AMCG00016677


Basic Information

Item Value
gene id AMCG00016677
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27393958 ~ 27403922 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016677
ATGAGCGAGGGCACAGGAGAGCCCCCGACGTCCACCGTCATGACGTCTTCAGCCAACTACTCGCAGGTGCTCTTCAACAACGTGAGCCAGGCCTATGCGCCCGACACCGTCCTGAGCTGCAGCTACACTGTAACCCCGCAGCTCATCCCGCACCGCCGCGACTGGATCGGCATCTTCAAGGTCAGTGTCCTGGACACctccaCCTACTACCTGCCGAAGGAGGATGGTGAATTCTACCAGTTCTGCTATGTGGACAGTAATGGGGGGGTGAGGGGAGCTAGCACGCCATTCCGCTTCCAGAGCCTCACCATCAACAGCCTGGAGACCGACCTGCTGGTCATCACCACACAGGACTCCAGTAATGAGCTGGGGAAGACCATGAAGATGCTGAagcaggagagggaggaggagagagagcagtggaggagagagagagaggaagagagaaagcactgggagaccgagagagagggggagcggGTGCTgtgggacagagagaaagaggccATCATGGCACAGTGTGGGGACAAGCAGGACAGCCTGTCCAAAACGGAGCAGGAGAGCATcctcagacagagagaggtgaGGAGGACAGTGGGCTGGGAGGTCCGCAGCGCCCGCAGGgagctgcaggagagcCTGGTGTCCCAGCAGGGGAAGATGGAGCGGACCTTGGCCAAGGTGGCCCAACTGCGGCAGGAGAGGGAGGAACTGCGGGGCAAGACAGAGACCCAGGAGGCCGAGATCACGCGCCTGACGGGGACGGTGCGGAAGCTGCAGCAGGACAAGCAGCAGGCCTTCGAGGAGCAGAGGAGGCTGCAGGACCAGATACAGCTGCTGCAGgtGGACCTGCAGAGCTCTCAGAAGGAGGCAGTGAAGCTGTCTGGGGAGTTGCGGGCGGCTCGGGCGGTATCCGAGGGGATAGAGGGGCTGCGCAGGGAGAACCGGGATCTGAAGAGGAGCCTCTCAGAGAGGGAGGACAACATGGGGCATGGGGACACAGAGAACGAGGGCCTGTCCAGGCagctgcaggagctgcaggTGCAGAAGGAGCAGATGGAGCAGCAGCTGCGGGAGCTGCAGGGGGAGCTGCACGTGCAGAAGGAGCAGGGGGAGCAGCGGCTGCGGGAGCTGCAGGGGGAGCTGCGCGCGCAGAGGGAGCAGGAAGAGCAGCGGCTGCGGGATGTTGGGCAGAAGGCAGAGGAAGCACACGATCAGCTGGAGTACTGGAAAAAGGGCTTCGAGAAGGTCAAGGAACAGGGCTGCAAGGTGGAGATCCAGTTGACTGAGGTGAGGCAGGAGCTGGAGAACCGAACCATGGAGTTCGAAATCCTGAAGCAGGAGAAGGAGGAACTGACAGATGAGAACGAGGGCCTGCGGAGAGACATGAAGAGACTGCGGCAGCAGATGTCTGCTCGCCAGCCCTCCCCCCAGCCCAGCATCTCCCTGCTGTACTCCAACCCGTACAGCATCCCCCCTGTGCCCACGACCGGCCTGTATGAAAGCCCTGATCTCCGCTACAGGCAGAGGGTCCATGAAGGAGCTCCTGTGAGCGGTGGATGCAGAGGGCCGTTCGAGAGCCTGCGTCTCTGCTCCTTCGCCGCTCTGAAGCTGAAATGGGGTGTGAAGACGCAGGCAGGGGGCTCAATGGAGGCGGTGAGACAGTGCCAGTTCTGCAGAGAGCTGTTCCCCGGCATCAGCATAACAGAGCTGGACACTCATGAGCAGAGCCACAAGGTGTGCCCGTACTGCAGCCTGCTGTGTGACCCCATGACCCAGCAGCAGTTCGAGGAGCACGTGTACAGTCACGGGGACTAGCCCCCTGCGCACTGGTGTGAGCTACAAGAAAGGGCCAGGCTGTGGCGTTGGAGTCTGCTGCTCTCCGTACTCGGCTTCTTGTTGCCTGCATATTACACATAATCACTGTGCGCGGCTGTGAGCGGCGTGCCACAGCTCCCTTCAGCTCGAGGCTCTTCGCTGCACTGTCTCTGTCGGCGGCTGAATTATATTGATCTTTGCTGGTATCCTAGATGAAGCAGAAACTGTTTTAATCATAATGTAAATTGATGAACTTCGTGTAGAACAACCTGACACTGTGATGGGTCAGGCGTGTGCAGCCTGCCCCCTGCGCCGCAGCACGCTCCTCACCGGTTGTTTGACGTTTATTATTTCCAGATTTGCGTGTCAGTTCTCATTACATCCGGtttaattaaggaaaatattagGTGACTGCAATAGGGTTCAGGAACTTGAATATAAACGCAATCAGCTTTGAAAATTCTACTCTGTGGTATATCACTGCTGTTATAATTCCACATTGTAATTATGAATTCTGGAATGTGTATTCTCTGTTCTGTTCCTTGTGTGTCACACTGTGCAATAAATGGCTTGGTTTCAAAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016677 True 2402 mRNA 0.58 11 27393958 27403922

Neighbor

gene id symbol gene type direction distance location
AMCG00016668 NA coding upstream 29010 27358778 ~ 27364948 (+)
AMCG00016660 NA coding upstream 384217 26999267 ~ 27009741 (+)
AMCG00016661 nfe2l1 coding upstream 403645 26977195 ~ 26990313 (+)
AMCG00016655 NA coding upstream 475190 26911968 ~ 26918768 (+)
AMCG00016654 NA coding upstream 496424 26893279 ~ 26897534 (+)
AMCG00016680 NA coding downstream 1486 27405408 ~ 27405728 (+)
AMCG00016676 atp5g1,LOC107740625,LOC106600830 coding downstream 2809 27406731 ~ 27409921 (+)
AMCG00016678 NA coding downstream 10288 27414210 ~ 27416010 (+)
AMCG00016679 NA coding downstream 21758 27425680 ~ 27427034 (+)
AMCG00016682 igf2bp1,LOC108412303,LOC107585078,LOC107740658,LOC107717213 coding downstream 46082 27450004 ~ 27451999 (+)
G15025 NA non-coding upstream 23820 27369589 ~ 27370138 (+)
G15005 hoxb7a,hxb7a,hoxb7,hoxb7ab non-coding upstream 111389 27281424 ~ 27282569 (+)
G14992 NA non-coding upstream 119661 27262890 ~ 27274297 (+)
G14803 NA non-coding upstream 678157 26715569 ~ 26715801 (+)
G14802 NA non-coding upstream 680829 26712231 ~ 26713129 (+)
G15224 NA non-coding downstream 712996 28116918 ~ 28117190 (+)
G15226 NA non-coding downstream 714621 28118543 ~ 28119649 (+)
G15253 NA non-coding downstream 756743 28160665 ~ 28160887 (+)
G15270 NA non-coding downstream 821920 28225842 ~ 28230979 (+)
G15328 NA non-coding downstream 1031062 28434984 ~ 28435256 (+)
AMCG00016663 NA other upstream 400010 26966297 ~ 26993948 (+)
AMCG00016635 NA other upstream 736533 26600093 ~ 26657425 (+)
AMCG00016638 krt222 other upstream 845746 26527319 ~ 26548212 (+)
AMCG00016640 NA other upstream 894716 26489938 ~ 26499242 (+)
AMCG00016633 NA other upstream 960302 26427339 ~ 26433656 (+)
AMCG00016683 NA other downstream 138564 27542486 ~ 27553120 (+)
AMCG00016691 NA other downstream 184557 27588479 ~ 27604879 (+)
AMCG00016690 NA other downstream 209183 27613105 ~ 27626090 (+)
AMCG00016699 LOC106607176 other downstream 373505 27777427 ~ 27799126 (+)
AMCG00016705 NA other downstream 425346 27829268 ~ 27833537 (+)

Expression


Co-expression Network