AMCG00016683


Basic Information

Item Value
gene id AMCG00016683
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 27542486 ~ 27553120 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016683
ATGGCGGACAGGCGGCGGCGACGGAAGCGCGCGTCTCAAGACAGCGAGGAAGAGGACGAGTCCGGCTCCGGCACCGAGAGCGCAGCGTCCGGCCCGGCGGTGGTGAAACCCCGGGCTCGGGAACCCGAACCGCCGGTGGTGCCCTGCGTCCGTGTGCGAGCGAAGAGCGACGAGGAGTcggagtgtGAGAGTGAAGATGGCATAGGAGATgCAATCCTGTCCGATTACGAGAGCGCCGACCCTGAGGAGAACGGCTCTCACTCAGAGGGCGAGGAGGAGGTGGCCTTCACTGATGAGGAGGCATCCAAGCCCCCAGCCGAGCCCAAGCCCTCCGAACCCGAGCCTGCCGACGAGGTGGACGAGGCGGATGAGGTGGAGGGAGAAGGACGGAGCAAGGAGGTGAAATCGGAGGAGAAGGGGGACCTGGCAGGAGAGAGGCAGAGTGGGGATGGACAGgAGAGCACAGATGATACGGAGAACAAGTCCGGCAGCAATACGGGTAAAAAGTTGGACGATGACGAGGATCGGAAGAACCCGGCCTACATCCCACGCAAGGGTCTGTTCTTCGAGCACGATGTCCGTGGCCAGGCGCAGGACGACGACATCCGGCCAAAGGGGCGCCACAGGAAGCTGTGGAAGGACGAGGGACGCTGGGTACATGACAAGTTCCGGGAGGACGAACAGGCACCCAAGTCCCGCGACGAGCTGATCGCCATGTATGGCTACGACATCCGCAACGCCAATGGCCCCTCAGATAGCCGGGGCTCCCGCTCCCGCAAGCCCAGGTACGGCAGTCCACCCGGGCGGGACCGCAGGTGGCGAGACGGGGAAAAGCCCAGTCGGTCATCATGGCACGGAGGTGTGAACAACACCCCCCCAGCGGTCTCTACACAGCCTGTGGCCCCCGCCTCCTCAGGCCCCGCAGTGCGGAGTCATGTCAGCAGCAGGAACTCAGCGGGAGGCTCAGGTCGCGTGGCCCCGCCTCCCCAGCCACGCAGCTTCCAGAACAGCCGGCCGCCAGCCTCCTACCGGGAAGGCCGCACAAACTATAAACTTGCGGACGATGGCAGCCACCACCACTACGGGGGCGGAGGGTACCGGGGGGTTTATCCAGAGAGTGAGAGGGGCCACGGGCGGCGGGGTGGCGGCAGCTTTGACTCAGAGCGTGGGCCCTCAGTCGTGGTGGAGGACGTGCacagcgaggaggaggagaggggtggtggggggagctACCATGGGAAACCCGACAGGGACTCGGCGCCACCCCGGCGGGAGGAGGTGACCGCTGTGCCTCCTGCTGCTGCGGCTCCCGAAACGGTTTTCACCCGGGACGCCTCGCCAGCCGCCCCGGCCGTGCCCGAGAGGACGGTGGAGAAGAAGTCCTATTCCCTGGCGCGCAGGACTCGCAGCCGTGCCCCCGAGCTCAGCAAGCAGGCCTCCCTGGAGGAGCCGGCGGCCACGCAGCCGCCACCTCAGCCCCCTCCCGGCTCCTCGCCTGCGGGAGGGGACAGGGGGCAGTCCGGGCCAGCCACCCCCACTGCGCAGAAGcagcccccccctccccacggCCCCGTGAAGACGGAGTCCTGGGAGCCGCCCGTGGAGAGCAGCAACCTGGACCAGGACCTGGCGCGGCTCAGCCTGGCTGGGCAGGGTTGGGCCCACAGCCCGCCCACCTACCTGCCTGGGGAGATGAGGGgCATTTCCAACCCCTTGCACATAGCAGGCGCCCCCCCACAGTACAGCAGGATAGAAGAGATGGGTGTTGGGGGTGGCAGGGCAAAGCGTTACTCCTCACAGCGCCAGCGGCCGGTGCCTGAGCCCGCGCCCATGCACATCGGCATCATGGAGGGCCACTACTACGACCCCATGTCTTTCCAAGGACCAATCTATGCTCACAGTGAGAGCTCTGCCCCCCTGCCGCCCCAGGGCATGCTGGTCCAGCCTGAGATGCACATCACACACCCGGGTCTGCACCCTCACCAGTCTGGCGCCCCTCTCCCCAACCCTGCGCTGTATCCTGGCCCACCGGTCTCCATATCGCCCGGGCAGCCACCCCCTCAGCAGCTGCTGGCGCCCGCCTTCTACCCCCCTCCTGGGGTCATGACCTTCGGCAACACAAATTTCCCCTATCCTGCGAGCGCCACTCTGCCGCCCCTCTACACCAACCCCCAGGTTGAGAGGAACCGGCTGGCACAAGAGGAGAGGATGGGCTCCTAGCTCAGTGTACTGAACAGCCAGCAGCGCGCAGAAGAAAcccagttttccttttttgttttggaagatgAAAGAACAAAACGCACCCAACAAATCTAAAGCACGCTTTCTCCCAAGCCTTCATAGTGCAAACCCTCTTCATTAAGAAAGTGTTAGTCTTGTGTTCAGGTGTGGAGGGGCGAGAGTCGCGACATTGCTGTAGCAGACGGCCTGTTTGAGCCCGGTGGCCCGTGTTCCCCTGGTGCTAGTGAGTGACCGGACGGACCTGATGTGTCCTGGCTCTGTCCCTGCTAGGCTCCCTCTGCTGGCTTAACATGGCATAGCGTCTTATCCTTTACTTGAGGATCAGTTTGAGCAAAACCTAATGTTTCATTTAAGAGCAATCACTTAATGTTTCCTAAGTGGCtgaatttttatatttatatttaatttggattaatTGTTTCCTTGATTTAGCAGAAATGAACTACATCAAATATGCAGTGTTCACGAATGTCagttttatccccccccccccattaccCAGAAGCCCTCTGGTGTAGCTAGACCTGGGACCAGCCTACAGCCCTTCTGTTCTCGCATCtcggaaaaacaaataatgaaaaaatgtacaCAGGGCTCGACTGGCAGAGCATAGTGCGTAATCCCTACATCCGAGGCCAACTCCCACGTGTGAGAGTCTTAAACGCCATGTGAAGATTTTGCAGTTGAATGGCACTGATGGGTTTGGAGAAACACCCCCCCGGCTGTAGTCGGCCCTGGAGCTCAGATGATTGGCGGGCCGGACCAGACTTCTTTCATTCAGGAGGTGTGCTGCAgtttaattcgttttttttttctttattattatttcttaatgtaaCCACTTACTGTCTGCTGCGaggcgtggggggggggggNNNATATGTTTCTGAATTCCAGTTGTTCCTGGTCACTGAAGGTCTGTGACCACCGGGCCCGTGGTCAGTCGCACACCTAGCTGGCGTTGAGGGAGAGGTCCCGATCCACTCCTCGAGCATTGCACGCTGTATAAACCCTCAGCAGGACCATagaattttttaattttttatgtatgtatgaaaaaatgttttattttttattttttttattacattgagTGTATGAGTCTAAACAAAAGGAATAAGTCACGGATGTCTCCAGAGATTCGCAGAGGCTAACTTTCACTCTGCCACTGCTTTTCAAGGGCCCCCACTCACCTCTCGGTGAGGAATGGATTAAAACGCGATAAGACTACTTCGGTTTAGTAATTCTGGGCCTCCTGTGGCCCTCGGAGTGCAGCAGCCCAGCCCTGCCCTTGGAGTGCAGCGCTACAGAGGTGGCAGTGGACTCGACAGCGCTTAACTTCTCTTGTTGGGATCTGGCTCTGTGCTTGAGAAGaagaaacaattatttgaaaatattcattGTCCCAGCAGACTTGTACGGTGCTTGGGCCAAAGTCTCTGGTGGGCACAATGGTCACTGCACCCTCTGGCCTCCACTGTAGCTGTAATTGTTCTTGTGCACAGGGTGTTTGCGAGACTGTCTGCCTCCTCTACTGGCCCAGCTGTTGATTTTTGCAGCAGCTTTTGTTGGACCTCCTCCTGACGTGTCTAGGGGGTCGGAGCTGTGGCCAGTGGGAATAGTTTTTAGCGTTATTTCGCTGCAGGCGTTAAACCGCTTGCCTTGGTGGGAAGAGTGTAGATGTGTGATTTTGGTTGTGGGAAGAATGATTAcctgtttattataatttattttttagatggATTTTCGTTCCTTTTTTCCAGTGGAAATGAATGTTTTTCATTGCGAGACCCTTCTGTGCATCGGGGGAGTGAAGGGTGGAGTGGGGGTCTCCTGTCCACAACTAGCTGCAGTTGGGCTGGGAAGTACTCCCATGTTCAGTGACTGAAGTGCAGCTCCTCACACTCTCCTTCTCCGCAGACCTTGCTTGCATGCACACAGACCTGTACAGGACAAGAATAACGTGCACACTTTCATCGTTCCTTCTGTTTGAACTAGGTGGGGGAGGGCAGAGCTCTAGGCTATTATCAAAAATAAACCCTAGGAATGacctttcatttgttttttttacactaaACGCAACCTGACAATATTAagtattattgatttaaaggtatttttgttcttaatgtTACATTGTTTCAAGAAGGAAACGTCTACTTTCTCTGCCTTAAAGATTGGATCCATGTCTTGTTGGTTTTACATATCAGTTGAATTTCTCTCTAGACCAGTTAACACTGTGATGGCTTGTGTATTTTATAGGtgtgaatttgtaatattttctttgtggAGAAACGGtggagaaaaaattaaaaataacaattgaaaAATGCAGTTTGTCTTGTCAGCAGtattttttggggtggggggggcaggacGCTCTGCCGCAGCTGCCCCTGCAGTCAGTCCGCAGTCTGCCCGCCGGCCGCTAGGGGGCGGCTTTGCGCACGAATGTTCAAATGCGAGGGCAATGACCGGGGGTTGCGCTTGTGGTCGTTAGAAGAAACCCAAAAACCGCACGGATACGAAACGAAACTCTTGTTCACGATCATAAGTAAATGCAATTCTCGGCGGCTTACTGTAAA
>TU18699
GAGGACGAGGTGGACGAGGCGGATGAGGTGGAGGGAGAAGGACGGAGCAAGGAGGTGAAATCGGAGGAGAAGGGGGACCTGGCAGGAGAGAGGCAGAGTGGGGATGGACAGgAGAGCACAGATGATACGGAGAACAAGTCCGGCAGCAATACGGGTAAAAAGTTGGACGATGACGAGGATCGGAAGAACCCGGCCTACATCCCACGCAAGGGTCTGTTCTTCGAGCACGATGTCCGTGGCCAGGCGCAGGACGACGACATCCGGCCAAAGGGGCGCCACAGGAAGCTGTGGAAGGACGAGGGACGCTGGGTACATGACAAGTTCCGGGAGGACGAACAGGCACCCAAGTCCCGCGACGAGCTGATCGCCATGTATGGCTACGACATCCGCAACGCCAATGGCCCCTCAGATAGCCGGGGCTCCCGCTCCCGCAAGCCCAGGTACGGCAGTCCACCCGGGCGGGACCGCAGGTGGCGAGACGGGGAAAAGCCCAGTCGGTCATCATGGCACGGAGGTGTGAACAACACCCCCCCAGCGGTCTCTACACAGCCTGTGGCCCCCGCCTCCTCAGGCCCCGCAGTGCGGAGTCATGTCAGCAGCAGGAACTCAGCGGGAGGCTCAGGTCGCGTGGCCCCGCCTCCCCAGCCACGCAGCTTCCAGAACAGCCGGCCGCCAGCCTCCTACCGGGAAGGCCGCACAAACTATAAACTTGCGGACGATGGCAGCCACCACCACTACGGGGGCGGAGGGTACCG
>TU18707
GGCGGACAGGCGGCGGCGACGGAAGCGCGCGTCTCAAGACAGCGAGGAAGAGGACGAGTCCGGCTCCGGCACCGAGAGCGCAGCGTCCGGCCCGGCGGTGGTGAAACCCCGGGCTCGGGAACCCGAACCGCCGGTGGTGCCCTGCGTCCGTGTGCGAGCGAAGAGCGACGAGGAGTcggagtgtGAGAGTGAAGATGGCATAGGAGATgCAATCCTGTCCGATTACGAGAGCGCCGACCCTGAGGAGAACGGCTCTCACTCAGAGGGCGAGGAGGAGGTGGCCTTCACTGATGAGGAGGCATCCAAGCCCCCAGCCGAGCCCAAGCCCTCCGAACCCGAGCCTGCCGTNNN

Function

GO: NA

KEGG:

id description
K14323 CASC3, MLN51; protein CASC3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016683 True 4826 mRNA 0.56 14 27542486 27553120
TU18699 False 755 TUCP 0.43 4 27545994 27547609
TU18707 False 351 lncRNA 0.36 4 27542488 27544996

Neighbor

gene id symbol gene type direction distance location
AMCG00016685 NA coding upstream 3763 27528826 ~ 27538723 (+)
AMCG00016684 NA coding upstream 34250 27505189 ~ 27508236 (+)
AMCG00016686 LOC101072148 coding upstream 46141 27484633 ~ 27496345 (+)
AMCG00016682 igf2bp1,LOC108412303,LOC107585078,LOC107740658,LOC107717213 coding upstream 90487 27450004 ~ 27451999 (+)
AMCG00016679 NA coding upstream 115452 27425680 ~ 27427034 (+)
AMCG00016687 rapgefl1 coding downstream 23413 27576533 ~ 27584981 (+)
AMCG00016689 NA coding downstream 54096 27607216 ~ 27610772 (+)
AMCG00016696 NA coding downstream 211454 27764574 ~ 27764813 (+)
AMCG00016698 lsm12,LOC107708984,LOC107562026,LOC107693683 coding downstream 257528 27810648 ~ 27817193 (+)
AMCG00016697 NA coding downstream 269553 27822673 ~ 27823994 (+)
G15025 NA non-coding upstream 172348 27369589 ~ 27370138 (+)
G15005 hoxb7a,hxb7a,hoxb7,hoxb7ab non-coding upstream 259917 27281424 ~ 27282569 (+)
G14992 NA non-coding upstream 268189 27262890 ~ 27274297 (+)
G14803 NA non-coding upstream 826685 26715569 ~ 26715801 (+)
G14802 NA non-coding upstream 829357 26712231 ~ 26713129 (+)
G15224 NA non-coding downstream 563798 28116918 ~ 28117190 (+)
G15226 NA non-coding downstream 565423 28118543 ~ 28119649 (+)
G15253 NA non-coding downstream 607545 28160665 ~ 28160887 (+)
G15270 NA non-coding downstream 672722 28225842 ~ 28230979 (+)
G15328 NA non-coding downstream 881864 28434984 ~ 28435256 (+)
AMCG00016663 NA other upstream 548538 26966297 ~ 26993948 (+)
AMCG00016635 NA other upstream 885061 26600093 ~ 26657425 (+)
AMCG00016638 krt222 other upstream 994274 26527319 ~ 26548212 (+)
AMCG00016640 NA other upstream 1043244 26489938 ~ 26499242 (+)
AMCG00016633 NA other upstream 1108830 26427339 ~ 26433656 (+)
AMCG00016691 NA other downstream 35359 27588479 ~ 27604879 (+)
AMCG00016690 NA other downstream 59985 27613105 ~ 27626090 (+)
AMCG00016699 LOC106607176 other downstream 224307 27777427 ~ 27799126 (+)
AMCG00016705 NA other downstream 276148 27829268 ~ 27833537 (+)
AMCG00016706 LOC102299446 other downstream 283393 27836513 ~ 27839103 (+)

Expression


Co-expression Network