AMCG00016673 (hoxb8,hoxb8ab,hoxb8aa)


Basic Information

Item Value
gene id AMCG00016673
gene name hoxb8,hoxb8ab,hoxb8aa
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27286874 ~ 27290861 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016673
tctctctctctctctctctctctctctctccctcttcctttctctttttctccctttttcattctctcactctctccataTCACAAGCGCGCAGTGCAGTGTCCGTGTGGAAATGCCGAAGCCAATGGGATGAGGATGCGATAATAGATGCAAATTATCGTGAAAAGACACTGCAAAATATGAAACAAGTCATTTGCGACGGAGTAAATCACAGAAAACTGTTTATGAACTGGCACCCCTTACTGGAATTGTAATGCAGGGACACTTGAGTAGCAGAGATTTTATGGAAGTCGGCGTGATAGTGGCTTGAAATTTTAAAAGGGTgcttaaaattaatacattaaaaaagataCTGGGAATCCTTGAGTGAGGGTTCTGCAAACCCCGAGAAAAAACGCGGTGCTCTTCTTGTTCCTCATATGAGAACCTGCGGCTCTTAAAGAcgaaacaaacaacagcaacaacaacaaaaagatgaGCTCATATTTTGTCAACTCTCTTTTCTCCAAATACAAAAGTGGCGATTCTCTACGTCCCAATTATTACGAGTGTGGGTTTGCACAAGACCTCGGAAGTAGACCCACTGTTGTTTATGGACCTGGTACCGGTGGAACTTTTCAACACCCATCTCAGATTCAGGAGTTTTACCACCACGGCGCTTCCACCCTCTCCACGACGCCTTACCAACAGAATCCCTGCGCCGTGACCTGCCACGGAGAGCCGGGCAATTTCTATGGATACGACGCTCTGCAAAGGCAAACGCTTTTCGGGACTCAAGATACAGATCTAGTCCAGTACAGCGACTGCAAGCTGGCAGCGAACAGCATTGGGGAGGAGACAGAAAGCACAGAGCAGAGCCCCTCTCCCACACAACTCTTCCCATGGATGAGACCCCAAGGTTACGTAACgtaa

Function

symbol description
hoxb8 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in negative regulation of myeloid cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including dorsal spinal cord development; embryonic skeletal system morphogenesis; and grooming behavior. Located in nucleoplasm.

NR:

description
PREDICTED: homeobox protein Hox-B8 isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K09308 HOX_8; homeobox protein HoxB/C/D8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016673 True 912 mRNA 0.46 2 27286874 27290861

Neighbor

gene id symbol gene type direction distance location
AMCG00016674 NA coding downstream 413 27286213 ~ 27286461 (-)
AMCG00016666 hoxb4,hoxb4ab coding downstream 38877 27247560 ~ 27247997 (-)
AMCG00016665 LOC105013251 coding downstream 67150 27217458 ~ 27219724 (-)
AMCG00016664 hoxb2 coding downstream 73952 27210523 ~ 27212922 (-)
AMCG00016667 NA coding downstream 91973 27187836 ~ 27194901 (-)
AMCG00016672 hoxb9ab,hoxb9,hoxb9a,LOC106600835 coding upstream 8742 27299603 ~ 27313173 (-)
AMCG00016669 hoxb13aa,hoxb13ab,hoxb13 coding upstream 47146 27338007 ~ 27339593 (-)
AMCG00016670 LOC106579309 coding upstream 80118 27370979 ~ 27375700 (-)
AMCG00016675 ttll6,LOC107582749,LOC107727303,LOC107666932 coding upstream 85104 27375965 ~ 27381088 (-)
AMCG00016681 snf8,LOC107734219,LOC107692042,LOC107554070,LOC107584075,LOC107660854 coding upstream 139241 27430102 ~ 27433860 (-)
G15001 hoxb5a,LOC104941372,LOC103365501,LOC108278507,LOC108413114 non-coding downstream 21271 27263713 ~ 27265603 (-)
G14999 NA non-coding downstream 41627 27243966 ~ 27245247 (-)
G14943 nfe2l1,nfe2l1b,LOC107565927 non-coding downstream 303388 26979158 ~ 26983486 (-)
G14882 NA non-coding downstream 544536 26741085 ~ 26742338 (-)
G14832 NA non-coding downstream 763827 26522804 ~ 26523047 (-)
G15016 hoxb9 non-coding upstream 5224 27296085 ~ 27308958 (-)
G15066 NA non-coding upstream 104258 27395119 ~ 27398583 (-)
G15071 NA non-coding upstream 122139 27413000 ~ 27413229 (-)
G15073 NA non-coding upstream 124792 27415653 ~ 27415892 (-)
G15074 NA non-coding upstream 125388 27416249 ~ 27416539 (-)
AMCG00016671 hoxb6ab,hoxb6,hoxb6a,LOC105013254,LOC103045875,LOC107582892 other downstream 7540 27265887 ~ 27279334 (-)
AMCG00016662 cbx1,cbx1b,LOC108279860 other downstream 283167 26995173 ~ 27003707 (-)
AMCG00016644 NA other downstream 643381 26626707 ~ 26643493 (-)
AMCG00016643 NA other downstream 694574 26582526 ~ 26592300 (-)
G14843 NA other downstream 715233 26568669 ~ 26571641 (-)
G15026 NA other upstream 78729 27369590 ~ 27370139 (-)
G15067 NA other upstream 110815 27401676 ~ 27403922 (-)
G15076 NA other upstream 134032 27424893 ~ 27428651 (-)
AMCG00016712 NA other upstream 839151 28130012 ~ 28157200 (-)
AMCG00016732 NA other upstream 1490611 28781472 ~ 28785507 (-)

Expression


Co-expression Network