AMCG00016663


Basic Information

Item Value
gene id AMCG00016663
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 26966297 ~ 26993948 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016663
ATGTGGCCCCGAGTTGTGGTGGGCGTCAGTTTTCAGGACGAGAGAGAAGGAAGTAGCGGCAGAACACGGGCGCTCCCGCGGGCGCATGTGGAtgagaaggggtgggggggtgcgtGTCCTCTCCCACTGGGCGTGTATTTGATGGAACTGCCACTGCATCTTGGCGTTCTGGAAGATGGCAGTGATTGGCCACAGAAGTGGTGTGCAATGGACCGGGTCTGGCTGAGAAACCCCTCCTGGGAGGGATCCCTGCTGCGGCCTCTCCACCACTAG
>TU18559
CTCTTTATTAATAAACATCAGTGTGAAGTTGCTAAGCTCAAAGTGTGGTTGAAACAATCACAAACAAGCCAAAGTACAAACCAATACCTCCAATAGTGAGGATTCACAGAGGAGAAGTACTGACTGCTTCAGTAGCAGACGGTGAAACCAATCAGTGCGCATCTCAATAGATGTTTTACCTGCtactaaaatgtaattctgatATAAGAgcatagaaataaaaaacaatgtattgacTAGAAACACCTCTGCTATTTTGTTTCGTTCACCATCAAATTGTGTTGGCCTCCTATGAACACACATTCTTATAACACATGCTTTTGGAGAGCAAGTACGTCAATCATTTGATTATTTATCGTATTCATTcgattgaaattaaataaatatacgtATATATCAATACAAATCTCGTTATCTATATAATCTTGAATCTTTTTAATGGGGTGATAACTGATAAAACTTCAGAGTGGGATTATGAGACGAAAAtacggtgtgtgtgtttgtttgcttcctttAAAACACCTCCACACGACCACTTCCGagattcattttaatacaacacGCAGAATCAGGGATCAGATATGATACTATAAAATGCCTTTCTCCCATAAAGCAGGCTGTGGTTTACGGTTTAATTACGCAGGGGCTCATTCTTATTATTGACAGGTGTTCAAATAACGTGtacctatatataatatagcattaaaataaataccaaaacatTATAGTGTGGAGGCTGGCGCCTGGCGCTTTGGTGATTTCCACAGTTCTCAAATGTGTGATCAAATACGAGGCATTTCTTATTGATATTATTGTCAGTAATTACAGGAattcaatgaaaaaataaatataattatagaaCAGTATtagtgttttcttcattttttatcacgatatatatatatatgtatatgtatagtaaCAGTACTTTAGGTTTCcctttttcttgtgtgtgtataatttatttttgctccTTGAAACCTAGGCCAACTTTGCAGATAAACTATGATCTGCAACACAgtcgtgcacacacacacagttaggcGACCTCTGTGGGTCTGCTATAAATCCAAAAAcagcaaatcaaaacacagaacaaaacgAAAATCGCCTTCATTTTAATATCGACCACTTGATCTGTTCCTTCGCCGACTGTAGTACCtgggaaaacacagaaaaaatatttatcaatttacaGACACATTCTGCTGCTCCAACTAgcctactaatactactactaaatatatatatttcacattaagaacataagaaacgagaggagcccattcgccccattgtgctcgtttggtgcccattaataactaagtgatccaaggatcctatccagtctatttttaaatgttcccacattttcagcttcaaccacattaaGCCTGCTATGTCAGTTTATTAGTCAGGTAGATGCCATGCGCAAAAATTAAAGCTCGCTGCGGTGTGGCGATGAGATGCTGCTGGACAATTAGGATCTTCGATATAGAAAGTCCTTAAATCTCAACTGATTTCTGTTCCTCTTAGTTGTTTAAgatataatgttttaacattctttaagcttttaaaaagccatttaggaaaataaatgttctccGCTCTGTTTTAAACACCAAGTCGGGACTATTCAAAGACTGTGGCATTAATAGGAGCGCGGCGGGCTGGTCTTGATCTCTACTGTAAAAGACGAACATGTCGCCACCAGATGTCGCTGCAGGTCACAGAATTAGACTCGGAGGGacccagagagagggagtgagaaagtgaaagTGCTGGGAGTTGGGCTGTAGGAGGCACCACCGGCTCAATTTCACTGGTCTCAGAGACAAAACACCcgtattttaaatatgcagttcCTTTCTCTAGGACCAGGGTGTGAGTCAGAGCCCCCCACCACATAATGTAATATTCCTTATTCCACCCACCCCTTGCTGCCAGCCCAGCACTGAGAGGCCTGCAGAGAAGCAGGGGAGATCACACCGACAGGATCTCTCCGCCGAGATCATGAGTGAACATCCGACCTGAACTGCTCccatgcattttcagttattttcaatgtatttgacccttttgttggtgtgcagtttttgcttttatcacgtttgttttgttgatttgagcacgtttattttaaagttaattgttttagtttttgttaaaatcacaaagattttaaaaattttaagtgattttaaggactGAACTGCTCCCAGTGTCCCACACAGACTGACCCCCCTCccgcaatacacacacacacacatactggcactcacacacatacacacgtgcACACCCTCTGTGACTTACATTGGAAGTCATTGCCAGTTTCTGGGAAAGGTGCTGTGTGGAGTTAGAGCAGAGGGTTAGTGTCAGGGCACAGAGCAGCACTGTCTATTGCTTTGTTGCTGTTCAGTGAGCAGGGTTAACAacagcggcggcggcggcagcaggGTAATCGTCCACACAGAGAGCCGGCTGCAGCTCAGGGACAGACGGGCTCAGTtaaacagatacacagacacctCTGGCTTACACATAATGCACAGAGtgacaagttaaattaaatgaatgaataaagcaATCAGCCTTTGCAAAGCAAGCGTAAAGTGACAGGTGGTGTCAGTGCACTGTGGTGTCTACTACACAACACAAGCTGGGCACTGTCTGTaggtgtgtacagtgtgttctTGCGCTTGCCAAGTTGCCCTGGGTGTGAGCCAGTGGTGGGGGGCGGGGCTTACCTGTGCCACACTCTGCTCCGACAGTGGGCTGTCTTCTGCCTGGGGGGGGAGGAAAGGAAAGAGGATGTCAGTCCTCTTGAGAGCTAACAGCACGGGTCTCCGCCCAAGCCTGAGGGAAAATTCCCTGAGAGCTTTGTCACAGCTTTCAATGCCaccatgcaaaacaaacatgagaaaaccaaacacacatgcacaaaaaactaaactcaaACCATAAGGTTGCACTCCACTACAGCTAGTACAGGCATCTCAGATCCACAGGGGAGCCTGAGAGAGGCGTTGATGtttcacacacaatcacaaacacagCCCTGCTCTGTGTCACAGTTTAGGCACTGAACTGCACAGTCAGGGTGGGCAGTGCAACAGGGCACTGTAACACAGAGCTCTGTGGCTGTTCTGGCAGGACTGGTCCAGTGTGTTGGGCCATTGCCAGCAGCAAACAGGATCAGAGTCACAGCACACATCACTGGGGGAGGGACAGGAATTGAAAATGCAGCcaaaagatcaaaacaaaactcagaaatgaacacacacagtcttacacactcacacacactttcacactgacactcactccctccctctcaccggCACTCTTACGCACTCTCACCCACTCTCTCTGGACTCTAAAAATAATTCAGCCCTGCGAGAATCCTCTCTGTCACCATGGACAAAATGGCAGGCGCATcgaacaaaaacacacatgccCACTACCCAACTCCATGCTCATGCAGGATATGAATTGTCTCTGGACGCACCACTGTGCAGCGGGCAGCAGCAACTCTACGTCTTTTCCAAACTACCAAACATCCAACATAAATCCAGAGCACACCAATCCACACAGAGCAGGGGGGTGGAGCTGTGCCATGCAGTGCAGCGATTCAATCTCATGCAAGTTACCTGAGCTgggttttctctttctttctctcctacTCCCCCTCTCttgttttctctccctctctctctcacaccctctccctctctctctctctctgtccctctctctgtctagGTACTCAGGTTCCTGTCTCCCTGGGCCTCAGTGTTCCCAGTGATATAGTCAAAGAGAACGAAGCCATAGGCCGGCTCAGACAGGGcctgggagagggggagagggagagagggagaaatggagggaggaggaggaggaggaggagaaaagagTAAGAAGTGTAAGAGAGGATATatacgctcacacacacacacacacaccagggtTTCCCCCAGAAAATTGCATAGGCAAGGTGGTCTGTTTCAGCTCCACTATGGACACAGGGCACACGGCAGGCATCACTCTCCCAGCCAACACTGGGGCTCAATTCACACCTCCCCtcaaaccccctcccccaaagaCTCTCACCTGCTGAGCCTAGGGTGCTGCTGAGTGAAGGTGCCCAAATGTGCATCAGCATTTAGTGAGGACTTTAAGTTCAGATTTTAGGATTTAAAGTAACATTAAGACCTGACAGAGACATTCCCCTCCGACATGCCTCGGCCAAGGTGCTGTGGAGGTGTCGTTCATTTCTACTCCTGTGAAAGCGGTCTGCTCTGAAATGCATCTCAGCAAGCCCCCCTCCGTCCCCCATCCTCTTACCCTGAAATTGACCTTCTGAATGACCTGCAGGGGGTCGCTCTCCAGAATCACCCTGCAAcagaacaacacaacagtgacatCACAGACATCCGTACTGTGATTTTCACAAGCTTGTTACTGACATTACATTCATAAGCAATAAGAATCTCTCGCTTCCTCCCCCTTTTCgcttttcctctctcccttttactttccttctctctccccgtctctttttctctgtcaaTCGTCCACCTCCTTCTCCCTCGCCCCCAAAATCACccacttcctctccctctctccctcttgcagccctcttcctccttccactccctctctcaccctccgTCAATGATCTCGTCCACCACGAGGAACGCTCCATCCATGTTGTCCAGCAGACTCCTCTTCTCCACATTCTTCCTGTGggcagacggacagacagagaggtCAGTcagggtgcgtgtgtgtgtgtGGGTGTGTTATCCGAGCAGACTGCtttggacacaaacacacacacacgcacacactcacctaCACACATTAAAGTAAACGTTTACTGTAGCGTTTCTGTTATTATTGTAGCATCGCGTGTTGTATTGCTGAGCAGGGCAGGTTCCTCACTGTCATGTGTTGCGTTGGAGTGTGTTGTGATCGGTCCCCTGGCTGTGTGGAAGGTGGTAGGTTAGGGTAGATTGGTTTGGCTCTGCTTTGTAAAAGACATAAATAGTTCTCTTTAGGGTCCTGAGTGTAGATGTTGTCCCAGTTTGCTAGTCTGTTTCCAGTGTtactgccccccctcccctcccttaTTTACGGCACTGCAGAAAAGCCAAcacctctcccctccccctctcccctctgtctGCAGTACATTGGAGCCTGTGCCTTATACGAGtcaacacacactgacacattttaTGTTACTTTGGTGTTTTACTGCAAACTGTATCTGTGCACCTTTTAATATTGTAGAAGgcgtccctctctctctgccaagtCCCGCTTTCTGGCTCAGCAGTGCCGGTtctactactgttactactcCAGCTGACGCTACTCCTGCTGCTGTTGCCCTGCAGAGTGGACTACGAGCGACCGAAGCAGCAGGCTGTATCGCCTCCGGATGGCTTGCGCGATCCTGCTGTAGAGCACAAGATGAATACTGCGGCTGCAGCACATTAGAGCAAACTCAACCGGAGTTACTGctcattcctcctcctctctaTAGCGGGCGCTCCCGCGGGCGCATGTGGAtgagaaggggtgggggggtgcgtGTCCTCTCCCACTGGGCGTGTATTTGATGGAACTGCCACTGCATCTTGGCGTTCTGGAAGATGGCAGTGATTGGCCACAGAAGTGGTGTGCAATGGACCGGGTCTGGCTGAGAAGTACGATGTACAAACCCACTCTACAACAACTTTTGATTGAGGTCACtttatgatcattattaatatttattttatcgtTATTTACGTTCTGTTTTGGGCAGCATTACCCGCGAGCACTTGGATAGGATATGTAGCGCCATGTAACCATCAGTCTTGACAATGATCTTTTGGGTGAAATCTGCCTGCTCTCGGGTTTAGACAAGGGCTGATCATGCACGGGCTGACAACTAATCTAAATTAGAAACCATGGATACATAATGGGGCAAATCCAGCTTTAGGACCCCCACAGCATGTACTGAAGTGTCCCAGACCCCTCCTGGGAGGGATCCCTGCTGCGGCCTCTCCACCACTAGCCTGGATTCAAATATGAAAACGCTGTATTTTAGTGATCAATCtattaaaggtaaaaaaaaaaaaaaagtaactttaATTTTGACTTCTTGGTGAATTCTTCTATTCTGTATTCTGATTTGGAGAGGGGAGGTGGAGGGTAGGATGACAAAAACACTGGAATTTAAGATGTATAGGGTTTGAAGTTTTATTACCAAAACAAGTCACTGAAGGAGGCTGCGGTTGCTCGGCTGTAGGTTTGATTTTTCTCTGCTTGAAAATGATACACTGGGATTCCACCTGCATATTCCAAAGCACATTCTTTAGGAAGCTCctacatttgctttttaaaccaCATTTTGTTCTCCTTTACGTGTGTGTTCTGTAAATATTTCgatgtttgaaatgtgtgtctgtactgttttctttcctgtctGTGTAGAGGACTTCAGTGTGTTGTCttgggttttttattttgctctaattttcatttttatttggttgtatAATTTTTTGGTTTACTTTTTGAACATTTGCTGGCAATCTGGGATTCTTCTTATACCggataataaaatgtttttattttcaactgcgactgttttttaaaatgtatttatttttaaaaggcaatcCTTTGTCCAAATGCAAAGCACACCTAATTATACCTTCGCCAGACTTGCAAGCAGACATCTTGTAGGAGTTCTCACAGGgcaggttttattttggttaGCGCCTCTATCCATGCCCACACAGGATCATTAAATCTGAGTGTTGTGTCTGTATACTTACACACCTAGTGTCACGGCCTCCTGAGCTATTAGAAAGCCGAGACCCATAAgggcaggggtggctaaccctgatACTGAAGAGTTGCAATCCTGCAgattttccaggtctctctaaattaccaatcatTGGCTACCTTGAATGGGatattttgcttaattaagacccacaattggttcaattaagcagttaatgatctgGTTAGAACACAACCCTGTAGGCCccgcggctctccaggaccagggttagc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016663 False 273 mRNA 0.61 3 26991044 26992935
TU18559 True 7083 lncRNA 0.45 2 26966297 26993948

Neighbor

gene id symbol gene type direction distance location
AMCG00016655 NA coding upstream 47529 26911968 ~ 26918768 (+)
AMCG00016654 NA coding upstream 68763 26893279 ~ 26897534 (+)
AMCG00016650 NA coding upstream 97116 26857718 ~ 26869181 (+)
AMCG00016647 NA coding upstream 266096 26683642 ~ 26700201 (+)
AMCG00016636 NA coding upstream 298617 26665445 ~ 26667680 (+)
AMCG00016660 NA coding downstream 5319 26999267 ~ 27009741 (+)
AMCG00016668 NA coding downstream 364830 27358778 ~ 27364948 (+)
AMCG00016677 NA coding downstream 400010 27393958 ~ 27403922 (+)
AMCG00016680 NA coding downstream 411460 27405408 ~ 27405728 (+)
AMCG00016676 atp5g1,LOC107740625,LOC106600830 coding downstream 412783 27406731 ~ 27409921 (+)
G14803 NA non-coding upstream 250496 26715569 ~ 26715801 (+)
G14802 NA non-coding upstream 253168 26712231 ~ 26713129 (+)
G14800 NA non-coding upstream 261093 26704997 ~ 26705204 (+)
G14791 NA non-coding upstream 308979 26589606 ~ 26657318 (+)
G14793 NA non-coding upstream 333105 26626707 ~ 26633192 (+)
G14992 NA non-coding downstream 268942 27262890 ~ 27274297 (+)
G15005 hoxb7a,hxb7a,hoxb7,hoxb7ab non-coding downstream 287476 27281424 ~ 27282569 (+)
G15025 NA non-coding downstream 375641 27369589 ~ 27370138 (+)
G15224 NA non-coding downstream 1122970 28116918 ~ 28117190 (+)
G15226 NA non-coding downstream 1124595 28118543 ~ 28119649 (+)
AMCG00016635 NA other upstream 308872 26600093 ~ 26657425 (+)
AMCG00016638 krt222 other upstream 418085 26527319 ~ 26548212 (+)
AMCG00016640 NA other upstream 467055 26489938 ~ 26499242 (+)
AMCG00016633 NA other upstream 532641 26427339 ~ 26433656 (+)
AMCG00016625 mllt10,LOC106942732 other upstream 663783 26285802 ~ 26302514 (+)
AMCG00016683 NA other downstream 548538 27542486 ~ 27553120 (+)
AMCG00016691 NA other downstream 594531 27588479 ~ 27604879 (+)
AMCG00016690 NA other downstream 619157 27613105 ~ 27626090 (+)
AMCG00016699 LOC106607176 other downstream 783479 27777427 ~ 27799126 (+)
AMCG00016705 NA other downstream 835320 27829268 ~ 27833537 (+)

Expression


Co-expression Network