AMCG00016675 (ttll6,LOC107582749,LOC107727303,LOC107666932)


Basic Information

Item Value
gene id AMCG00016675
gene name ttll6,LOC107582749,LOC107727303,LOC107666932
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27375965 ~ 27381088 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016675
ATGAAGGGGGCGACAGCGACAGCCAGGCTGAAACCTGCGAGCCCCAGCAGCAGCCAAGCACCGCTGATGgcaagaggaggaagaggaggaggaagaggtaTGCAGACAATGCTGGGCCTGCTCTATTGGGCCCAGTCCGTCCCAGCTGGGGCGGGGCAGGGTGGAGAGACAGCGGGCGGCGCCGTGCCTGACCGGCAGCCTCGGCTCCTCGGGTTACAGTACCTGTTCATAAAAGGGGCCTGGCGGAGCGGGACGCCCTCAGCAGAACAGACGATGAAAGAGCGTCACCCCAGAGAGGGGGGCACTCTGCTCTTAATGAGCAGAGCTAGAGCCTCCCCCCCAGCAGCTGCTGCAGTGACCCGGTGGCAAGAATCCCTCTGCAGTGTGCTGGGGGTCCAGAGAGTGGGGGGCCTCATGGGGAGTGGGTTGGTGCGCCGGGCAGCCAGGCGGTATGGGCTGCGGGAGGCAGGGGAAGGGGAGGACTGGACTCTGTACTGGACAGACTGCTCCGTGTCTCTGGACCGCGTCATGGACATGAAGCGCTACCAGAAGATCAACCACTTCCCTGGCATGAGTGAGATCTGCAGGAAGGACCTGCTGGCCAGGAACATGAACAGGATGCTGAAGCTCTTCCCCAAGGAATACAACATCTTCCCACGCACCTGGTGCCTGCCTGCCGATTACAGTGACTTCCAGGCCTACAGCCGTGCCAAGAAGCACAAGTCGTACATCTGCAAGCCGGACTCGGGCTGCCAGGGCCGCGGCATCTTCATCACACGCTCCGCAAAGGACGTCCGGCCCGGGGAGGACATGATCTGCCAGGTGTACATCTCCCGGTCAAACAGCATCGTACACATGCTTTAG

Function

symbol description
ttll6 Enables tubulin-glutamic acid ligase activity. Involved in protein polyglutamylation. Acts upstream of or within axoneme assembly and cilium movement. Located in cilium. Is expressed in lateral line; peripheral olfactory organ; and pronephros. Orthologous to several human genes including TTLL6 (tubulin tyrosine ligase like 6).

NR:

description
PREDICTED: tubulin polyglutamylase TTLL6

GO:

id name namespace
GO:0003341 cilium movement biological_process
GO:0018095 protein polyglutamylation biological_process
GO:0035082 axoneme assembly biological_process
GO:0036064 ciliary basal body cellular_component
GO:0005737 cytoplasm cellular_component
GO:0015631 tubulin binding molecular_function
GO:0070740 tubulin-glutamic acid ligase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016675 True 864 mRNA 0.62 6 27375965 27381088

Neighbor

gene id symbol gene type direction distance location
AMCG00016670 LOC106579309 coding downstream 265 27370979 ~ 27375700 (-)
AMCG00016669 hoxb13aa,hoxb13ab,hoxb13 coding downstream 36372 27338007 ~ 27339593 (-)
AMCG00016672 hoxb9ab,hoxb9,hoxb9a,LOC106600835 coding downstream 62792 27299603 ~ 27313173 (-)
AMCG00016673 hoxb8,hoxb8ab,hoxb8aa coding downstream 85104 27286874 ~ 27290861 (-)
AMCG00016674 NA coding downstream 89504 27286213 ~ 27286461 (-)
AMCG00016681 snf8,LOC107734219,LOC107692042,LOC107554070,LOC107584075,LOC107660854 coding upstream 49014 27430102 ~ 27433860 (-)
AMCG00016688 nr1d1,LOC102302421 coding upstream 128557 27509645 ~ 27516973 (-)
AMCG00016692 NA coding upstream 262551 27643639 ~ 27650849 (-)
AMCG00016693 LOC107388104 coding upstream 274660 27655748 ~ 27669412 (-)
AMCG00016694 LOC105013104 coding upstream 319924 27701012 ~ 27707529 (-)
G15016 hoxb9 non-coding downstream 67007 27296085 ~ 27308958 (-)
G15001 hoxb5a,LOC104941372,LOC103365501,LOC108278507,LOC108413114 non-coding downstream 110362 27263713 ~ 27265603 (-)
G14999 NA non-coding downstream 130718 27243966 ~ 27245247 (-)
G14943 nfe2l1,nfe2l1b,LOC107565927 non-coding downstream 392479 26979158 ~ 26983486 (-)
G14882 NA non-coding downstream 633627 26741085 ~ 26742338 (-)
G15066 NA non-coding upstream 14031 27395119 ~ 27398583 (-)
G15071 NA non-coding upstream 31912 27413000 ~ 27413229 (-)
G15073 NA non-coding upstream 34565 27415653 ~ 27415892 (-)
G15074 NA non-coding upstream 35161 27416249 ~ 27416539 (-)
G15075 NA non-coding upstream 43466 27424554 ~ 27424821 (-)
G15026 NA other downstream 5826 27369590 ~ 27370139 (-)
AMCG00016671 hoxb6ab,hoxb6,hoxb6a,LOC105013254,LOC103045875,LOC107582892 other downstream 96631 27265887 ~ 27279334 (-)
AMCG00016662 cbx1,cbx1b,LOC108279860 other downstream 372258 26995173 ~ 27003707 (-)
AMCG00016644 NA other downstream 732472 26626707 ~ 26643493 (-)
AMCG00016643 NA other downstream 783665 26582526 ~ 26592300 (-)
G15067 NA other upstream 20588 27401676 ~ 27403922 (-)
G15076 NA other upstream 43805 27424893 ~ 27428651 (-)
AMCG00016712 NA other upstream 748924 28130012 ~ 28157200 (-)
AMCG00016732 NA other upstream 1400384 28781472 ~ 28785507 (-)
AMCG00016740 ormdl3,LOC108273759,LOC107723636,LOC107657273,LOC107556587,LOC102217224,LOC106521946 other upstream 1820784 29201872 ~ 29225587 (-)

Expression


Co-expression Network