAACTCACAAACACATGTATAATGCCTACGTctatcataaaaaaacatgggCACAAATCTAAATAAAGATAGACATGAATAGGATGTGCATAAGAGCAGTGCTTTGCCAGGTAAAACTCAGCTGCTCCCCTTTCCAAGCAGTTTTCTGTAACCTTCATCAAACCCCCCGGCCACACACACTCATGCCCCCACTGACACCCAACAACATTCAGCAGACAAAAAGCAGTGCATTGTAGAGTGTGCATAGAAGAAACGTTTCTGTGACCTGCTTTAATAGTGGGAGCATCGTAACTGGGCTCTGAAGGCTGACTCATGCTCGTCGGGAGGAGGCACTCGAACGAGCGCGGTCCTTTTCAACGTCAACAGAGCTAAACAGGaaaaagaaaagaaaccgcGCGGCCCGGAGAACAGCAGATAAAAGTTGCCGCGGTGTAACAGAGCCCCCGTCCTGTGCTTGAGCGCTGGGAGTTTGTGTTAGTGGGTATTTTTGAATGCGTGGCTCAATTCGCGCTGGGTCTCTTCCCGTCGCCGCGTTTCTCTCACTCTGCTCTCCAGACAAAAGGCACCCAGCGCCTCGGCAGCCCGCTAGCCCGAACTGCGCACTGCGCAAGCGCACCACCGCGGCGTCCCGCGAAGGTTGCCGGGAAATGTATTCTCTtcgattgtattattattacggCTGGGATTTACGTAGAGATAAATCGGTGTCCAGACGCTGTTTCCaccaacataaaacaaacaacgcatatttatttttgattgtaaTGATTTATACTTTATGCTACATGGGtagcactactactactaaaataataaaaagaatgaaTACATAGAAACTACAATAAGACAAAATGCTAAAACAACACACGATAAACTCCAACACCCAGCAGGCCTCACTCTTCCACATGCGGAAATGAGATCGGACTTCCCAGTGGAAAGAGCCCAGAAGTGCTCGCCGAGCTGAAGTTTGGCAGACCGAGGGAGGTAACGGACGGGCTGCACTAAAACACCCGGTTtaacattactttaaaacaacaaaacctcaGTAAGCATCCATACTTTTCTACTGTGCTGACCTGGGAGCGCACAGGGAGACGCAACATATTTGTGGTCAAAGCACTGGAGACGCATTGTGTTGGATTACTTTGACAGATGGCAGGGAGAAAGACGCGCCTGTCTTAGGACGATGAGGAGTCAGGAAGAAGAGGAGTTCATCGCGGTCAGGGTTCAGGATCCACGGGTCCAGAGTGAGGGGTCCTGGAACTCATACGTGGACTTTAAAATATTCCTCCATACTAACAGCAAGGCCTTCACTGCCAAGACGTCGTGTGTGCGGCGGCGCTACAGCGAGTTCGTGTGGCTGAGGAAGCAGCTGCAGAAGAACGCCGGCCTGGTGCCGGTGCCGGAGCTGCCAGTCAAGACCCCCTTCTTCTCGCTGGCCAATGAGGACTTCATCGAGCGACGCAGACAGGGCCTGCAGCAGTTCCTGGACAAGCTCCTGCACATGACGGTGTTCCTGTCGGACAGCCAGCTGCACATGTTCCTGCAGACGCAGCTGCGCCCCGCCCACATCGAGCAGTGCGTCCAGGGACACACCCCCTACTCCGTGACGGACGCCATCCTCAGCTACGCCTCCTCCAATCGGGGCTGGGCtcaggaggaggagggcgggACCGCCGAGGCCAGCCTCGTTCCCGTGCCCTACGAATCGGCAGACAGCCCCACCCCTCAGCTCCCTCTTGCCCAGTGTGAATGCCGTTTCGAGGTCGGAGGGCCAGAGAACGACACCCACAGTGAATCTGACAGCCCGTCGGAAAGCAAGGACTGAGTGACGTCATGCCAGCCATCGGAACATGACAGCAGCCGCGTCTATGATAAATGTCGAActtgaagagagaaaaaaactaaacaactaCCCCcccaccatacacacacacacatccataaaaacaacaactacaaacaAAACTTTAAGGTGGAGGACTAAGCCACTATTTTTTCCTGAATTCTACAGCAGATTTGGACCTCTGGTTGGGGGAGGGGACATGCTATGAACTAACAAACGCCCCTGTGTGTCAGTGGCCAGCTCACAGGTTCTTCTGGGTTGACATTTAGACTACACAGCACTCAGCAGGAATATGAAGGGAATCGAAGCCTCCCGTGACTCTGGGGTACGGGGGAAACGCTGGAGCCACAGAAGGGCCCTATCTACCTCTGGGAAAACAGGGCTCTTGGAAACAGTCGCCACATTTATCTAAACggcattagagagagagagaaaaatatatatataaaggtatCGGCATGAAACGGACAGTATAGTGAAACACTGCATGGAAGCTTTTGATTTTGGGTGCAGAAAGTGACAGTTGAGTGGCTCGCTCGCTGGCCTCTAATGAGACGCTCCTCTCCAGCTTCGAGTGCAGCCAGCCTcaccccctgccctgccctcACCGCCCCAGCACTCACTACAGCACTGCCTCCTACTGGCATTGCTTCTTACTGGGGGATTAGTGCTTTACTgcttcaaattatttattcaattgtaTTGTCTCCAGTTGGGACTAAAGACAGGTGGATGTTGCTCTTACTAAGCAGGAggtttattaatgtgttttagcTCCAGTGCAAAATAGCATCTTTAGTATCCAGATAGCGTGCAGTTAAAACAACgagaatgatgatgataataaggagaaaaataaagagggaaaaaagtgaaaaggaaaTCTATAGCTAGCTACCTGGGTAATCTTCAGGACACACAGGGAAACACTGGGAACTTTACCACAGGGTGGTTGTGTTGGACTGTTCCCACAATAGTGAGTCTATACCGCAGTGTGAAGGGTTCAAAGCCCCTGTATGCCattgtggaaataaaatgttggctCTCGCAGGGTGTGAGGACCAGAGAGAGAAGGTGGCCGTGTCAGTGTTCATGGCAGCAGGCCTCACTCGGGCACCGCGAGAGCCAGCCCGCGACACTACAGCACTCCCAGGCTTCTGCACGAGGTCAGCATCGCCGGTGCACTCgcattatttatattgatgttGGTATCTTGTTTGTGATCTTGTAAATTGATGatgtcacagtttgttttgtcCATAAACTCGCCTTACGCACACCGATTCACTGAAGTGGTTCCTGTTATTtgcagtaaacaaaaaaaataaggtaGTGAAACGCTGCCCAATCATCACACTTTACAGCCTTAGACTGGGGCACAgtttttctctgtctgtctatgtatGTCTGTCTAACAAGAACTGAGAAGAGTCTCTCCCAATGTGGAAGCGCGGCAGAGGTTATGCACAGACCAAACATGCTCAAAGGTAGTGGTGAGCCCTCACTCCACCCCCGTCCCCTCTGGATTCTGGCATTGCTCCCCCCACAGTGTCAGTCGTGCTCCGCGCTTTCCTTATTGAgccaaaaa

Function

GO:

id name namespace
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
K17924 SNX10_11; sorting nexin-10/11

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016660 True 4825 mRNA 0.50 8 26999267 27009741

Neighbor

gene id symbol gene type direction distance location
AMCG00016661 nfe2l1 coding upstream 8954 26977195 ~ 26990313 (+)
AMCG00016655 NA coding upstream 80499 26911968 ~ 26918768 (+)
AMCG00016654 NA coding upstream 101733 26893279 ~ 26897534 (+)
AMCG00016650 NA coding upstream 130086 26857718 ~ 26869181 (+)
AMCG00016647 NA coding upstream 299066 26683642 ~ 26700201 (+)
AMCG00016668 NA coding downstream 349037 27358778 ~ 27364948 (+)
AMCG00016677 NA coding downstream 384217 27393958 ~ 27403922 (+)
AMCG00016680 NA coding downstream 395667 27405408 ~ 27405728 (+)
AMCG00016676 atp5g1,LOC107740625,LOC106600830 coding downstream 396990 27406731 ~ 27409921 (+)
AMCG00016678 NA coding downstream 404469 27414210 ~ 27416010 (+)
G14803 NA non-coding upstream 283466 26715569 ~ 26715801 (+)
G14802 NA non-coding upstream 286138 26712231 ~ 26713129 (+)
G14800 NA non-coding upstream 294063 26704997 ~ 26705204 (+)
G14791 NA non-coding upstream 341949 26589606 ~ 26657318 (+)
G14992 NA non-coding downstream 253149 27262890 ~ 27274297 (+)
G15005 hoxb7a,hxb7a,hoxb7,hoxb7ab non-coding downstream 271683 27281424 ~ 27282569 (+)
G15025 NA non-coding downstream 359848 27369589 ~ 27370138 (+)
G15224 NA non-coding downstream 1107177 28116918 ~ 28117190 (+)
G15226 NA non-coding downstream 1108802 28118543 ~ 28119649 (+)
AMCG00016663 NA other upstream 5319 26966297 ~ 26993948 (+)
AMCG00016635 NA other upstream 341842 26600093 ~ 26657425 (+)
AMCG00016638 krt222 other upstream 451055 26527319 ~ 26548212 (+)
AMCG00016640 NA other upstream 500025 26489938 ~ 26499242 (+)
AMCG00016633 NA other upstream 565611 26427339 ~ 26433656 (+)
AMCG00016683 NA other downstream 532745 27542486 ~ 27553120 (+)
AMCG00016691 NA other downstream 578738 27588479 ~ 27604879 (+)
AMCG00016690 NA other downstream 603364 27613105 ~ 27626090 (+)
AMCG00016699 LOC106607176 other downstream 767686 27777427 ~ 27799126 (+)
AMCG00016705 NA other downstream 819527 27829268 ~ 27833537 (+)

Expression


Co-expression Network