AMCG00016665 (LOC105013251)


Basic Information

Item Value
gene id AMCG00016665
gene name LOC105013251
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27217458 ~ 27219724 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016665
ATGCAGAAAACTACCTACTACGACAACTCGACACTTTTCGGAGGCTACTCGTACCAAGGGGCCAACGGCTTCGGCTATGATGCCCCCCAGCAGGCCTACCAGCCCTCGACCCACCTGGAGAGCGACTACCAGAGATCGGCGTGCTCGCTGCAGTCCCTGGGCAATAGCACCTCCCAACACGCCAAAACGAAAGACCTCAACGGGAGCTGTATGCGCCCCAGCCTACCACCTGAGCATCACCAAGCCCCTCCCGTCTCCCCTCCCCAGAACCCCGCCAGCACCACCAACAGCAGCTCGGCGCAGCAGccgggcagcagcagcagcagcagcagcagcagcagtaaaacaGCCCCCTCCAAGTCCTCTTCTCtgccccccaaccccaaccTCACCAAGCAGATTTTCCCCTGGATGAAAGAGTCGAGACAGACCTcgaaacagaaaaacagctcCCCCAGTACAGGTACAGCGAACGGTGCTCCGCCCCTCCCCATGCAGTCCTCGGCCGGTTTTATGAACTCCATGCACTCAATGACTAGTAACTACGACGCGCCCTCCCCGCCCTCCTTCAACAAGCCTCATCAGAACGCCTATGCCATGTCCACGGCCTACCAAAACCCCATGAAAAGCTGCCCCTCGCAACAGAAGTATGCCAACACGGCGCCAGAATACGACCCCCACGGGCTACAGGGTAACGGTGGCAGCTATGGGACTCCCAATCTCCAGGGCAGCCCCGTGTATGTCGGAGGGAACTATGTGGATTCGATGCCCGCCTCGGGCCCGTCTCTGTACGGACTCAACCACCTGCCGCATCACCAGGCTAACAACATGGACTACAACGGTGCCACGCAGATGACGTCTAGTCAGCACCACGGACCTTGTGACCCCCACCCGACATACACAGACCTTTCAGCGCACCATCCTTCTCAGGGTAGAATCCAGGAAGCGCCCAAACTAACTCATCTGTAG

Function

NR:

description
PREDICTED: homeobox protein Hox-B3a

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016665 True 969 mRNA 0.59 2 27217458 27219724

Neighbor

gene id symbol gene type direction distance location
AMCG00016664 hoxb2 coding downstream 4536 27210523 ~ 27212922 (-)
AMCG00016667 NA coding downstream 22557 27187836 ~ 27194901 (-)
AMCG00016658 copz2,LOC107740614,LOC107662379,LOC107585036,LOC105013247,LOC106607483 coding downstream 242807 26967410 ~ 26974651 (-)
AMCG00016656 LOC107677865 coding downstream 270894 26940980 ~ 26946564 (-)
AMCG00016659 NA coding downstream 315714 26901376 ~ 26901744 (-)
AMCG00016666 hoxb4,hoxb4ab coding upstream 27836 27247560 ~ 27247997 (-)
AMCG00016674 NA coding upstream 66489 27286213 ~ 27286461 (-)
AMCG00016673 hoxb8,hoxb8ab,hoxb8aa coding upstream 67150 27286874 ~ 27290861 (-)
AMCG00016672 hoxb9ab,hoxb9,hoxb9a,LOC106600835 coding upstream 79879 27299603 ~ 27313173 (-)
AMCG00016669 hoxb13aa,hoxb13ab,hoxb13 coding upstream 118283 27338007 ~ 27339593 (-)
G14943 nfe2l1,nfe2l1b,LOC107565927 non-coding downstream 233972 26979158 ~ 26983486 (-)
G14882 NA non-coding downstream 475120 26741085 ~ 26742338 (-)
G14832 NA non-coding downstream 694411 26522804 ~ 26523047 (-)
G14818 NA non-coding downstream 749359 26430455 ~ 26468099 (-)
G14775 NA non-coding downstream 792208 26425032 ~ 26425250 (-)
G14999 NA non-coding upstream 24242 27243966 ~ 27245247 (-)
G15001 hoxb5a,LOC104941372,LOC103365501,LOC108278507,LOC108413114 non-coding upstream 43989 27263713 ~ 27265603 (-)
G15016 hoxb9 non-coding upstream 76361 27296085 ~ 27308958 (-)
G15066 NA non-coding upstream 175395 27395119 ~ 27398583 (-)
G15071 NA non-coding upstream 193276 27413000 ~ 27413229 (-)
AMCG00016662 cbx1,cbx1b,LOC108279860 other downstream 213751 26995173 ~ 27003707 (-)
AMCG00016644 NA other downstream 573965 26626707 ~ 26643493 (-)
AMCG00016643 NA other downstream 625158 26582526 ~ 26592300 (-)
G14843 NA other downstream 645817 26568669 ~ 26571641 (-)
G14816 LOC108438405,LOC108438407,LOC107666325,LOC107563033,LOC107666324,LOC107753907 other downstream 697061 26427339 ~ 26520397 (-)
AMCG00016671 hoxb6ab,hoxb6,hoxb6a,LOC105013254,LOC103045875,LOC107582892 other upstream 46163 27265887 ~ 27279334 (-)
G15026 NA other upstream 149866 27369590 ~ 27370139 (-)
G15067 NA other upstream 181952 27401676 ~ 27403922 (-)
G15076 NA other upstream 205169 27424893 ~ 27428651 (-)
AMCG00016712 NA other upstream 910288 28130012 ~ 28157200 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000034_01625293_01629938 HOXB3AA, HOXB3A, HOXB3 coding CI01000034 null 1624700 ~ 1631372 (-)
rainbow trout (Oncorhynchus mykiss) G1167397 hoxb3aa non-coding NC_048577.1 CM023231.2 34091287 ~ 34093735 (+)