AMCG00016671 (hoxb6ab,hoxb6,hoxb6a,LOC105013254,LOC103045875,LOC107582892)


Basic Information

Item Value
gene id AMCG00016671
gene name hoxb6ab,hoxb6,hoxb6a,LOC105013254,LOC103045875,LOC107582892
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27265887 ~ 27279334 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016671
CTAATAGCTAAACCACTTGGactataaaacacaacaaatcatAAACCAAGGAAAAGAAGTGTACCTCCAAATGAGTTCCTATTTTGTAAACTCTACTTTCCCCGTGACTCTGCCCGGCGGACAGGAGTCTTTCTTGGGACAGATTCCGTTATATTCCTCCGGATACACGGATCCTTTAAGGCACTACCCCGGCGCAGCCTATGGATCTGCAGGCGTTCCAGACAAGGCTTACCCATCTACTTATTATCAGCAGGCTAACGGTGCCTACGGCCGGGCCAACACAGCCGGAGCCTGTGACTACGCAGCGGCCAGTTTTTACCGAGAGAAGGACCCGGCGTGCGCGCTGTCCAGCCTGGAGGAGCACTCTCTCGGGCTCAGCCAGGAGCAGCGCAAGACAGACTGCTCGgggcagaataaaaacatattcgCTGAAAGTGACGACCAGAAGACATCCGCTCCCGTTTACCCCTGGATGCAGCGCATGAACTCCTGCAACGGGCGATACCCAAATGGCCCCGACTATCAGTTACTAAATTATGGAACTAGCAGTAGCGCTATGAACGGTTCGTACAGGGATTCCGGCACCATGCACTCGGGCTCATACGGCTACAACTACAATGGGATGGACCTAAGCGTCAATCGCTCAACCTCCTCCGGCCACTTTGGGGCTATTGGTGATAACTCCCGGGGTTTTCAGTCTCCGGCCCCGGAGTCCCGGTTCAGGCAGCCGTCTAGCTGCTCTCTATCGTCTCCCGAGTCCCTGCCCTGTTCCAACAGCGAAACTCTCGGACCAAAAAGCTCATCGCCCCCTTCCGATCAGAGCGCCAGCACCGGCAGCAGTAACCTCGCCGCCAACAGCAGCACACATTTCACAGAACTAGACGAGACCAGCGCTTCTTCCGAGACGGAGGAAAGCACCCACAGAGCCAGCAACCCCATTCCCcggacacagcagcagcagcagcagcagcagcagcaggaggcgACTACAACCTCCACCACGGCAGCGGCCGATGGACAAGCACCACAGATATTCCCTTGGATGCGGAAGCTTCACATTAGCCat
>TU18636
CCGCACCTTGTGTAGCAACACTGTCCTCCTTAAAGGTTCTTGgctctttttcatttatataaataaaaaacataactttGATGAGTTCCTCGGCGCCTGCTAGAGACAGATATAGCAGGCTAGCAGTATTCTCGCTCGCCTATGCTAATGTGGCCGGGTTTGATTGGGATTTCCGCAGCAATGGAGGGGGGACGTGAAATCTGGGCACGATGGAGAACTGATCTCATTTTTCATATAGGGATCCTTCTCGCCTTTACTAATGTAAATGACAGAGGAGGAAGCAGCGACAAGCAGCGTCAGAGTTGCCGCTTCAACACTAATGGCTGGACAGACTGGAGCAACAAGAATGTCAAAgcgaaaacaaaatcacaagtCCTGGTGTGCGAGTCCTGAGACTGAGTGAAGGATGATCCTCACAGCAGGCTAACGGTGCCTACGGCCGGGCCAACACAGCCGGAGCCTGTGACTACGCAGCGGCCAGTTTTTACCGAGAGAAGGACCCGGCGTGCGCGCTGTCCAGCCTGGAGGAGCACTCTCTCGGGCTCAGCCAGGAGCAGCGCAAGACAGACTGCTCGgggcagaataaaaacatattcgCTGAAAGTGACGACCAGAAGACATCCGCTCCCGTTTACCCCTGGATGCAGCGCATGAACTCCTGCAACGGGTCGGTCTTCGGCAGCACCGGCCGCAGGGGCCGGCAGACCTACACACGCTACCAGACCctggagctggagaaggagTTCCACTTTAACAGGTATCTGACCCGGCGACGTCGCATCGAGATTGCGCACGCACTGTGCCTGACGGAACGACAGATTAAGATTTGGTTCCAGAACCGCAGGATGAAGtggaaaaaagagaacaaactGATCAACTCTTCACAAACCAGcggagaagaggaggaagaaaagagGACAGAATAACGCAGTGACAAAGAAACGTCAAATACGCAGATACCTTTTCTGCGCCATTCGAATCATCAATTCTAAAGacttgtttatgtttatattttagttttgaatttacactttttattatttttgttttatttttgctgttttatttttcttgtttaattttattttattggtaaatTTGCACCGGTGAAGTTGTTTAGTAATTTCGTAGTAGCATTCCAGACGATCACCTAACTTCTATTTTTtacttgttattgttgttgtaattattattattattattattattattattattattattattattattattattattgttactgttactgttattgttattattattgatgttgttgttattattgttattttaatttcattgtattaCGGGCAACCGAACTACCTGTGTATCTGGTCGCTTTCCCTGAGTTTAGCATTTGCCTCTATGACTTAAATGACTCTGTTTAaggaaactgtttaaaataaatgtcatattcgtgttcatatttaaactctgtataaaacaaacacgAAACAAAGTAATTCCCTGCACGGTGGATTTATGTCTTTCTTTTGTAAGTTAAATACCCGGGATCCAAATATGTGAGTTGTTTTATAGTTTAAGGGGGAAATGAATCTACTGAAAAAATAGTACTACCTAGGCTGgctaaaaaaaagtttatattttattaattttgtacgTGGTTGTGTTTGTAGTTTTGTCAAAAAAGGTATCTAATGGAGGaatcattcaataaaaaataatattgtctcGAATTGCTTTTCCC

Function

symbol description
hoxb6a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including lateral line system; mesoderm; neural plate; neural tube; and spinal cord. Orthologous to human HOXB6 (homeobox B6).
hoxb6 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in anterior/posterior pattern specification and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within embryonic skeletal system morphogenesis and erythrocyte homeostasis. Predicted to be part of chromatin. Predicted to be active in nucleus.

NR:

description
PREDICTED: homeobox protein Hox-B6

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016671 False 1066 mRNA 0.56 2 27265887 27272025
TU18636 True 1714 TUCP 0.41 3 27268820 27279334

Neighbor

gene id symbol gene type direction distance location
AMCG00016666 hoxb4,hoxb4ab coding downstream 17890 27247560 ~ 27247997 (-)
AMCG00016665 LOC105013251 coding downstream 46163 27217458 ~ 27219724 (-)
AMCG00016664 hoxb2 coding downstream 52965 27210523 ~ 27212922 (-)
AMCG00016667 NA coding downstream 70986 27187836 ~ 27194901 (-)
AMCG00016658 copz2,LOC107740614,LOC107662379,LOC107585036,LOC105013247,LOC106607483 coding downstream 291236 26967410 ~ 26974651 (-)
AMCG00016674 NA coding upstream 6879 27286213 ~ 27286461 (-)
AMCG00016673 hoxb8,hoxb8ab,hoxb8aa coding upstream 7540 27286874 ~ 27290861 (-)
AMCG00016672 hoxb9ab,hoxb9,hoxb9a,LOC106600835 coding upstream 20269 27299603 ~ 27313173 (-)
AMCG00016669 hoxb13aa,hoxb13ab,hoxb13 coding upstream 58673 27338007 ~ 27339593 (-)
AMCG00016670 LOC106579309 coding upstream 91645 27370979 ~ 27375700 (-)
G15001 hoxb5a,LOC104941372,LOC103365501,LOC108278507,LOC108413114 non-coding downstream 284 27263713 ~ 27265603 (-)
G14999 NA non-coding downstream 20640 27243966 ~ 27245247 (-)
G14943 nfe2l1,nfe2l1b,LOC107565927 non-coding downstream 282401 26979158 ~ 26983486 (-)
G14882 NA non-coding downstream 523549 26741085 ~ 26742338 (-)
G14832 NA non-coding downstream 742840 26522804 ~ 26523047 (-)
G15016 hoxb9 non-coding upstream 16751 27296085 ~ 27308958 (-)
G15066 NA non-coding upstream 115785 27395119 ~ 27398583 (-)
G15071 NA non-coding upstream 133666 27413000 ~ 27413229 (-)
G15073 NA non-coding upstream 136319 27415653 ~ 27415892 (-)
G15074 NA non-coding upstream 136915 27416249 ~ 27416539 (-)
AMCG00016662 cbx1,cbx1b,LOC108279860 other downstream 262180 26995173 ~ 27003707 (-)
AMCG00016644 NA other downstream 622394 26626707 ~ 26643493 (-)
AMCG00016643 NA other downstream 673587 26582526 ~ 26592300 (-)
G14843 NA other downstream 694246 26568669 ~ 26571641 (-)
G14816 LOC108438405,LOC108438407,LOC107666325,LOC107563033,LOC107666324,LOC107753907 other downstream 745490 26427339 ~ 26520397 (-)
G15026 NA other upstream 90256 27369590 ~ 27370139 (-)
G15067 NA other upstream 122342 27401676 ~ 27403922 (-)
G15076 NA other upstream 145559 27424893 ~ 27428651 (-)
AMCG00016712 NA other upstream 850678 28130012 ~ 28157200 (-)
AMCG00016732 NA other upstream 1502138 28781472 ~ 28785507 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025308 hoxb6a coding NC_007114.7 CM002887.2 23703704 ~ 23705746 (+)
grasscarp (Ctenopharyngodon idella) CI01000034_01670204_01671915 HOXB6AA, HOXB6A, HOXB6AB, HOXB6 coding CI01000034 null 1669903 ~ 1671935 (-)