AMCG00016670 (LOC106579309)



Basic Information


Item Value
gene id AMCG00016670
gene name LOC106579309
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27370979 ~ 27375700 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00016670
ATGCGGCAGGAGGTGCCTGAGACGGGCAGGTGTGTGTTAGTGCTCTGTGTTGACGGACGCTCTCTGGCGCAGCCCTTCATCGTGGACGGCTTCAAGTTCGACCTCCGGATCTACGTGCTGGTGACCTCCTGCGACCCTCTCCGCATCTTCCTGTATAAGGAGGGCCTGGCCCGCTTCTGCACCACCAAGTACAGCGACCCTACCAACAGCAACGTGGACGACGTCTGTATGCACCTGACCAACTATGCTATCAACAAGCACAGCGAGAACTTCGTGCGAAACGATGACACAGGCAGCAAAAGGAAGCTGTCCACCTTCAATAAGCACATGGAGTCTCTGTGCTACGACACGGACAAGATGTGGGCAGACATCGAGGACGTGGTCATCAAGACGCTGATCTCGGCCCACCCCACCCTGAAGCACAACTACCACTCCTGCTTCCCCCACCACGCTGTCGGCAGTGCCTGCTTCGAGATCCTGGGCTTCGACGTGCTGCTGGACCGCCGTCTCAAACCCTGGCTGCTGGAGgTGAATCATTCCCCCAGCTTTACGACGGACTCCCGGCTGGACCGCGAGGTGAAGGACGGGCTGCTGTACGACACGCTGGTGCTCATCAACCTGGGCGCCTGCGACCGCCGCCGGGTCATCGAGGACGAGCGCCGCCGGGTGCAGGAGCGACTGCTGCAGCACAACCGCTCCCGAGAGGCCAGGAGTGAGGAGCTGAGGCAGAGCCAGGCGGCCTGGCTAGATCGGGCACAGCGCTACGAGGAAGGGCACCTGGGCGGGTTCCGCCAGATCTACCCCCGGCAGGGAGCGGAGCAGTACAACAAAGACATGGGCGTGGTGGAGAGGGTGTACCAGCTGCTGCAGGGCAACCCCAATGCCCCACCTCATGCCTGCCAGCCCCCCCCACAGCACAGGATCAACCTCGGTCCCATGCTGCAGTCGGCGGGGGAGCTGAGCCGGATGCCTCTCGCCCAGTGCGGCCCGGTTCCCCGGCATGTCCAGATCTGCGGCCTCTCTCTGCCCGCGGCGCCGGGGGTGCCTGAGGCCAGCCTGTGCCTGCAGTATGTGAACTCCCAGGTGCTCAGGCAGCGTTGGCCAGGGCTGCAGAGGGGGACCCTGGGGCCAGGGCCAAGCGAGTGGGCTAGTGCTCTGCGTTGCGACGCCCCGGAGGAGCCGCCACAGAGAGGGCCAGCGCAGCCACGCAGGGCCAGCAGCGCACACCGGATCCCCAGGACCAGCAGCGCCAGTCTGGGCACACCGAGTCGGCTAGGCAGCATGAGCTCCTACTCGGAGTCCCGCGGACGGGCACAGCTTGGCAACGTGCCCCCCAACCGGCCGCTGTACCCCCAAGTGGGCGCTGACCCCCAGGCCCTGCAGAGCCTCTTCGTCATCTCCAGCGCGGCCCCCCTGGTCCGCCGGCCCGGGTTCTCCCAGCCCATCCGAACCAACACCCACAAGACCCTGCAACCCACGACGGGCAGGTAG

Function


NR:

description
tubulin tyrosine ligase-like family member 6a

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00016670 True 1491 mRNA 0.65 8 27370979 27375700

Neighbor


gene id symbol gene type direction distance location
AMCG00016669 hoxb13aa,hoxb13ab,hoxb13 coding downstream 31386 27338007 ~ 27339593 (-)
AMCG00016672 hoxb9ab,hoxb9,hoxb9a,LOC106600835 coding downstream 57806 27299603 ~ 27313173 (-)
AMCG00016673 hoxb8,hoxb8ab,hoxb8aa coding downstream 80118 27286874 ~ 27290861 (-)
AMCG00016674 NA coding downstream 84518 27286213 ~ 27286461 (-)
AMCG00016666 hoxb4,hoxb4ab coding downstream 122982 27247560 ~ 27247997 (-)
AMCG00016675 ttll6,LOC107582749,LOC107727303,LOC107666932 coding upstream 265 27375965 ~ 27381088 (-)
AMCG00016681 snf8,LOC107734219,LOC107692042,LOC107554070,LOC107584075,LOC107660854 coding upstream 54402 27430102 ~ 27433860 (-)
AMCG00016688 nr1d1,LOC102302421 coding upstream 133945 27509645 ~ 27516973 (-)
AMCG00016692 NA coding upstream 267939 27643639 ~ 27650849 (-)
AMCG00016693 LOC107388104 coding upstream 280048 27655748 ~ 27669412 (-)
G15016 hoxb9 non-coding downstream 62021 27296085 ~ 27308958 (-)
G15001 hoxb5a,LOC104941372,LOC103365501,LOC108278507,LOC108413114 non-coding downstream 105376 27263713 ~ 27265603 (-)
G14999 NA non-coding downstream 125732 27243966 ~ 27245247 (-)
G14943 nfe2l1,nfe2l1b,LOC107565927 non-coding downstream 387493 26979158 ~ 26983486 (-)
G14882 NA non-coding downstream 628641 26741085 ~ 26742338 (-)
G15066 NA non-coding upstream 19419 27395119 ~ 27398583 (-)
G15071 NA non-coding upstream 37300 27413000 ~ 27413229 (-)
G15073 NA non-coding upstream 39953 27415653 ~ 27415892 (-)
G15074 NA non-coding upstream 40549 27416249 ~ 27416539 (-)
G15075 NA non-coding upstream 48854 27424554 ~ 27424821 (-)
G15026 NA other downstream 840 27369590 ~ 27370139 (-)
AMCG00016671 hoxb6ab,hoxb6,hoxb6a,LOC105013254,LOC103045875,LOC107582892 other downstream 91645 27265887 ~ 27279334 (-)
AMCG00016662 cbx1,cbx1b,LOC108279860 other downstream 367272 26995173 ~ 27003707 (-)
AMCG00016644 NA other downstream 727486 26626707 ~ 26643493 (-)
AMCG00016643 NA other downstream 778679 26582526 ~ 26592300 (-)
G15067 NA other upstream 25976 27401676 ~ 27403922 (-)
G15076 NA other upstream 49193 27424893 ~ 27428651 (-)
AMCG00016712 NA other upstream 754312 28130012 ~ 28157200 (-)
AMCG00016732 NA other upstream 1405772 28781472 ~ 28785507 (-)
AMCG00016740 ormdl3,LOC108273759,LOC107723636,LOC107657273,LOC107556587,LOC102217224,LOC106521946 other upstream 1826172 29201872 ~ 29225587 (-)

Expression



Co-expression Network