Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00016678 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030122.1 |
| NCBI id | CM030122.1 |
| chromosome length | 54868152 |
| location | 27414210 ~ 27416010 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0006915 | apoptotic process | biological_process |
| GO:0008152 | metabolic process | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0005524 | ATP binding | molecular_function |
| GO:0004842 | ubiquitin-protein transferase activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00016678 | True | 936 | mRNA | 0.63 | 2 | 27414210 | 27416010 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00016676 | atp5g1,LOC107740625,LOC106600830 | coding | upstream | 4289 | 27406731 ~ 27409921 (+) |
| AMCG00016680 | NA | coding | upstream | 8482 | 27405408 ~ 27405728 (+) |
| AMCG00016677 | NA | coding | upstream | 10288 | 27393958 ~ 27403922 (+) |
| AMCG00016668 | NA | coding | upstream | 49262 | 27358778 ~ 27364948 (+) |
| AMCG00016660 | NA | coding | upstream | 404469 | 26999267 ~ 27009741 (+) |
| AMCG00016679 | NA | coding | downstream | 9670 | 27425680 ~ 27427034 (+) |
| AMCG00016682 | igf2bp1,LOC108412303,LOC107585078,LOC107740658,LOC107717213 | coding | downstream | 33994 | 27450004 ~ 27451999 (+) |
| AMCG00016686 | LOC101072148 | coding | downstream | 68623 | 27484633 ~ 27496345 (+) |
| AMCG00016684 | NA | coding | downstream | 89179 | 27505189 ~ 27508236 (+) |
| AMCG00016685 | NA | coding | downstream | 112816 | 27528826 ~ 27538723 (+) |
| G15025 | NA | non-coding | upstream | 44072 | 27369589 ~ 27370138 (+) |
| G15005 | hoxb7a,hxb7a,hoxb7,hoxb7ab | non-coding | upstream | 131641 | 27281424 ~ 27282569 (+) |
| G14992 | NA | non-coding | upstream | 139913 | 27262890 ~ 27274297 (+) |
| G14803 | NA | non-coding | upstream | 698409 | 26715569 ~ 26715801 (+) |
| G14802 | NA | non-coding | upstream | 701081 | 26712231 ~ 26713129 (+) |
| G15224 | NA | non-coding | downstream | 700908 | 28116918 ~ 28117190 (+) |
| G15226 | NA | non-coding | downstream | 702533 | 28118543 ~ 28119649 (+) |
| G15253 | NA | non-coding | downstream | 744655 | 28160665 ~ 28160887 (+) |
| G15270 | NA | non-coding | downstream | 809832 | 28225842 ~ 28230979 (+) |
| G15328 | NA | non-coding | downstream | 1018974 | 28434984 ~ 28435256 (+) |
| AMCG00016663 | NA | other | upstream | 420262 | 26966297 ~ 26993948 (+) |
| AMCG00016635 | NA | other | upstream | 756785 | 26600093 ~ 26657425 (+) |
| AMCG00016638 | krt222 | other | upstream | 865998 | 26527319 ~ 26548212 (+) |
| AMCG00016640 | NA | other | upstream | 914968 | 26489938 ~ 26499242 (+) |
| AMCG00016633 | NA | other | upstream | 980554 | 26427339 ~ 26433656 (+) |
| AMCG00016683 | NA | other | downstream | 126476 | 27542486 ~ 27553120 (+) |
| AMCG00016691 | NA | other | downstream | 172469 | 27588479 ~ 27604879 (+) |
| AMCG00016690 | NA | other | downstream | 197095 | 27613105 ~ 27626090 (+) |
| AMCG00016699 | LOC106607176 | other | downstream | 361417 | 27777427 ~ 27799126 (+) |
| AMCG00016705 | NA | other | downstream | 413258 | 27829268 ~ 27833537 (+) |
