AMCG00016672 (hoxb9ab,hoxb9,hoxb9a,LOC106600835)


Basic Information

Item Value
gene id AMCG00016672
gene name hoxb9ab,hoxb9,hoxb9a,LOC106600835
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27299603 ~ 27313173 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016672
ATGAACCAACACCAGCACCAACACCAGCACCAGCAGTCGGCAATGGCTTTGCTTCCGCACCAGTTTCACCCGGGCTTGGTAAACTGGGGAGATCACTCCAGCCCCGGCCGGGTGCAGCAGGTCAGCGCTTGTCCCTATAGCGGCTCAAACGGAAAAGATGATTCCTCGTACTTCTATCTGGACTCGGATAAGCATTCAAAACCACTGCCAGACGTTTCCGCCTTCACCAGACTCGTGTCCGAGATGGGCTCTATGAGCAGCGCCGCAGGACACATCCAGGGCTACTTCCGTCCAGAGCAGTCCTACACTGGGCTCAAGCTGCTCGAGTACAGCGCCCAGGACCTGTCCCCAGTCAGCCACCCCATCCCGACCCACTCAGATACACAGCCGCTGTACAACCTGAGCTTCCCCTCGcagcactgcacagacacagatagaAAACACGGGGGCGATGACCTAGCAGCAGTCTGCAACTCTGTCTGTCCACCTCAGAAAGTCaacggcagcagcagcagcaccagcagcaacaacaacaacaacaacaacaacaacaaaaacaaggaagCTGTGGCCCCAGGTTTACTGCAAGAAAAGCCCCTCTCAGAATTTCCCGAGGGCGATAAAACTCCCAGACAGGACGCGCAAGGTGGTTTCCAGCCTAAACCTCCTGTTTTCGGCGCGTCCTGGAGTGCTTTCAATCCCCACTCGGCTAATGGGTTACCCGCGGTCTACCATCCCTACATCCCGCCTCAGGCTGCCCCCTCCTCGGACACTAGGTACCTGCGCACTTGGCTCGATTGTGCCCCGAGAACTGAGCCCCTGGCCGGACAGGGGCAGGTCAAACTAGAGCCACTGCTGGGACACCTCGGCGAGCCCCCAAAAACCGGGGGACAGGAGTACAGTTTGGAGCCTTCCTCGGCCAGGGAGATTAATTCCAATCAAGGCTCCGGCTTCGAGGACAATAAGGATATTTGTGAAGGCAGCGAGGACAAAGAGGGTCCAGATCAAAAGAGTACCGTCTCTCGCGTTGACAAGCCACTGCGGGCTTAG

Function

symbol description
hoxb9a Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in embryonic skeletal system morphogenesis; regionalization; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated and transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in CNS interneuron; paraxial mesoderm; and spinal cord neural tube. Orthologous to human HOXB9 (homeobox B9).
hoxb9 Enables sequence-specific double-stranded DNA binding activity. Involved in cell chemotaxis. Located in nucleoplasm.

NR:

description
homeobox protein HoxB9ab

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016672 True 1050 mRNA 0.57 3 27299603 27313173

Neighbor

gene id symbol gene type direction distance location
AMCG00016673 hoxb8,hoxb8ab,hoxb8aa coding downstream 8742 27286874 ~ 27290861 (-)
AMCG00016674 NA coding downstream 13142 27286213 ~ 27286461 (-)
AMCG00016666 hoxb4,hoxb4ab coding downstream 51606 27247560 ~ 27247997 (-)
AMCG00016665 LOC105013251 coding downstream 79879 27217458 ~ 27219724 (-)
AMCG00016664 hoxb2 coding downstream 86681 27210523 ~ 27212922 (-)
AMCG00016669 hoxb13aa,hoxb13ab,hoxb13 coding upstream 24834 27338007 ~ 27339593 (-)
AMCG00016670 LOC106579309 coding upstream 57806 27370979 ~ 27375700 (-)
AMCG00016675 ttll6,LOC107582749,LOC107727303,LOC107666932 coding upstream 62792 27375965 ~ 27381088 (-)
AMCG00016681 snf8,LOC107734219,LOC107692042,LOC107554070,LOC107584075,LOC107660854 coding upstream 116929 27430102 ~ 27433860 (-)
AMCG00016688 nr1d1,LOC102302421 coding upstream 196472 27509645 ~ 27516973 (-)
G15001 hoxb5a,LOC104941372,LOC103365501,LOC108278507,LOC108413114 non-coding downstream 34000 27263713 ~ 27265603 (-)
G14999 NA non-coding downstream 54356 27243966 ~ 27245247 (-)
G14943 nfe2l1,nfe2l1b,LOC107565927 non-coding downstream 316117 26979158 ~ 26983486 (-)
G14882 NA non-coding downstream 557265 26741085 ~ 26742338 (-)
G14832 NA non-coding downstream 776556 26522804 ~ 26523047 (-)
G15066 NA non-coding upstream 81946 27395119 ~ 27398583 (-)
G15071 NA non-coding upstream 99827 27413000 ~ 27413229 (-)
G15073 NA non-coding upstream 102480 27415653 ~ 27415892 (-)
G15074 NA non-coding upstream 103076 27416249 ~ 27416539 (-)
G15075 NA non-coding upstream 111381 27424554 ~ 27424821 (-)
AMCG00016671 hoxb6ab,hoxb6,hoxb6a,LOC105013254,LOC103045875,LOC107582892 other downstream 20269 27265887 ~ 27279334 (-)
AMCG00016662 cbx1,cbx1b,LOC108279860 other downstream 295896 26995173 ~ 27003707 (-)
AMCG00016644 NA other downstream 656110 26626707 ~ 26643493 (-)
AMCG00016643 NA other downstream 707303 26582526 ~ 26592300 (-)
G14843 NA other downstream 727962 26568669 ~ 26571641 (-)
G15026 NA other upstream 56417 27369590 ~ 27370139 (-)
G15067 NA other upstream 88503 27401676 ~ 27403922 (-)
G15076 NA other upstream 111720 27424893 ~ 27428651 (-)
AMCG00016712 NA other upstream 816839 28130012 ~ 28157200 (-)
AMCG00016732 NA other upstream 1468299 28781472 ~ 28785507 (-)

Expression


Co-expression Network