AMCG00016667


Basic Information

Item Value
gene id AMCG00016667
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27187836 ~ 27194901 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016667
ATGGGGATCCCTTACGCCAGCACGGGGGCCACAGCCTATGGCTCCCAGACGTGCTCGAACCCGGACTATGGGCACCAGTATTACCTCAACCAGGAGCAGGAAAACGTTTACTTCCAGTCCTCAGGTTACTCCGCGCCCAGTATGGGGCCCAACCTCGGCTCTCTGGCTGGTGGCTATTGCGGGGCCCCCGGAGCTGTGGCTGCCAGCCAGTACCCGCACACAGCCTGTCCGGgtcaggagcagcagcagcagcagcagggctaTCTGCACAGCTCCTTCTCCAGCCTGTCTCCCACCCAGACGGGGGAGTCAGACCTGAGCTGCCAGGCAGAGCAGAATTCGTCGGGTCAGACGTTCGACTGGATGAAAGTCAAGAGGAACCCCCCCAAAACAGTGGTGTCGCGTCCAGTCGAGTCGCAGGAGCGTTTGTCCGCTCCCCGGGACGCCCTTTGA

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0017001 antibiotic catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016667 True 453 mRNA 0.62 2 27187836 27194901

Neighbor

gene id symbol gene type direction distance location
AMCG00016658 copz2,LOC107740614,LOC107662379,LOC107585036,LOC105013247,LOC106607483 coding downstream 213185 26967410 ~ 26974651 (-)
AMCG00016656 LOC107677865 coding downstream 241272 26940980 ~ 26946564 (-)
AMCG00016659 NA coding downstream 286092 26901376 ~ 26901744 (-)
AMCG00016657 NA coding downstream 295904 26888334 ~ 26891932 (-)
AMCG00016652 NA coding downstream 300955 26872895 ~ 26886881 (-)
AMCG00016664 hoxb2 coding upstream 15622 27210523 ~ 27212922 (-)
AMCG00016665 LOC105013251 coding upstream 22557 27217458 ~ 27219724 (-)
AMCG00016666 hoxb4,hoxb4ab coding upstream 52659 27247560 ~ 27247997 (-)
AMCG00016674 NA coding upstream 91312 27286213 ~ 27286461 (-)
AMCG00016673 hoxb8,hoxb8ab,hoxb8aa coding upstream 91973 27286874 ~ 27290861 (-)
G14943 nfe2l1,nfe2l1b,LOC107565927 non-coding downstream 204350 26979158 ~ 26983486 (-)
G14882 NA non-coding downstream 445498 26741085 ~ 26742338 (-)
G14832 NA non-coding downstream 664789 26522804 ~ 26523047 (-)
G14818 NA non-coding downstream 719737 26430455 ~ 26468099 (-)
G14775 NA non-coding downstream 762586 26425032 ~ 26425250 (-)
G14999 NA non-coding upstream 49065 27243966 ~ 27245247 (-)
G15001 hoxb5a,LOC104941372,LOC103365501,LOC108278507,LOC108413114 non-coding upstream 68812 27263713 ~ 27265603 (-)
G15016 hoxb9 non-coding upstream 101184 27296085 ~ 27308958 (-)
G15066 NA non-coding upstream 200218 27395119 ~ 27398583 (-)
G15071 NA non-coding upstream 218099 27413000 ~ 27413229 (-)
AMCG00016662 cbx1,cbx1b,LOC108279860 other downstream 184129 26995173 ~ 27003707 (-)
AMCG00016644 NA other downstream 544343 26626707 ~ 26643493 (-)
AMCG00016643 NA other downstream 595536 26582526 ~ 26592300 (-)
G14843 NA other downstream 616195 26568669 ~ 26571641 (-)
G14816 LOC108438405,LOC108438407,LOC107666325,LOC107563033,LOC107666324,LOC107753907 other downstream 667439 26427339 ~ 26520397 (-)
AMCG00016671 hoxb6ab,hoxb6,hoxb6a,LOC105013254,LOC103045875,LOC107582892 other upstream 70986 27265887 ~ 27279334 (-)
G15026 NA other upstream 174689 27369590 ~ 27370139 (-)
G15067 NA other upstream 206775 27401676 ~ 27403922 (-)
G15076 NA other upstream 229992 27424893 ~ 27428651 (-)
AMCG00016712 NA other upstream 935111 28130012 ~ 28157200 (-)

Expression


Co-expression Network