AMCG00016681 (snf8,LOC107734219,LOC107692042,LOC107554070,LOC107584075,LOC107660854)


Basic Information

Item Value
gene id AMCG00016681
gene name snf8,LOC107734219,LOC107692042,LOC107554070,LOC107584075,LOC107660854
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27430102 ~ 27433860 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016681
CTTTCAGCAGAGGGGTTTGCTCTCACCCAAGATGGCGGACTGACATCTCTCTCAGCTGCGCAGCCGCGCTACTCTATCCGCGGTACAGGAAGACGTCATCAGCTCTTTCCTGCCTCTGATGCTCAACGTAAACATTCTCAGAAAGAGACAACCAGGAAGCGGCAGCAGATTTTCTTTTCGATTATATTTCTAGATGTATAATCTTTGCCAAAAATTAGAGCAAAGATAATCCGAAGAAActaacaaatttaaaaatgaacccGCAGCAGTATAATCATGCAGTGACGGATCGGTGCATCGGTGATGTGTTGAGCAGTTCACACACGGAGATCAGAGAATAACGCCTGTTATTAacgatttatttatattaacgATTTATTTTGAGCACACCGGCAAGATGCACCGAAGGGGAGTGGGGGCCGGGGCGATTGCCAAGAAAAAGCTCGCAGAGGCAAAGTACAAGGAGCGGGGGACAGTGCTGGCGGAGGACCAGATTGTGCAGATGTCGAAACAGCTGGAGACGTTTAAAACACACCTGGAGGAGTTCGCCAGCAAACACAAGCAGGAGATCCGCAAGAGCGCCCAGTTCCGAGTGCAGTTTCAGGAGATGTGCGCCACCATCGGGGTCGACCCTCTCGCCTCTGGGAAGGGTTTCTGGTCAGAGATGCTGGGCGTGGGGGACTTCTACTACGAGCTGGGGGTCCAGATCATCGAAGTGTGCCTGGCTCTGAAACACAGGAATGGGGGACTGATCACCCTGGATGAGCTCCACCAAAGGGTCCTGAAGGGGAGGGGCAAGTTCGCCCAGGATGTCAGTCAGGATGACCTGATGCGTGCCATCAAAAAGCTGAAGGCGATGGGCACGGGGTTCGGGATGATCCCGGTGGGCGGCTCCTACCTGGTGCAGTCCGTCCCGGCAGAGCTCAACATGGACCACACAGTGGTGCTGCAGCTGGCTGAGAAAAAGGGCTATGTGACGGTGAGCGAGATCAAGGACAACCTGAAGTGGGAGAAGGAGCGAGCCGGACATGTACTGGATCACCTGTTGAAGGAGGGGCTGGCATGGCTGGACAGCCAAGCGGGGGGGGAGCCGCAATATTGGCTGCCTGCTCTCTTCTCCGAGCTGTACTCCTGTGATGTCAGCCCCGAGGAGGCCAATCAGATGGTGCCGTGAGGAGTAGGGTGGGGCAATGCAAAGCACAGCTTTCTGACAGTCACAGAGACACTCAAGACTGTTCATCTCATACTTCGTGAGCCACATGTGCCGAAGAAGGAACCATATTACTACTTAACATCAGGGGAAGTGTCTGGAAAAAgggatttaaataataaaaacaactttttgtaaataa

Function

symbol description
snf8 Predicted to be involved in protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway. Predicted to act upstream of or within multivesicular body sorting pathway and protein transport. Predicted to be located in cytoplasm. Predicted to be part of ESCRT II complex. Orthologous to human SNF8 (SNF8 subunit of ESCRT-II).

NR:

description
vacuolar-sorting protein SNF8

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K12188 SNF8, EAP30; ESCRT-II complex subunit VPS22

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016681 True 1352 mRNA 0.52 9 27430102 27433860

Neighbor

gene id symbol gene type direction distance location
AMCG00016675 ttll6,LOC107582749,LOC107727303,LOC107666932 coding downstream 49014 27375965 ~ 27381088 (-)
AMCG00016670 LOC106579309 coding downstream 54402 27370979 ~ 27375700 (-)
AMCG00016669 hoxb13aa,hoxb13ab,hoxb13 coding downstream 90509 27338007 ~ 27339593 (-)
AMCG00016672 hoxb9ab,hoxb9,hoxb9a,LOC106600835 coding downstream 116929 27299603 ~ 27313173 (-)
AMCG00016673 hoxb8,hoxb8ab,hoxb8aa coding downstream 139241 27286874 ~ 27290861 (-)
AMCG00016688 nr1d1,LOC102302421 coding upstream 75785 27509645 ~ 27516973 (-)
AMCG00016692 NA coding upstream 209779 27643639 ~ 27650849 (-)
AMCG00016693 LOC107388104 coding upstream 221888 27655748 ~ 27669412 (-)
AMCG00016694 LOC105013104 coding upstream 267152 27701012 ~ 27707529 (-)
AMCG00016695 NA coding upstream 298455 27732315 ~ 27738429 (-)
G15075 NA non-coding downstream 5281 27424554 ~ 27424821 (-)
G15074 NA non-coding downstream 13563 27416249 ~ 27416539 (-)
G15073 NA non-coding downstream 14210 27415653 ~ 27415892 (-)
G15071 NA non-coding downstream 16873 27413000 ~ 27413229 (-)
G15066 NA non-coding downstream 31519 27395119 ~ 27398583 (-)
G15079 NA non-coding upstream 101465 27535325 ~ 27541840 (-)
G15095 NA non-coding upstream 116452 27550312 ~ 27553162 (-)
G15165 NA non-coding upstream 360732 27794592 ~ 27794980 (-)
G15166 NA non-coding upstream 362923 27796783 ~ 27797008 (-)
G15172 NA non-coding upstream 368269 27802129 ~ 27805042 (-)
G15076 NA other downstream 1451 27424893 ~ 27428651 (-)
G15067 NA other downstream 26180 27401676 ~ 27403922 (-)
G15026 NA other downstream 59963 27369590 ~ 27370139 (-)
AMCG00016671 hoxb6ab,hoxb6,hoxb6a,LOC105013254,LOC103045875,LOC107582892 other downstream 150768 27265887 ~ 27279334 (-)
AMCG00016662 cbx1,cbx1b,LOC108279860 other downstream 426395 26995173 ~ 27003707 (-)
AMCG00016712 NA other upstream 696152 28130012 ~ 28157200 (-)
AMCG00016732 NA other upstream 1347612 28781472 ~ 28785507 (-)
AMCG00016740 ormdl3,LOC108273759,LOC107723636,LOC107657273,LOC107556587,LOC102217224,LOC106521946 other upstream 1768012 29201872 ~ 29225587 (-)
G15706 NA other upstream 2767599 30201459 ~ 30202351 (-)
G15787 NA other upstream 3092432 30526292 ~ 30529500 (-)

Expression


Co-expression Network