AMCG00016662 (cbx1,cbx1b,LOC108279860)


Basic Information

Item Value
gene id AMCG00016662
gene name cbx1,cbx1b,LOC108279860
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26995173 ~ 27003707 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016662
gggcagacaggagagagactgAATCAAAGCGAGCCAGCGCCGGGACCTGGCGAAatgcactcactcactcactcactcactcactcacacacgcatgcatgcatgcatgacATTGCAGCGCTACATTTACTCTAACAATAGCGGGTCGTGGTAGGCTGTTGCATACGCCGCTGTCAGCAAGATCTCGttcaaaaaatgtgtgtgttggggggggcgGGGATATTACTAGAATTTACTCGATGTTTTTCAGTTCGATTCAGTCAGAACATGATGCTGatgctgatgctgctgctgatgatgctCTTCCAGGCGCTGATGCACACATgcaggcgtgtgtgtgtattaacgGTGTTGTGTTGTAAGTTGGTGCGTTTTGAACACGTCCGCGATCTGGCCAGCCTGCAGCTTTATTTGTAGCTGCCGGGCAGGCGGGGGTTAAACCCGCTTGACTGGGAGTCTGTAGTCACCGGCCACATCACCGAGCAGGCGTGCATGGAGGAGCACTGTTTATGAATTAATGTCTCTGCGGTCAGACGTGCTCGCCATCATGGGTGTTGATTGAATGGCGAGTTGTGTTGAGCTGGTGTGTTTCCTGTGATCGCTGCCTTATTAATAACACGCTTTGCTGCTGTTGCATGATGTGGTGTTaagagaggagggagggcagTCTTGTTCACTTGCAGATTTCGTGCATCGTAGTCTATAGAGGGAACTGCATGCTGCTTTTACTAAGAGAGAATAATGTGAAGAattgtttcaatacatttaaccCGTTAATACTTTGCATAAAGAGGTCTgcctttaaaataatgcatcattttaaaatactctggTTGAGAAACGTGTTATTGGGATGTTTTCGGGTTTATCGTGGAGGCTGTAGTTTCAGTCCTGTAATGCGGTGCTATTGTTGTACTGCGTTGTTGTCGAGAATTGACACATTGTTGCCATTCAGACCTGAGGCAGATGCATCACAAGAGTGCGTATTTCTTCAGTttcaaatgtgacatttttgaATGAGCTCCGTGCATCACACAAGTGAAGTCGGGTGTCAGTCAGGATGCTTGATTTGAGCTGGACGTGATTAAAGCATTAAACACACAGTTGCTTTTCTGTCAGTTGCAGCGCTGGGGCGACGCGGTCCCCTGTGCCGTCGTGTGCGCAGGGCGGCCCGGGCTCAGGGGGCAGTGTAGCCCGGGAGAGAGACCTGTTTACCTCCCCTCTCCTCACACGGCCCCAGTCCGCTGAACCATCGGCCATTGCTGCGAGAATTAACCTTGTGGGTTCCGTCAtgacaataaacaaaatgataaatatgTTGAATAGATTGCTCACTGCTGTGATTGGAATGATCTTAATgagtgtaataataatcataaggAAGCATAACAGTATTAGTACTCAGCAGCCCCAGTGTCAGAGCTGTTCAGAGGACATGCCCCCTGTACCCCACAGAGCAGGAAGCAGAATGACCCCAGTGGCTGCCAGTGACGCACCTCCTGCAcagcattgttgttgtttttgctgtttttaagcCTGCAGGGGCCCTGGAGCTAAACTGACTGATCTGCATTGAGTGTGAAACTGAATACAAACCAACAAAGTTACACACATAGTGGGGAAAAGAGGCTAGACTGTATTCTCCAGCTGCTACTACTGCTTTGATGTCCTCTAAAGGAATCGGTGTGTCGAAAGACAGCCAAGGGATACGGCATGCCTGCTGATACAGTGAGCGAGGGtttaacacactcctaccacgcAGTGTCTAACACTCCTTAACACACTGCCCATTCAGAGTCGTTCTTTAATGCACATGGGCTAGTCCCGCTCCAGGCCCCGTGTGCGAACCGGCAGGATCGTCCGGCCTGCACGGGGGAAAACGTTCAGACTGCTCTTGCACAGCAGCTGCCTTCAACATGGGCTGCAGCCCTCCGCCGGTACAGCAGTCTGTACAGGTGATCCAGGAGAGCACGGCATGTGATATCACACTAaccatgtgtgcgtgtgcaagGGTAAACTCTGGGTCTAACCTCGTGCAGTCCAGGTTCGGTGTGCGTGCCACAGACTCTGACACTGGTCTGCTAATGGGTCCACCTACTGTGCAGTGGAGAGCTGTACCTGCTTTGCCCTGTGATGCCATGTGTTTCAAGTTCTTCCTTTAACCCCTGTGATTTCTTTCCCCCTGCCACGTGATTCATGACCCACTGACCTTTCACCCTGTTTAGCTCTGTTGACGTTGAAAAGGACCGCGCTCGTTCGAGTGCCTCCTCCCGACGAGCATGAGTCAGCCTTCAGAGCCCAGTTACGATGCTCCCACTATTAAAGCAGCCCCACAGACCGAATCCAAGCTGGCGTCCACAGCGGGGAAGAAGCAGAACAAGAAGAAGgtggaggagctgctggaggaggaggaggaggagtatgTGGTAGAGAAGGTGCTGGACCGGCGGGTGGTCAAGGGGAAGGTGGAGTACCTGCTGAAGTGGAAGGGCTTCTCTGACGAGGACAATACCTGGGAGCCAGAGGAGAACCTGGACTGCCCAGACCTGATCGCCGAGTTCCTGCAGTCCCAGAAAACTGCACACGAGACGGAGAAGGCCGAGTCGGGCGGCAAGAGGAAGGGGGAGTCTGACAGCGAGGCAGCCGGGGAGGAGAGCCGGCAGAAGAAGAGGAAAGAAGagtcagagAAACCCAGAGGCTTTGCCCGAGGCCTGGAGCCTGAGAGGATCATCGGAGCGACCGACTCCAGTGGGGAGCTGATGTTTCTGATGAAGTGGAAAAATTCAGACGAGGCAGACCTGGTCCCGGCGAAGGAGGCGAACGAGAAGTGCCCCCAGGTGGTGATCTCCTTCTACGAGGAGCGGCTGACGTGGCACTCGTACCCGTCTGAGGAGGAggacaagaaagaggacaagaACTAGCCCGGCGGGACAGGGGAGGAGAGAcgccttttgttttaatttttttgttttttcgcTGCTGTCGTCTTGcgttttttttacaaaactggACTGAGGAGAAGGAGGTGGTCTCTCTCGCacccttcctccccctctccctccccctctctgtctcgctGACCAGTTGAGGAGTGGGAGCatgtgaggggagggagggggcagggatGGGTTCTGGGTGATCCTTGGCAGGACTGGCAGCCAGCAAGACACTTGGAAGCAAAGACTTTTAttctcctgccccccccccc
>TU18574
CGCAGTTCGGGCTAGCGGGCTGCCGAGGCGCTGGGTGCCTTTTGTCTGGAGAGCAGAGTGAGAGAAACGCGGCGACGGGAAGAGACCCAGCGCGAATTGAGCCACGCATTCAAAAATACCCACTAACACAAACTCCCAGCGCTCAAGCACAGGACGGGGGCTCTGTTACACCGCGGCAACTTTTATCTGCTGTTCTCCGGGCCGCgcggtttcttttctttttcggAAAGCCCCACAGACCGAATCCAAGCTGGCGTCCACAGCGGGGAAGAAGCAGAACAAGAAGAAGgtggaggagctgctggaggaggaggaggaggagtatgTGGTAGAGAAGGTGCTGGACCGGCGGGTGGTCAAGGGGAAGGTGGAGTACCTGCTGAAGTGGAAGGGCTTCTCTGACGAGGACAATACCTGGGAGCCAGAGGAGAACCTGGACTGCCCAGACCTGATCGCCGAGTTCCTGCAGTCCCAGAAAACTGCACACGAGACGGAGAAGGCCGAGTCGGGCGGCAAGAGGAAGGGGGAGTCTGACAGCGAGGCAGCCGGGGAGGAGAGCCGGCAGAAGAAGAGGAAAGAAGagtcagagAAACCCAGAGGCTTTGCCCGAGGCCTGGAGCCTGAGAGGATCATCGGAGCGACCGACTCCAGTGGGGAGCTGATGTTTCTGATGAAGTGGAAAAATTCAGACGAGGCAGACCTGGTCCCGGCGAAGGAGGCGAACGAGAAGTGCCCCCAGGTGGTGATCTCCTTCTACGAGGAGCGGCTGACGTGGCACTCGTACCCGTCTGAGGAGGAggacaagaaagaggacaagaACTAGCCCGGCGGGACAGGGGAGGAGAGAcgccttttgttttaatttttttgttttttcgcTGCTGTCGTCTTGcgttttttttacaaaactggACTGAGGAGAAGGAGGTGGTCTCTCTCGCacccttcctccccctctccctccccctctctgtctcgctGACCAGTTGAGGAGTGGGAGCatgtgaggggagggagggggcagggatGGGTTCTGGGTGATCCTTGGCAGGACTGGCAGCCAGCAAGACACTTGGAAGCAAAGACTTTTAttctcctgccccccccccccccccccccccccccccccccgaaacCCTTCTCCTTGAGACAGAGAGGAGCAGAAAAACTTTGATCAGATACCCAAcctggagagaaaaagaaacaaggaaaaGAAAGCAGTATGCCCTTTTCTGCGCTGGCCAGCCTGTGTGCGGCAGTCTCCCACTGGCGTATTTATATAGAAGCGTACGTGTCTACAGCCAACGACTGAAGTGAACCCAAGCTGGGAGGAGAGGGTCCAGGGTGCTGGTCGGCAGTGCGGCCGCCTGGGGACGTTATCAAAAATGAAAGTCAGAAGTCCAGCAGCCGCTTACGTAGCAGGGGTGGGAGAGTGGGGGGAAGCAGCCGCGAATATCGAGCACATTAGGTATGCATTTGTTCATGCAAACTGATGTACAGTTCTCACTCCACTGGCCTGGTTATTGCTCAACATTattatatactgtgtatatatatatatatattaatatatatagagattaaaatgaaatagaaatgttaaaataagaGCGGATACAAAAATTCTGCAGAAGCCTAGGACCTTGTGAGTAAGAGTCCTTCGAGCAGTGCGCAGACGCTCGAGTGGCACCGCCCGGGGGCCGCGCTCTAGAACAGGTATCTGGATCCTCGGCCGGCCTGGTGTCTGTCCAGAAGAGGACCGGAAGTGCTGCGAGTGTGGTTTTATTGTTATTCGGAGGGTTTTTGAAGCGTGAAGCCGGGAGGATGAGTTGTGCAGCAGGGCAGTGGGgagtgtatgtgttttgtttcgGGGGGGGATGTGAGATGTGAAGCAGCTCCCGCCTCCCTGTCCTGCTGTCGCCCACAGCACGCCAGCTCCACCGTCCTGCCCCGGCGTGCCAAGCCACCGGAAAAGTGGATACTGCGTTTTACTTTTCTTATGTATGTTTTTACGTTTTCTCTCGTTTAAATTACAACCTGAGATCAAGTTCATCCGATTTTAAGATAAACGTTTTT

Function

symbol description
cbx1b Predicted to be located in nucleus. Orthologous to human CBX1 (chromobox 1).
cbx1 Enables histone methyltransferase binding activity. Involved in cellular response to DNA damage stimulus. Located in chromosome; nucleus; and spindle. Colocalizes with chromosome, telomeric region. Biomarker of prostate cancer.

NR:

description
PREDICTED: chromobox protein homolog 1

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K11585 CBX1, HP1B, SWI6; chromobox protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016662 True 3208 mRNA 0.52 5 26996139 27003250
TU18574 False 2076 lncRNA 0.55 5 26995173 27003707

Neighbor

gene id symbol gene type direction distance location
AMCG00016658 copz2,LOC107740614,LOC107662379,LOC107585036,LOC105013247,LOC106607483 coding downstream 20522 26967410 ~ 26974651 (-)
AMCG00016656 LOC107677865 coding downstream 48609 26940980 ~ 26946564 (-)
AMCG00016659 NA coding downstream 93429 26901376 ~ 26901744 (-)
AMCG00016657 NA coding downstream 103241 26888334 ~ 26891932 (-)
AMCG00016652 NA coding downstream 108292 26872895 ~ 26886881 (-)
AMCG00016667 NA coding upstream 184129 27187836 ~ 27194901 (-)
AMCG00016664 hoxb2 coding upstream 206816 27210523 ~ 27212922 (-)
AMCG00016665 LOC105013251 coding upstream 213751 27217458 ~ 27219724 (-)
AMCG00016666 hoxb4,hoxb4ab coding upstream 243853 27247560 ~ 27247997 (-)
AMCG00016674 NA coding upstream 282506 27286213 ~ 27286461 (-)
G14943 nfe2l1,nfe2l1b,LOC107565927 non-coding downstream 11687 26979158 ~ 26983486 (-)
G14882 NA non-coding downstream 252835 26741085 ~ 26742338 (-)
G14832 NA non-coding downstream 472126 26522804 ~ 26523047 (-)
G14818 NA non-coding downstream 527074 26430455 ~ 26468099 (-)
G14775 NA non-coding downstream 569923 26425032 ~ 26425250 (-)
G14999 NA non-coding upstream 240259 27243966 ~ 27245247 (-)
G15001 hoxb5a,LOC104941372,LOC103365501,LOC108278507,LOC108413114 non-coding upstream 260006 27263713 ~ 27265603 (-)
G15016 hoxb9 non-coding upstream 292378 27296085 ~ 27308958 (-)
G15066 NA non-coding upstream 391412 27395119 ~ 27398583 (-)
G15071 NA non-coding upstream 409293 27413000 ~ 27413229 (-)
AMCG00016644 NA other downstream 351680 26626707 ~ 26643493 (-)
AMCG00016643 NA other downstream 402873 26582526 ~ 26592300 (-)
G14843 NA other downstream 423532 26568669 ~ 26571641 (-)
G14816 LOC108438405,LOC108438407,LOC107666325,LOC107563033,LOC107666324,LOC107753907 other downstream 474776 26427339 ~ 26520397 (-)
AMCG00016623 NA other downstream 753783 26239082 ~ 26241390 (-)
AMCG00016671 hoxb6ab,hoxb6,hoxb6a,LOC105013254,LOC103045875,LOC107582892 other upstream 262180 27265887 ~ 27279334 (-)
G15026 NA other upstream 365883 27369590 ~ 27370139 (-)
G15067 NA other upstream 397969 27401676 ~ 27403922 (-)
G15076 NA other upstream 421186 27424893 ~ 27428651 (-)
AMCG00016712 NA other upstream 1126305 28130012 ~ 28157200 (-)

Expression


Co-expression Network